Wall clock time and date at job start Tue Mar 31 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00449 * 2 1 4 4 O 1.20830 * 119.99702 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47334 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47312 * 179.97438 * 6 5 3 8 8 C 1.36676 * 120.00205 * 264.46624 * 7 6 5 9 9 H 1.08009 * 120.00137 * 131.95137 * 8 7 6 10 10 C 1.39177 * 120.00042 * 311.95036 * 8 7 6 11 11 N 1.31272 * 120.00016 * 3.27959 * 10 8 7 12 12 Si 1.86801 * 120.00208 * 183.28500 * 10 8 7 13 13 H 1.48506 * 109.47070 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46995 * 119.99649 * 12 10 8 15 15 H 1.48498 * 109.47051 * 239.99692 * 12 10 8 16 16 C 1.34780 * 120.00046 * 84.46324 * 7 6 5 17 17 O 1.21536 * 119.99907 * 4.81395 * 16 7 6 18 18 C 1.48317 * 120.00383 * 184.80829 * 16 7 6 19 19 N 1.32560 * 119.19437 * 353.55823 * 18 16 7 20 20 C 1.32100 * 120.75520 * 179.75570 * 19 18 16 21 21 C 1.38812 * 119.17814 * 0.50757 * 20 19 18 22 22 C 1.38818 * 118.52391 * 359.74953 * 21 20 19 23 23 N 1.32102 * 119.17705 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47338 * 299.99944 * 1 2 3 25 25 H 1.09008 * 109.47233 * 59.99412 * 1 2 3 26 26 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47205 * 60.00360 * 5 3 2 28 28 H 1.09005 * 109.47200 * 300.00394 * 5 3 2 29 29 H 1.08996 * 109.46890 * 59.99911 * 6 5 3 30 30 H 1.08997 * 109.46783 * 300.00094 * 6 5 3 31 31 H 0.96993 * 120.00579 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.41214 * 180.28044 * 20 19 18 33 33 H 1.07993 * 120.74042 * 179.76993 * 21 20 19 34 34 H 1.08001 * 120.41185 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4632 2.8185 0.0023 8 6 6.1388 2.9681 1.1810 9 1 6.9845 2.3340 1.4030 10 6 5.7370 3.9375 2.0952 11 7 4.6708 4.6647 1.8547 12 14 6.7150 4.2041 3.6642 13 1 7.8637 3.2636 3.6974 14 1 7.2172 5.6012 3.7032 15 1 5.8412 3.9593 4.8397 16 6 6.1430 2.7414 -1.1589 17 8 5.5409 2.6965 -2.2137 18 6 7.6258 2.7115 -1.1497 19 7 8.2691 2.8906 -0.0045 20 6 9.5891 2.8652 0.0400 21 6 10.3019 2.6583 -1.1330 22 6 9.5960 2.4796 -2.3149 23 7 8.2757 2.5112 -2.2875 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9563 0.7805 -0.8891 28 1 3.9557 0.7807 0.8908 29 1 3.6102 3.2358 0.8910 30 1 3.6109 3.2362 -0.8889 31 1 4.3910 5.3406 2.4916 32 1 10.1073 3.0073 0.9767 33 1 11.3816 2.6365 -1.1263 34 1 10.1198 2.3160 -3.2451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334235099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:37 Heat of formation + Delta-G solvation = -43.286642 kcal Electronic energy + Delta-G solvation = -21661.577571 eV Core-core repulsion = 18175.397263 eV Total energy + Delta-G solvation = -3486.180308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52724 -40.00337 -38.24160 -36.14153 -35.04512 -33.17515 -32.05583 -31.71616 -30.41508 -27.53004 -25.23759 -24.93376 -23.96183 -22.80721 -20.45426 -19.53974 -18.18946 -17.28621 -16.90074 -16.20579 -16.14919 -15.74207 -15.64543 -14.80393 -14.57282 -14.34081 -13.99116 -13.56331 -13.38503 -13.10286 -12.89931 -12.58450 -12.17288 -11.96691 -11.67952 -11.24755 -11.14170 -11.00567 -10.51412 -10.40009 -10.33084 -10.16638 -10.07046 -9.96613 -9.20741 -9.19189 -8.75347 -8.38124 -7.47371 -6.31933 -4.09487 1.06643 1.60147 2.69935 3.05725 3.13882 3.22852 3.27532 3.62622 3.94566 4.22983 4.61846 4.66899 4.91500 5.04272 5.18360 5.26774 5.28587 5.33455 5.40972 5.47932 5.66042 5.82436 5.89698 6.05447 6.15314 6.28380 6.72073 6.76543 6.89976 7.37198 7.48698 7.65114 7.87857 8.21303 8.42637 8.61129 9.06434 9.34983 9.77618 10.67722 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.006436 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.532341 B = 4349.443146 C = 5744.370764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.503 6.503 5 C -0.126 4.126 6 C 0.123 3.877 7 N -0.409 5.409 8 C -0.306 4.306 9 H 0.116 0.884 10 C 0.042 3.958 11 N -0.867 5.867 12 Si 0.924 3.076 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.284 1.284 16 C 0.523 3.477 17 O -0.573 6.573 18 C 0.306 3.694 19 N -0.441 5.441 20 C 0.125 3.875 21 C -0.237 4.237 22 C 0.131 3.869 23 N -0.484 5.484 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.271 0.729 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -6.815 0.184 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.165 4.165 6 C 0.000 4.000 7 N -0.126 5.126 8 C -0.435 4.435 9 H 0.133 0.867 10 C -0.164 4.164 11 N -0.504 5.504 12 Si 0.751 3.249 13 H -0.188 1.188 14 H -0.208 1.208 15 H -0.210 1.210 16 C 0.309 3.691 17 O -0.455 6.455 18 C 0.038 3.962 19 N -0.157 5.157 20 C -0.042 4.042 21 C -0.259 4.259 22 C -0.037 4.037 23 N -0.199 5.199 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.556 -6.347 -0.253 6.847 hybrid contribution 1.427 0.321 0.840 1.687 sum 3.983 -6.026 0.588 7.247 Atomic orbital electron populations 1.23165 0.77364 1.02997 1.02360 1.86534 1.22746 1.34432 1.84701 1.23985 0.92274 0.80896 0.71802 1.90659 1.67217 1.36175 1.44917 1.21904 0.86124 1.03260 1.05197 1.21482 0.81312 0.90886 1.06341 1.43278 1.04717 1.59543 1.05109 1.20052 1.12998 1.17026 0.93472 0.86728 1.25639 0.95945 0.94794 1.00003 1.69655 1.22647 1.21390 1.36681 0.85906 0.79890 0.78449 0.80662 1.18835 1.20768 1.20965 1.17680 0.83501 0.83227 0.84696 1.90665 1.68039 1.55730 1.31072 1.23276 0.96940 0.92206 0.83729 1.69728 1.08016 1.10046 1.27881 1.23596 0.91110 0.91230 0.98230 1.22983 1.02327 1.04932 0.95705 1.23166 0.89823 0.92482 0.98199 1.68326 1.09373 1.12096 1.30110 0.92134 0.92175 0.88659 0.88514 0.87681 0.85141 0.91575 0.91826 0.81998 0.84294 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.05 10.56 -39.25 -0.41 -6.46 16 3 C 0.47 9.06 7.96 36.00 0.29 9.35 16 4 O -0.50 -11.04 15.73 -18.75 -0.30 -11.33 16 5 C -0.13 -2.52 6.10 -27.88 -0.17 -2.69 16 6 C 0.12 2.97 4.17 -4.04 -0.02 2.96 16 7 N -0.41 -10.31 2.50 -115.74 -0.29 -10.60 16 8 C -0.31 -7.57 7.44 -15.04 -0.11 -7.69 16 9 H 0.12 2.75 5.98 -52.48 -0.31 2.44 16 10 C 0.04 1.04 5.35 -17.44 -0.09 0.95 16 11 N -0.87 -22.90 10.99 55.51 0.61 -22.29 16 12 Si 0.92 19.37 29.56 -169.99 -5.02 14.35 16 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.52 13.44 7.61 -12.11 -0.09 13.35 16 17 O -0.57 -15.85 16.52 5.33 0.09 -15.76 16 18 C 0.31 6.98 7.51 -157.01 -1.18 5.80 16 19 N -0.44 -9.16 6.39 -11.15 -0.07 -9.23 16 20 C 0.13 1.96 11.30 -17.22 -0.19 1.76 16 21 C -0.24 -3.09 10.18 -39.15 -0.40 -3.49 16 22 C 0.13 1.99 11.30 -17.22 -0.19 1.79 16 23 N -0.48 -10.03 10.14 -11.14 -0.11 -10.14 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.10 1.91 8.14 -51.93 -0.42 1.48 16 28 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 29 H 0.13 3.40 5.47 -51.93 -0.28 3.12 16 30 H 0.07 1.72 7.49 -51.93 -0.39 1.33 16 31 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -32.62 305.30 -5.51 -38.13 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.50 Total: 5.14 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: -1.10 Total: 23.59 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.14 Total: -52.26 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.62 Total: -33.55 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.62 -5.51 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334235099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.155 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds