Wall clock time and date at job start Tue Mar 31 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34728 * 117.00085 * 2 1 4 4 O 1.21480 * 120.00143 * 359.97438 * 3 2 1 5 5 C 1.47700 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.39499 * 120.00671 * 179.97438 * 5 3 2 7 7 N 1.32018 * 119.97918 * 179.97438 * 6 5 3 8 8 C 1.32791 * 119.99054 * 0.02562 * 7 6 5 9 9 N 1.38374 * 119.99150 * 179.97438 * 8 7 6 10 10 C 1.47958 * 110.99796 * 0.02562 * 9 8 7 11 11 C 1.53933 * 86.17823 * 222.41401 * 10 9 8 12 12 O 1.42904 * 113.73759 * 269.25746 * 11 10 9 13 13 C 1.50702 * 113.73068 * 138.07972 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72127 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47961 * 111.00118 * 260.64364 * 9 8 7 22 22 C 1.39882 * 120.01539 * 0.25559 * 8 7 6 23 23 N 1.31454 * 120.02128 * 359.46827 * 22 8 7 24 24 H 1.09000 * 109.46881 * 59.99797 * 1 2 3 25 25 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46841 * 300.00226 * 1 2 3 27 27 H 1.08006 * 120.01139 * 359.95564 * 6 5 3 28 28 H 1.09002 * 113.75733 * 108.09829 * 10 9 8 29 29 H 1.08999 * 113.76210 * 336.73527 * 10 9 8 30 30 H 0.96697 * 114.00189 * 178.10553 * 12 11 10 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 32 32 H 1.09003 * 113.75693 * 23.26242 * 21 9 8 33 33 H 1.09003 * 113.75376 * 251.90130 * 21 9 8 34 34 H 1.07996 * 119.99171 * 179.72269 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.1722 2.5205 -0.0011 7 7 5.4906 2.5889 -0.0011 8 6 6.2131 1.4748 -0.0011 9 7 7.5949 1.5464 -0.0016 10 6 8.0529 2.9534 -0.0015 11 6 9.0990 2.5051 -1.0380 12 8 10.3352 2.0801 -0.4608 13 6 9.2847 3.4793 -2.1727 14 1 8.7079 4.3920 -2.2007 15 6 10.1956 3.2085 -3.1717 16 7 10.8982 2.0973 -3.1374 17 14 10.4313 4.4197 -4.5741 18 1 9.5283 5.5826 -4.3808 19 1 11.8411 4.8861 -4.5936 20 1 10.1125 3.7536 -5.8625 21 6 8.1356 1.3493 -1.3648 22 6 5.5775 0.2287 -0.0065 23 7 4.2648 0.1599 -0.0010 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.5843 3.4265 -0.0018 28 1 8.4839 3.2748 0.9466 29 1 7.3172 3.6547 -0.3951 30 1 10.9849 1.7704 -1.1065 31 1 11.5388 1.9066 -3.8404 32 1 7.4241 1.5813 -2.1572 33 1 8.6327 0.3894 -1.5054 34 1 6.1655 -0.6772 -0.0110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331270526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:21 Heat of formation + Delta-G solvation = -49.706356 kcal Electronic energy + Delta-G solvation = -21236.741465 eV Core-core repulsion = 17750.282778 eV Total energy + Delta-G solvation = -3486.458687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84096 -41.49235 -40.40845 -37.65918 -36.62261 -35.29348 -34.13521 -32.86073 -29.90801 -28.57195 -27.46347 -27.00838 -25.46805 -24.50903 -22.57912 -20.74290 -19.66026 -19.53966 -18.87090 -17.93745 -17.88631 -17.61732 -17.12287 -16.63716 -16.20096 -16.05216 -15.50157 -15.33837 -14.77247 -14.43848 -14.26768 -14.00653 -13.66729 -13.45137 -13.09376 -13.03532 -12.83163 -12.58437 -12.46423 -12.27458 -12.17607 -12.09098 -11.85763 -11.43433 -11.05658 -10.68057 -10.47089 -10.28411 -9.64474 -8.28776 -6.45365 -0.98276 -0.15923 1.10380 1.41058 1.41810 1.45999 1.55986 2.30876 2.37927 2.55401 2.80946 2.93053 3.02408 3.23038 3.70366 3.78241 3.98847 4.11419 4.21750 4.27667 4.34383 4.35478 4.45073 4.68670 4.73256 4.90863 4.97241 5.03125 5.10240 5.32239 5.71738 5.82573 5.93321 6.02291 6.36132 6.55435 6.59627 7.27868 7.50160 8.76606 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029208 B = 0.003934 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.418304 B = 7115.594974 C = 7501.170046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.345 6.345 3 C 0.541 3.459 4 O -0.513 6.513 5 C -0.015 4.015 6 C 0.151 3.849 7 N -0.491 5.491 8 C 0.267 3.733 9 N -0.431 5.431 10 C 0.029 3.971 11 C 0.225 3.775 12 O -0.579 6.579 13 C -0.559 4.559 14 H 0.064 0.936 15 C 0.033 3.967 16 N -0.913 5.913 17 Si 0.964 3.036 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.277 1.277 21 C 0.017 3.983 22 C 0.058 3.942 23 N -0.379 5.379 24 H 0.068 0.932 25 H 0.133 0.867 26 H 0.069 0.931 27 H 0.203 0.797 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.387 0.613 31 H 0.276 0.724 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 -4.250 3.479 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.260 6.260 3 C 0.384 3.616 4 O -0.402 6.402 5 C -0.153 4.153 6 C -0.010 4.010 7 N -0.209 5.209 8 C 0.032 3.968 9 N -0.149 5.149 10 C -0.099 4.099 11 C 0.183 3.817 12 O -0.391 6.391 13 C -0.597 4.597 14 H 0.082 0.918 15 C -0.168 4.168 16 N -0.554 5.554 17 Si 0.790 3.210 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.109 4.109 22 C -0.111 4.111 23 N -0.096 5.096 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.219 0.781 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.241 0.759 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -15.199 -4.340 4.456 16.423 hybrid contribution 0.182 0.821 -1.636 1.840 sum -15.017 -3.519 2.820 15.680 Atomic orbital electron populations 1.23706 0.73692 1.06147 1.03126 1.86672 1.25555 1.30846 1.82933 1.20266 0.86951 0.82121 0.72302 1.90853 1.65950 1.36473 1.46902 1.20997 0.92509 0.91779 1.09975 1.23978 0.89796 0.98546 0.88667 1.68716 1.07142 1.30778 1.14294 1.22312 0.93772 0.91310 0.89433 1.65785 1.02092 1.21402 1.25632 1.24172 0.96359 0.88724 1.00624 1.20040 0.82201 0.89745 0.89703 1.86049 1.27007 1.86225 1.39838 1.21847 1.23637 1.06880 1.07363 0.91772 1.25727 0.94276 0.96729 1.00028 1.69383 1.25484 1.24926 1.35589 0.85408 0.78078 0.79012 0.78551 1.19502 1.20309 1.20267 1.24767 0.97745 1.03249 0.85093 1.23715 0.89922 0.98190 0.99247 1.68382 1.06723 1.29912 1.04542 0.91307 0.84849 0.91187 0.78084 0.89995 0.87899 0.75870 0.91391 0.91525 0.89364 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 113.37 1.20 1.57 16 2 O -0.35 -8.09 10.39 -56.38 -0.59 -8.68 16 3 C 0.54 14.36 7.94 70.32 0.56 14.92 16 4 O -0.51 -14.43 16.12 19.90 0.32 -14.11 16 5 C -0.02 -0.43 6.74 41.73 0.28 -0.15 16 6 C 0.15 4.32 10.76 84.97 0.91 5.23 16 7 N -0.49 -16.53 8.35 -191.69 -1.60 -18.13 16 8 C 0.27 9.22 5.88 133.34 0.78 10.00 16 9 N -0.43 -16.76 6.24 -715.46 -4.46 -21.22 16 10 C 0.03 1.22 7.04 86.41 0.61 1.83 16 11 C 0.22 10.72 1.44 -10.88 -0.02 10.70 16 12 O -0.58 -29.56 13.48 -148.98 -2.01 -31.57 16 13 C -0.56 -28.53 8.62 25.60 0.22 -28.31 16 14 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 15 C 0.03 1.65 5.40 84.66 0.46 2.11 16 16 N -0.91 -46.19 11.08 21.45 0.24 -45.96 16 17 Si 0.96 40.07 29.54 68.60 2.03 42.10 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.02 0.73 7.26 86.42 0.63 1.35 16 22 C 0.06 1.72 11.08 85.15 0.94 2.67 16 23 N -0.38 -11.23 10.26 -183.83 -1.89 -13.12 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 25 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.20 4.73 7.63 -2.91 -0.02 4.71 16 28 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.10 4.27 6.62 -2.39 -0.02 4.26 16 30 H 0.39 20.11 6.45 -74.06 -0.48 19.63 16 31 H 0.28 13.17 8.31 -92.70 -0.77 12.40 16 32 H 0.07 2.84 7.86 -2.39 -0.02 2.82 16 33 H 0.09 3.70 8.14 -2.39 -0.02 3.68 16 34 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -57.68 302.95 -0.71 -58.39 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.67 Total: 30.36 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 6.58 Total: 21.93 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -7.71 Total: -98.43 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -2.27 Total: -54.36 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -57.68 -0.71 -58.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331270526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.687 kcal (2) G-P(sol) polarization free energy of solvation -57.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds