Wall clock time and date at job start Tue Mar 31 2020 01:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34644 * 117.00431 * 2 1 4 4 O 1.21387 * 119.99426 * 0.02562 * 3 2 1 5 5 C 1.48381 * 120.00330 * 179.97438 * 3 2 1 6 6 C 1.39531 * 120.50811 * 179.97438 * 5 3 2 7 7 C 1.38792 * 118.41981 * 179.74613 * 6 5 3 8 8 N 1.32130 * 119.24570 * 0.25034 * 7 6 5 9 9 C 1.32573 * 120.96727 * 0.02562 * 8 7 6 10 10 N 1.38427 * 119.13917 * 180.02562 * 9 8 7 11 11 C 1.47476 * 111.00603 * 95.96591 * 10 9 8 12 12 C 1.53510 * 87.93414 * 221.29863 * 11 10 9 13 13 O 1.42892 * 114.17351 * 272.37567 * 12 11 10 14 14 C 1.50703 * 114.16722 * 139.66842 * 12 11 10 15 15 H 1.08005 * 120.00038 * 266.15503 * 14 12 11 16 16 C 1.37881 * 119.99783 * 86.16432 * 14 12 11 17 17 N 1.31515 * 119.99798 * 179.97438 * 16 14 12 18 18 Si 1.86796 * 120.00069 * 359.97438 * 16 14 12 19 19 H 1.48500 * 109.46754 * 90.00635 * 18 16 14 20 20 H 1.48498 * 109.47161 * 210.00143 * 18 16 14 21 21 H 1.48493 * 109.47246 * 330.00644 * 18 16 14 22 22 C 1.47487 * 110.99500 * 359.97438 * 10 9 8 23 23 N 1.32289 * 121.72750 * 0.02562 * 9 8 7 24 24 H 1.08998 * 109.47095 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46797 * 300.00370 * 1 2 3 26 26 H 1.09000 * 109.46529 * 59.99895 * 1 2 3 27 27 H 1.08002 * 120.79336 * 0.02562 * 6 5 3 28 28 H 1.07996 * 120.37697 * 180.27303 * 7 6 5 29 29 H 1.09006 * 113.47535 * 336.06971 * 11 10 9 30 30 H 1.08998 * 113.47814 * 106.53158 * 11 10 9 31 31 H 0.96704 * 114.00072 * 273.84152 * 13 12 11 32 32 H 0.97001 * 119.99873 * 179.97438 * 17 16 14 33 33 H 1.09006 * 113.47174 * 253.46881 * 22 10 9 34 34 H 1.08991 * 113.47681 * 23.93652 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1996 0.0000 4 8 1.4022 2.2177 0.0005 5 6 3.5451 1.2773 0.0006 6 6 4.1896 2.5148 0.0000 7 6 5.5773 2.5369 0.0060 8 7 6.2411 1.3944 0.0070 9 6 5.6009 0.2335 0.0018 10 7 6.3342 -0.9406 0.0035 11 6 6.4859 -1.4671 1.3727 12 6 7.9422 -1.8033 1.0224 13 8 8.1187 -3.0902 0.4271 14 6 8.9249 -1.5159 2.1283 15 1 9.4437 -0.5691 2.1571 16 6 9.1616 -2.4618 3.1031 17 7 10.0196 -2.2113 4.0679 18 14 8.2639 -4.0992 3.0535 19 1 9.0575 -5.0750 2.2641 20 1 8.0871 -4.6089 4.4370 21 1 6.9335 -3.9152 2.4199 22 6 7.7820 -0.6594 0.0107 23 7 4.2797 0.1677 -0.0050 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 3.6221 3.4337 -0.0004 28 1 6.1086 3.4772 0.0102 29 1 6.3900 -0.7035 2.1447 30 1 5.8727 -2.3463 1.5703 31 1 8.2195 -3.8088 1.0664 32 1 10.1859 -2.8766 4.7539 33 1 8.2669 -0.8546 -0.9459 34 1 8.0321 0.3197 0.4189 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337941176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:39 Heat of formation + Delta-G solvation = -22.699052 kcal Electronic energy + Delta-G solvation = -21502.165048 eV Core-core repulsion = 18016.877485 eV Total energy + Delta-G solvation = -3485.287563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.91695 -41.66438 -40.62892 -37.79308 -36.94612 -35.18453 -34.56490 -33.15124 -29.84689 -29.21908 -27.44633 -26.87731 -26.33168 -24.10585 -22.55467 -21.06500 -19.90275 -19.57189 -18.75297 -18.22666 -17.97998 -17.70015 -17.46691 -16.75129 -16.64867 -15.97382 -15.41786 -15.18555 -14.99271 -14.75350 -14.66042 -14.35963 -14.04191 -13.75086 -13.14918 -12.91357 -12.75651 -12.46101 -12.30035 -12.18810 -12.09737 -11.98450 -11.93090 -11.40596 -11.14508 -11.03407 -10.56067 -10.53977 -9.86473 -8.45647 -6.56548 -0.88059 -0.27175 1.11362 1.22577 1.28017 1.29273 1.37365 2.11638 2.15205 2.45377 2.71449 2.89361 3.13654 3.42564 3.50935 3.73440 3.82182 3.93315 4.17316 4.20218 4.26065 4.28906 4.44698 4.60570 4.65674 4.75665 4.86771 4.98179 5.01237 5.04819 5.24460 5.47677 5.97520 6.06569 6.34704 6.50228 6.68819 6.81802 7.10920 8.69689 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004745 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.467479 B = 5899.910198 C = 6480.000675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.348 6.348 3 C 0.532 3.468 4 O -0.498 6.498 5 C 0.134 3.866 6 C -0.169 4.169 7 C 0.179 3.821 8 N -0.537 5.537 9 C 0.450 3.550 10 N -0.423 5.423 11 C 0.003 3.997 12 C 0.194 3.806 13 O -0.550 6.550 14 C -0.541 4.541 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.248 1.248 20 H -0.281 1.281 21 H -0.241 1.241 22 C 0.044 3.956 23 N -0.496 5.496 24 H 0.130 0.870 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.196 0.804 28 H 0.231 0.769 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.353 0.647 32 H 0.274 0.726 33 H 0.090 0.910 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 7.725 -6.948 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.262 6.262 3 C 0.374 3.626 4 O -0.385 6.385 5 C -0.013 4.013 6 C -0.192 4.192 7 C 0.010 3.990 8 N -0.255 5.255 9 C 0.094 3.906 10 N -0.144 5.144 11 C -0.125 4.125 12 C 0.152 3.848 13 O -0.361 6.361 14 C -0.579 4.579 15 H 0.077 0.923 16 C -0.172 4.172 17 N -0.559 5.559 18 Si 0.739 3.261 19 H -0.173 1.173 20 H -0.207 1.207 21 H -0.166 1.166 22 C -0.084 4.084 23 N -0.215 5.215 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.213 0.787 28 H 0.247 0.753 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.206 0.794 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.007 6.997 -7.861 19.156 hybrid contribution -0.463 0.122 1.278 1.364 sum -16.469 7.119 -6.583 19.112 Atomic orbital electron populations 1.23743 0.73358 1.06200 1.03404 1.86703 1.25899 1.31125 1.82505 1.20618 0.87220 0.82156 0.72639 1.90828 1.65595 1.36225 1.45867 1.20681 0.91709 0.90463 0.98434 1.23203 0.97074 0.99186 0.99726 1.24177 0.90877 0.97202 0.86702 1.68455 1.42529 0.99555 1.14999 1.21963 0.87045 0.90407 0.91165 1.65996 1.08039 1.16021 1.24320 1.24814 1.00635 1.00011 0.87050 1.20128 0.90546 0.82289 0.91795 1.86479 1.95246 1.16910 1.37495 1.21343 1.24592 1.03700 1.08251 0.92281 1.25784 0.94966 1.02061 0.94348 1.69984 1.34767 1.36952 1.14151 0.86381 0.80933 0.80334 0.78415 1.17317 1.20720 1.16561 1.23973 0.84568 0.99151 1.00674 1.67980 1.06799 1.32612 1.14142 0.85192 0.90908 0.90757 0.78679 0.75271 0.90909 0.89878 0.79445 0.91638 0.89131 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -8.98 10.42 -55.53 -0.58 -9.56 16 3 C 0.53 14.17 7.97 70.52 0.56 14.73 16 4 O -0.50 -13.09 16.21 20.20 0.33 -12.76 16 5 C 0.13 3.80 6.79 41.97 0.28 4.09 16 6 C -0.17 -3.51 9.71 22.71 0.22 -3.29 16 7 C 0.18 3.78 11.30 84.78 0.96 4.74 16 8 N -0.54 -17.01 8.18 -198.01 -1.62 -18.63 16 9 C 0.45 16.74 6.77 261.53 1.77 18.51 16 10 N -0.42 -17.65 6.51 -738.89 -4.81 -22.46 16 11 C 0.00 0.12 6.49 83.61 0.54 0.66 16 12 C 0.19 9.20 1.10 -11.18 -0.01 9.19 16 13 O -0.55 -26.20 13.32 -148.98 -1.98 -28.19 16 14 C -0.54 -29.44 9.27 25.60 0.24 -29.20 16 15 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 16 C 0.03 1.62 5.47 84.66 0.46 2.08 16 17 N -0.92 -53.60 13.96 21.45 0.30 -53.30 16 18 Si 0.91 40.03 24.41 68.60 1.67 41.70 16 19 H -0.25 -10.15 7.06 99.48 0.70 -9.45 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.24 -9.99 5.46 99.48 0.54 -9.45 16 22 C 0.04 1.87 6.78 83.62 0.57 2.44 16 23 N -0.50 -17.58 10.28 -187.14 -1.92 -19.51 16 24 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.20 2.65 7.73 -2.91 -0.02 2.63 16 28 H 0.23 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.07 3.22 7.85 -2.38 -0.02 3.20 16 30 H 0.08 3.60 7.11 -2.39 -0.02 3.58 16 31 H 0.35 15.86 3.17 -74.05 -0.24 15.63 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.09 3.67 8.14 -2.38 -0.02 3.65 16 34 H 0.11 4.61 6.57 -2.39 -0.02 4.59 16 Total: -1.00 -69.80 294.55 -1.07 -70.88 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.75 Total: 26.28 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: 6.79 Total: 25.55 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -8.05 Total: -113.90 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -2.24 Total: -50.51 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.67 Total: 41.70 kcal Total: -69.80 -1.07 -70.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337941176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.177 kcal (2) G-P(sol) polarization free energy of solvation -69.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds