Wall clock time and date at job start Tue Mar 31 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34728 * 117.00085 * 2 1 4 4 O 1.21480 * 120.00143 * 359.97438 * 3 2 1 5 5 C 1.47700 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.39499 * 120.00671 * 179.97438 * 5 3 2 7 7 N 1.32018 * 119.97918 * 179.97438 * 6 5 3 8 8 C 1.32791 * 119.99054 * 0.02562 * 7 6 5 9 9 N 1.38374 * 119.99150 * 179.97438 * 8 7 6 10 10 C 1.47958 * 110.99796 * 0.02562 * 9 8 7 11 11 C 1.53933 * 86.17823 * 222.41401 * 10 9 8 12 12 O 1.42904 * 113.73759 * 269.25746 * 11 10 9 13 13 C 1.50702 * 113.73068 * 138.07972 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72127 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47961 * 111.00118 * 260.64364 * 9 8 7 22 22 C 1.39882 * 120.01539 * 0.25559 * 8 7 6 23 23 N 1.31454 * 120.02128 * 359.46827 * 22 8 7 24 24 H 1.09000 * 109.46881 * 59.99797 * 1 2 3 25 25 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46841 * 300.00226 * 1 2 3 27 27 H 1.08006 * 120.01139 * 359.95564 * 6 5 3 28 28 H 1.09002 * 113.75733 * 108.09829 * 10 9 8 29 29 H 1.08999 * 113.76210 * 336.73527 * 10 9 8 30 30 H 0.96697 * 114.00189 * 178.10553 * 12 11 10 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 32 32 H 1.09003 * 113.75693 * 23.26242 * 21 9 8 33 33 H 1.09003 * 113.75376 * 251.90130 * 21 9 8 34 34 H 1.07996 * 119.99171 * 179.72269 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.1722 2.5205 -0.0011 7 7 5.4906 2.5889 -0.0011 8 6 6.2131 1.4748 -0.0011 9 7 7.5949 1.5464 -0.0016 10 6 8.0529 2.9534 -0.0015 11 6 9.0990 2.5051 -1.0380 12 8 10.3352 2.0801 -0.4608 13 6 9.2847 3.4793 -2.1727 14 1 8.7079 4.3920 -2.2007 15 6 10.1956 3.2085 -3.1717 16 7 10.8982 2.0973 -3.1374 17 14 10.4313 4.4197 -4.5741 18 1 9.5283 5.5826 -4.3808 19 1 11.8411 4.8861 -4.5936 20 1 10.1125 3.7536 -5.8625 21 6 8.1356 1.3493 -1.3648 22 6 5.5775 0.2287 -0.0065 23 7 4.2648 0.1599 -0.0010 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.5843 3.4265 -0.0018 28 1 8.4839 3.2748 0.9466 29 1 7.3172 3.6547 -0.3951 30 1 10.9849 1.7704 -1.1065 31 1 11.5388 1.9066 -3.8404 32 1 7.4241 1.5813 -2.1572 33 1 8.6327 0.3894 -1.5054 34 1 6.1655 -0.6772 -0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331270526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:21 Heat of formation + Delta-G solvation = -28.925494 kcal Electronic energy + Delta-G solvation = -21235.840340 eV Core-core repulsion = 17750.282778 eV Total energy + Delta-G solvation = -3485.557562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52178 -40.31270 -38.94049 -36.61254 -34.94285 -33.89988 -32.22236 -31.49330 -28.56659 -27.45314 -25.87256 -25.43420 -24.14055 -23.10849 -21.38048 -19.06381 -18.37300 -17.85603 -17.65952 -16.81321 -16.58878 -16.29696 -15.33310 -15.08515 -14.94930 -14.64787 -14.16082 -13.84922 -13.46211 -13.27357 -12.96601 -12.34318 -12.27115 -12.03389 -11.75412 -11.46423 -11.15187 -11.10621 -11.00873 -10.97128 -10.93462 -10.52955 -10.30125 -9.83175 -9.46535 -9.17084 -8.78999 -8.57302 -8.06097 -6.41083 -4.50749 0.28101 1.08625 2.27325 2.42765 3.12320 3.22021 3.26270 3.62383 3.85270 4.00678 4.16722 4.29393 4.60642 4.78674 4.83849 4.90330 4.98174 5.13189 5.30784 5.49159 5.56842 5.79578 5.89063 6.06868 6.08896 6.22462 6.52908 6.54799 6.68174 7.08985 7.16319 7.52564 7.53298 7.62313 7.75823 7.81777 8.52825 9.20133 9.46080 10.65295 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029208 B = 0.003934 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.418304 B = 7115.594974 C = 7501.170046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.537 3.463 4 O -0.504 6.504 5 C -0.022 4.022 6 C 0.153 3.847 7 N -0.478 5.478 8 C 0.288 3.712 9 N -0.434 5.434 10 C 0.021 3.979 11 C 0.247 3.753 12 O -0.569 6.569 13 C -0.537 4.537 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.004 3.996 22 C 0.049 3.951 23 N -0.375 5.375 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.180 0.820 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.392 0.608 31 H 0.273 0.727 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 -3.913 3.689 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.251 6.251 3 C 0.380 3.620 4 O -0.392 6.392 5 C -0.159 4.159 6 C -0.009 4.009 7 N -0.196 5.196 8 C 0.053 3.947 9 N -0.153 5.153 10 C -0.107 4.107 11 C 0.205 3.795 12 O -0.381 6.381 13 C -0.575 4.575 14 H 0.089 0.911 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.121 4.121 22 C -0.121 4.121 23 N -0.091 5.091 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.197 0.803 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.247 0.753 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.547 -3.984 4.650 14.866 hybrid contribution -0.143 0.748 -1.737 1.897 sum -13.690 -3.236 2.913 14.365 Atomic orbital electron populations 1.23328 0.76206 1.03867 1.02579 1.86693 1.23105 1.31825 1.83516 1.20467 0.87402 0.81722 0.72387 1.90855 1.65866 1.36048 1.46406 1.20703 0.91674 0.91816 1.11697 1.23667 0.90540 0.97575 0.89087 1.68800 1.06032 1.30493 1.14321 1.22351 0.94629 0.90289 0.87478 1.65844 1.00448 1.22553 1.26422 1.24329 0.97140 0.87694 1.01507 1.19768 0.82133 0.88606 0.88990 1.86066 1.26308 1.86076 1.39681 1.21633 1.23049 1.06497 1.06320 0.91097 1.25078 0.94522 0.95313 0.98147 1.69326 1.25335 1.24070 1.35010 0.86303 0.78346 0.80960 0.81084 1.19432 1.20532 1.20698 1.25111 0.98405 1.04436 0.84103 1.23474 0.89845 0.98256 1.00502 1.68296 1.06850 1.29731 1.04269 0.91761 0.87894 0.91803 0.80266 0.89845 0.87968 0.75263 0.91694 0.91009 0.89269 0.80207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.33 10.39 -40.57 -0.42 -4.76 16 3 C 0.54 7.68 7.94 34.60 0.27 7.96 16 4 O -0.50 -7.60 16.12 -19.25 -0.31 -7.91 16 5 C -0.02 -0.33 6.74 -82.90 -0.56 -0.89 16 6 C 0.15 2.30 10.76 -17.00 -0.18 2.12 16 7 N -0.48 -8.28 8.35 -11.94 -0.10 -8.38 16 8 C 0.29 5.10 5.88 -155.01 -0.91 4.19 16 9 N -0.43 -8.52 6.24 -176.47 -1.10 -9.62 16 10 C 0.02 0.43 7.04 -2.77 -0.02 0.41 16 11 C 0.25 5.83 1.44 -90.82 -0.13 5.70 16 12 O -0.57 -14.29 13.48 -35.23 -0.47 -14.77 16 13 C -0.54 -13.56 8.62 -34.44 -0.30 -13.86 16 14 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 15 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 16 N -0.90 -22.62 11.08 55.43 0.61 -22.01 16 17 Si 0.91 19.61 29.54 -169.99 -5.02 14.59 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.00 0.09 7.26 -2.75 -0.02 0.07 16 22 C 0.05 0.77 11.08 -17.10 -0.19 0.58 16 23 N -0.38 -5.90 10.26 -9.46 -0.10 -6.00 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.18 2.28 7.63 -52.48 -0.40 1.88 16 28 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 29 H 0.10 2.11 6.62 -51.93 -0.34 1.77 16 30 H 0.39 9.99 6.45 45.56 0.29 10.28 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.07 1.52 7.86 -51.93 -0.41 1.12 16 33 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -27.65 302.95 -6.35 -34.00 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -2.94 Total: 10.95 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -1.06 Total: 9.34 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.68 Total: -46.01 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.21 Total: -27.44 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.65 -6.35 -34.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331270526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.076 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds