Wall clock time and date at job start Tue Mar 31 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34644 * 117.00431 * 2 1 4 4 O 1.21387 * 119.99426 * 0.02562 * 3 2 1 5 5 C 1.48381 * 120.00330 * 179.97438 * 3 2 1 6 6 C 1.39531 * 120.50811 * 179.97438 * 5 3 2 7 7 C 1.38792 * 118.41981 * 179.74613 * 6 5 3 8 8 N 1.32130 * 119.24570 * 0.25034 * 7 6 5 9 9 C 1.32573 * 120.96727 * 0.02562 * 8 7 6 10 10 N 1.38427 * 119.13917 * 180.02562 * 9 8 7 11 11 C 1.47476 * 111.00603 * 95.96591 * 10 9 8 12 12 C 1.53510 * 87.93414 * 221.29863 * 11 10 9 13 13 O 1.42892 * 114.17351 * 272.37567 * 12 11 10 14 14 C 1.50703 * 114.16722 * 139.66842 * 12 11 10 15 15 H 1.08005 * 120.00038 * 266.15503 * 14 12 11 16 16 C 1.37881 * 119.99783 * 86.16432 * 14 12 11 17 17 N 1.31515 * 119.99798 * 179.97438 * 16 14 12 18 18 Si 1.86796 * 120.00069 * 359.97438 * 16 14 12 19 19 H 1.48500 * 109.46754 * 90.00635 * 18 16 14 20 20 H 1.48498 * 109.47161 * 210.00143 * 18 16 14 21 21 H 1.48493 * 109.47246 * 330.00644 * 18 16 14 22 22 C 1.47487 * 110.99500 * 359.97438 * 10 9 8 23 23 N 1.32289 * 121.72750 * 0.02562 * 9 8 7 24 24 H 1.08998 * 109.47095 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46797 * 300.00370 * 1 2 3 26 26 H 1.09000 * 109.46529 * 59.99895 * 1 2 3 27 27 H 1.08002 * 120.79336 * 0.02562 * 6 5 3 28 28 H 1.07996 * 120.37697 * 180.27303 * 7 6 5 29 29 H 1.09006 * 113.47535 * 336.06971 * 11 10 9 30 30 H 1.08998 * 113.47814 * 106.53158 * 11 10 9 31 31 H 0.96704 * 114.00072 * 273.84152 * 13 12 11 32 32 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 33 33 H 1.09006 * 113.47174 * 253.46881 * 22 10 9 34 34 H 1.08991 * 113.47681 * 23.93652 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4022 2.2177 0.0005 5 6 3.5451 1.2773 0.0006 6 6 4.1896 2.5148 0.0000 7 6 5.5773 2.5369 0.0060 8 7 6.2411 1.3944 0.0070 9 6 5.6009 0.2335 0.0018 10 7 6.3342 -0.9406 0.0035 11 6 6.4859 -1.4671 1.3727 12 6 7.9422 -1.8033 1.0224 13 8 8.1187 -3.0902 0.4271 14 6 8.9249 -1.5159 2.1283 15 1 9.4437 -0.5691 2.1571 16 6 9.1616 -2.4618 3.1031 17 7 10.0196 -2.2113 4.0679 18 14 8.2639 -4.0992 3.0535 19 1 9.0575 -5.0750 2.2641 20 1 8.0871 -4.6089 4.4370 21 1 6.9335 -3.9152 2.4199 22 6 7.7820 -0.6594 0.0107 23 7 4.2797 0.1677 -0.0050 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 3.6221 3.4337 -0.0004 28 1 6.1086 3.4772 0.0102 29 1 6.3900 -0.7035 2.1447 30 1 5.8727 -2.3463 1.5703 31 1 8.2195 -3.8088 1.0664 32 1 10.1859 -2.8766 4.7539 33 1 8.2669 -0.8546 -0.9459 34 1 8.0321 0.3197 0.4189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337941176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:39 Heat of formation + Delta-G solvation = 2.013837 kcal Electronic energy + Delta-G solvation = -21501.093417 eV Core-core repulsion = 18016.877485 eV Total energy + Delta-G solvation = -3484.215932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62964 -40.50415 -39.18902 -36.77372 -35.19334 -33.99824 -32.52076 -31.84599 -28.37620 -28.13244 -26.07174 -25.14165 -24.99449 -22.86508 -21.31299 -19.38537 -18.60753 -18.03090 -17.28092 -16.92872 -16.71446 -16.31160 -15.99527 -15.62373 -15.29168 -14.50144 -14.08379 -13.83676 -13.65520 -13.42625 -13.11061 -12.85561 -12.39586 -12.31500 -12.02536 -11.29914 -11.18262 -11.05676 -11.04113 -10.97772 -10.84271 -10.54069 -10.14148 -9.91750 -9.51060 -9.25978 -9.03227 -8.73010 -8.32472 -6.40037 -4.45351 0.24004 0.87098 2.20129 2.23469 3.03083 3.10085 3.18529 3.41657 3.63991 3.96666 4.06597 4.39642 4.57537 4.69929 4.83317 4.85290 4.93678 4.98672 5.22773 5.28157 5.43437 5.59619 5.65713 5.93006 5.98038 6.06476 6.36694 6.44387 6.52870 6.68576 6.75783 7.21614 7.36437 7.48770 8.04193 8.06320 8.56973 8.64110 9.17961 10.72008 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004745 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.467479 B = 5899.910198 C = 6480.000675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.529 3.471 4 O -0.493 6.493 5 C 0.157 3.843 6 C -0.199 4.199 7 C 0.173 3.827 8 N -0.518 5.518 9 C 0.475 3.525 10 N -0.415 5.415 11 C -0.008 4.008 12 C 0.206 3.794 13 O -0.545 6.545 14 C -0.533 4.533 15 H 0.092 0.908 16 C 0.080 3.920 17 N -0.877 5.877 18 Si 0.858 3.142 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.254 1.254 22 C 0.033 3.967 23 N -0.471 5.471 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.350 0.650 32 H 0.271 0.729 33 H 0.086 0.914 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 6.918 -6.156 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.371 3.629 4 O -0.379 6.379 5 C 0.008 3.992 6 C -0.223 4.223 7 C 0.003 3.997 8 N -0.237 5.237 9 C 0.120 3.880 10 N -0.136 5.136 11 C -0.135 4.135 12 C 0.164 3.836 13 O -0.356 6.356 14 C -0.571 4.571 15 H 0.110 0.890 16 C -0.126 4.126 17 N -0.512 5.512 18 Si 0.686 3.314 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.179 1.179 22 C -0.095 4.095 23 N -0.191 5.191 24 H 0.124 0.876 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.178 0.822 28 H 0.198 0.802 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.202 0.798 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.090 6.170 -7.045 16.918 hybrid contribution -0.965 0.162 1.058 1.441 sum -15.055 6.331 -5.988 17.395 Atomic orbital electron populations 1.23396 0.75759 1.04263 1.02620 1.86725 1.23421 1.31292 1.82837 1.20744 0.87504 0.81947 0.72718 1.90839 1.65616 1.36179 1.45308 1.20266 0.91186 0.89987 0.97722 1.22742 0.96954 0.99017 1.03559 1.23293 0.90480 0.96967 0.88936 1.68494 1.41755 0.98977 1.14503 1.22256 0.86761 0.90368 0.88628 1.66118 1.08321 1.14021 1.25147 1.25139 1.02252 1.00104 0.86002 1.20099 0.90204 0.81675 0.91591 1.86486 1.95125 1.16723 1.37283 1.21229 1.24048 1.04746 1.07027 0.89028 1.25014 0.94290 0.98321 0.94951 1.69858 1.32898 1.35375 1.13093 0.87331 0.81398 0.84691 0.77968 1.19111 1.21089 1.17938 1.24135 0.83814 1.00209 1.01294 1.68112 1.06979 1.30758 1.13203 0.87565 0.91603 0.91648 0.82232 0.80194 0.90269 0.89809 0.79764 0.91911 0.89606 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.46 10.42 -40.34 -0.42 -4.88 16 3 C 0.53 7.51 7.97 34.91 0.28 7.79 16 4 O -0.49 -7.07 16.21 -19.18 -0.31 -7.38 16 5 C 0.16 2.38 6.79 -82.67 -0.56 1.82 16 6 C -0.20 -2.41 9.71 -38.89 -0.38 -2.79 16 7 C 0.17 2.12 11.30 -17.22 -0.19 1.92 16 8 N -0.52 -8.64 8.18 -13.94 -0.11 -8.75 16 9 C 0.47 9.00 6.77 -322.94 -2.19 6.82 16 10 N -0.41 -8.72 6.51 -184.78 -1.20 -9.92 16 11 C -0.01 -0.18 6.49 -7.50 -0.05 -0.22 16 12 C 0.21 4.87 1.10 -91.22 -0.10 4.77 16 13 O -0.55 -13.18 13.32 -35.23 -0.47 -13.65 16 14 C -0.53 -14.13 9.27 -34.44 -0.32 -14.45 16 15 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.88 -24.90 13.96 55.43 0.77 -24.13 16 18 Si 0.86 19.49 24.41 -169.99 -4.15 15.34 16 19 H -0.26 -5.80 7.06 56.52 0.40 -5.40 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.25 -5.55 5.46 56.52 0.31 -5.24 16 22 C 0.03 0.70 6.78 -7.47 -0.05 0.65 16 23 N -0.47 -8.56 10.28 -10.50 -0.11 -8.66 16 24 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.16 1.48 7.73 -52.49 -0.41 1.08 16 28 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.08 1.73 7.85 -51.93 -0.41 1.32 16 30 H 0.08 1.83 7.11 -51.93 -0.37 1.46 16 31 H 0.35 8.10 3.17 45.56 0.14 8.25 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.11 2.25 6.57 -51.93 -0.34 1.91 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -31.50 294.55 -7.30 -38.80 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.15 Total: 9.09 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -2.59 Total: 9.69 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.65 Total: -51.46 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.20 Total: -25.90 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.15 Total: 15.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.50 -7.30 -38.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337941176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.818 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds