Wall clock time and date at job start Tue Mar 31 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00449 * 2 1 4 4 O 1.20830 * 119.99702 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47334 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47312 * 179.97438 * 6 5 3 8 8 C 1.36676 * 120.00205 * 264.46624 * 7 6 5 9 9 H 1.08009 * 120.00137 * 131.95137 * 8 7 6 10 10 C 1.39177 * 120.00042 * 311.95036 * 8 7 6 11 11 N 1.31272 * 120.00016 * 3.27959 * 10 8 7 12 12 Si 1.86801 * 120.00208 * 183.28500 * 10 8 7 13 13 H 1.48506 * 109.47070 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46995 * 119.99649 * 12 10 8 15 15 H 1.48498 * 109.47051 * 239.99692 * 12 10 8 16 16 C 1.34780 * 120.00046 * 84.46324 * 7 6 5 17 17 O 1.21536 * 119.99907 * 4.81395 * 16 7 6 18 18 C 1.48317 * 120.00383 * 184.80829 * 16 7 6 19 19 N 1.32560 * 119.19437 * 353.55823 * 18 16 7 20 20 C 1.32100 * 120.75520 * 179.75570 * 19 18 16 21 21 C 1.38812 * 119.17814 * 0.50757 * 20 19 18 22 22 C 1.38818 * 118.52391 * 359.74953 * 21 20 19 23 23 N 1.32102 * 119.17705 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47338 * 299.99944 * 1 2 3 25 25 H 1.09008 * 109.47233 * 59.99412 * 1 2 3 26 26 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47205 * 60.00360 * 5 3 2 28 28 H 1.09005 * 109.47200 * 300.00394 * 5 3 2 29 29 H 1.08996 * 109.46890 * 59.99911 * 6 5 3 30 30 H 1.08997 * 109.46783 * 300.00094 * 6 5 3 31 31 H 0.96993 * 120.00579 * 180.02562 * 11 10 8 32 32 H 1.07996 * 120.41214 * 180.28044 * 20 19 18 33 33 H 1.07993 * 120.74042 * 179.76993 * 21 20 19 34 34 H 1.08001 * 120.41185 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4632 2.8185 0.0023 8 6 6.1388 2.9681 1.1810 9 1 6.9845 2.3340 1.4030 10 6 5.7370 3.9375 2.0952 11 7 4.6708 4.6647 1.8547 12 14 6.7150 4.2041 3.6642 13 1 7.8637 3.2636 3.6974 14 1 7.2172 5.6012 3.7032 15 1 5.8412 3.9593 4.8397 16 6 6.1430 2.7414 -1.1589 17 8 5.5409 2.6965 -2.2137 18 6 7.6258 2.7115 -1.1497 19 7 8.2691 2.8906 -0.0045 20 6 9.5891 2.8652 0.0400 21 6 10.3019 2.6583 -1.1330 22 6 9.5960 2.4796 -2.3149 23 7 8.2757 2.5112 -2.2875 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9563 0.7805 -0.8891 28 1 3.9557 0.7807 0.8908 29 1 3.6102 3.2358 0.8910 30 1 3.6109 3.2362 -0.8889 31 1 4.3910 5.3406 2.4916 32 1 10.1073 3.0073 0.9767 33 1 11.3816 2.6365 -1.1263 34 1 10.1198 2.3160 -3.2451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334235099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:36 Heat of formation + Delta-G solvation = -65.234659 kcal Electronic energy + Delta-G solvation = -21662.529308 eV Core-core repulsion = 18175.397263 eV Total energy + Delta-G solvation = -3487.132045 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98276 -41.51745 -40.04544 -37.65222 -36.92937 -34.59114 -33.85019 -33.22819 -32.04818 -28.76713 -27.03024 -26.54461 -25.26204 -24.39569 -22.00882 -21.32222 -19.89253 -18.83092 -18.35032 -17.72618 -17.63987 -17.41119 -16.98247 -16.32583 -16.20407 -16.05669 -15.51915 -15.02648 -14.96310 -14.54352 -14.30975 -14.17150 -13.78060 -13.63651 -13.08243 -12.99525 -12.80728 -12.68536 -11.98113 -11.95254 -11.80410 -11.78989 -11.68202 -11.57490 -11.07307 -10.57652 -10.46283 -9.93220 -9.35640 -8.18248 -6.03321 -0.31344 0.36505 1.13015 1.49131 1.51596 1.62427 1.67343 1.95865 2.30610 2.54749 3.06242 3.15160 3.44891 3.66884 3.84278 3.85372 4.09497 4.20049 4.30547 4.32415 4.33176 4.34184 4.57196 4.59627 4.69670 4.91503 4.96694 5.27467 5.43021 5.50729 5.73451 5.97990 6.22667 6.56279 6.69986 7.06548 7.23921 7.49885 7.88364 8.82495 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.006436 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.532341 B = 4349.443146 C = 5744.370764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.535 6.535 5 C -0.115 4.115 6 C 0.129 3.871 7 N -0.419 5.419 8 C -0.309 4.309 9 H 0.124 0.876 10 C -0.006 4.006 11 N -0.909 5.909 12 Si 0.990 3.010 13 H -0.241 1.241 14 H -0.287 1.287 15 H -0.284 1.284 16 C 0.509 3.491 17 O -0.611 6.611 18 C 0.274 3.726 19 N -0.469 5.469 20 C 0.110 3.890 21 C -0.192 4.192 22 C 0.121 3.879 23 N -0.518 5.518 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.139 0.861 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.032 0.968 31 H 0.269 0.731 32 H 0.201 0.799 33 H 0.199 0.801 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.495 -8.246 1.001 11.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.320 3.680 4 O -0.425 6.425 5 C -0.153 4.153 6 C 0.006 3.994 7 N -0.136 5.136 8 C -0.437 4.437 9 H 0.141 0.859 10 C -0.207 4.207 11 N -0.548 5.548 12 Si 0.813 3.187 13 H -0.164 1.164 14 H -0.214 1.214 15 H -0.210 1.210 16 C 0.297 3.703 17 O -0.496 6.496 18 C 0.006 3.994 19 N -0.186 5.186 20 C -0.056 4.056 21 C -0.213 4.213 22 C -0.045 4.045 23 N -0.234 5.234 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.218 0.782 33 H 0.216 0.784 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.802 -7.819 0.576 9.754 hybrid contribution 0.584 0.704 0.464 1.026 sum 6.386 -7.115 1.039 9.617 Atomic orbital electron populations 1.23591 0.74697 1.05900 1.02492 1.86501 1.25219 1.32269 1.83883 1.23700 0.91899 0.81324 0.71111 1.90648 1.67766 1.37448 1.46593 1.21653 0.87223 1.00469 1.06001 1.21223 0.81518 0.93159 1.03549 1.43465 1.04866 1.59692 1.05548 1.20302 1.13033 1.17313 0.93100 0.85876 1.26510 0.96628 0.94370 1.03173 1.69821 1.24499 1.22443 1.38012 0.84912 0.79046 0.78213 0.76490 1.16393 1.21370 1.20995 1.18283 0.85534 0.82381 0.84149 1.90599 1.69561 1.57303 1.32165 1.22474 0.95439 0.96159 0.85369 1.69455 1.10938 1.10798 1.27373 1.24322 0.89465 0.90730 1.01037 1.23564 1.04932 0.99377 0.93457 1.24031 0.88065 0.91328 1.01065 1.68229 1.12375 1.13118 1.29716 0.91989 0.92191 0.84334 0.88322 0.86062 0.87115 0.94920 0.92136 0.78185 0.78373 0.77675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.75 10.56 -51.41 -0.54 -12.30 16 3 C 0.48 18.99 7.96 71.23 0.57 19.56 16 4 O -0.53 -24.56 15.73 21.95 0.35 -24.21 16 5 C -0.11 -4.81 6.10 29.85 0.18 -4.62 16 6 C 0.13 6.67 4.17 86.38 0.36 7.03 16 7 N -0.42 -22.14 2.50 -638.36 -1.60 -23.74 16 8 C -0.31 -15.60 7.44 84.16 0.63 -14.98 16 9 H 0.12 5.91 5.98 -2.91 -0.02 5.89 16 10 C -0.01 -0.30 5.35 85.00 0.45 0.16 16 11 N -0.91 -50.19 10.99 21.70 0.24 -49.95 16 12 Si 0.99 39.54 29.56 68.60 2.03 41.56 16 13 H -0.24 -8.61 7.11 99.48 0.71 -7.91 16 14 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 16 C 0.51 27.45 7.61 86.93 0.66 28.11 16 17 O -0.61 -35.90 16.52 -3.83 -0.06 -35.96 16 18 C 0.27 12.60 7.51 137.56 1.03 13.63 16 19 N -0.47 -18.92 6.39 -189.18 -1.21 -20.13 16 20 C 0.11 3.00 11.30 84.79 0.96 3.96 16 21 C -0.19 -3.95 10.18 22.55 0.23 -3.72 16 22 C 0.12 3.22 11.30 84.79 0.96 4.18 16 23 N -0.52 -21.12 10.14 -189.17 -1.92 -23.04 16 24 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 25 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.12 4.63 8.14 -2.38 -0.02 4.61 16 29 H 0.11 6.19 5.47 -2.39 -0.01 6.17 16 30 H 0.03 1.84 7.49 -2.39 -0.02 1.83 16 31 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 33 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 34 H 0.21 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -77.87 305.30 5.64 -72.22 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.13 Total: 20.43 kcal Atomic # 6 Polarization: 47.89 SS G_CDS: 7.23 Total: 55.11 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -4.49 Total: -116.86 kcal Atomic # 8 Polarization: -72.21 SS G_CDS: -0.26 Total: -72.47 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.56 kcal Total: -77.87 5.64 -72.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334235099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.988 kcal (2) G-P(sol) polarization free energy of solvation -77.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds