Wall clock time and date at job start Tue Mar 31 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38866 * 120.00110 * 2 1 4 4 C 1.38960 * 120.17315 * 5.46567 * 3 2 1 5 5 C 1.37960 * 120.06035 * 180.02562 * 4 3 2 6 6 C 1.38607 * 120.42443 * 0.02562 * 5 4 3 7 7 N 1.48025 * 119.82253 * 179.97438 * 6 5 4 8 8 O 1.21797 * 119.99951 * 359.97438 * 7 6 5 9 9 O 1.21799 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37748 * 120.35362 * 359.71861 * 6 5 4 11 11 C 1.39736 * 119.92392 * 0.55314 * 10 6 5 12 12 C 1.47430 * 120.20569 * 179.72278 * 11 10 6 13 13 O 1.21608 * 120.00010 * 174.09438 * 12 11 10 14 14 N 1.34772 * 120.00336 * 354.08713 * 12 11 10 15 15 C 1.46500 * 120.00390 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47181 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00662 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00376 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 60.00295 * 20 18 16 22 22 H 1.48500 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47032 * 300.00215 * 20 18 16 24 24 H 1.09004 * 109.47360 * 60.00272 * 1 2 3 25 25 H 1.09005 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47403 * 299.99839 * 1 2 3 27 27 H 0.96998 * 119.99558 * 180.02562 * 2 1 3 28 28 H 1.07996 * 119.96940 * 0.04138 * 4 3 2 29 29 H 1.08008 * 119.78456 * 180.02562 * 5 4 3 30 30 H 1.08003 * 120.03924 * 180.30289 * 10 6 5 31 31 H 0.97004 * 120.00207 * 0.02562 * 14 12 11 32 32 H 1.08993 * 109.47271 * 300.00478 * 15 14 12 33 33 H 1.09006 * 109.47016 * 60.00532 * 15 14 12 34 34 H 0.97002 * 119.99525 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2026 0.0000 4 6 1.4729 2.4054 0.1144 5 6 2.1651 3.5988 0.1136 6 6 3.5463 3.6091 -0.0014 7 7 4.2754 4.8973 -0.0013 8 8 3.6616 5.9445 0.0992 9 8 5.4891 4.9101 -0.1027 10 6 4.2445 2.4267 -0.1105 11 6 3.5579 1.2098 -0.1171 12 6 4.2985 -0.0591 -0.2397 13 8 3.7105 -1.1187 -0.1374 14 7 5.6271 -0.0449 -0.4654 15 6 6.3631 -1.3057 -0.5867 16 6 7.8208 -1.0146 -0.8344 17 1 8.1648 0.0073 -0.8950 18 6 8.7157 -2.0530 -0.9827 19 7 8.2970 -3.2976 -0.9084 20 14 10.5227 -1.6923 -1.2891 21 1 11.0700 -0.9065 -0.1541 22 1 11.2687 -2.9704 -1.4122 23 1 10.6659 -0.9132 -2.5452 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9499 -0.8401 -0.0004 28 1 0.3967 2.4060 0.2043 29 1 1.6271 4.5311 0.2032 30 1 5.3212 2.4405 -0.1950 31 1 6.0962 0.8003 -0.5468 32 1 6.2588 -1.8775 0.3353 33 1 5.9608 -1.8826 -1.4195 34 1 8.9266 -4.0281 -1.0131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339407519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:19 Heat of formation + Delta-G solvation = -12.759557 kcal Electronic energy + Delta-G solvation = -21024.829229 eV Core-core repulsion = 17539.972675 eV Total energy + Delta-G solvation = -3484.856554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00653 -40.44706 -38.28660 -36.39254 -36.17221 -34.39129 -32.65689 -31.58696 -30.86134 -27.64406 -26.97325 -25.07919 -24.35923 -22.66348 -21.67704 -20.40366 -19.26645 -18.57486 -17.77274 -17.35415 -17.05686 -16.46048 -15.70710 -15.33119 -15.08236 -14.86735 -14.48646 -14.34838 -14.01076 -13.45866 -12.99997 -12.97405 -12.48298 -12.11780 -12.00644 -11.99379 -11.40238 -11.09322 -11.04054 -10.99859 -10.92868 -10.79966 -10.39183 -9.57262 -9.54775 -9.46936 -8.86402 -8.24082 -7.92550 -6.24878 -4.32546 0.05013 0.58959 1.47260 1.58618 2.82808 3.12184 3.23558 3.28180 3.29873 3.66411 3.70376 4.24833 4.29425 4.43125 4.67188 4.72761 4.90181 5.07083 5.12100 5.16650 5.32443 5.33516 5.43217 5.64173 5.65244 5.98512 6.51588 6.80105 7.02054 7.12041 7.34492 7.52776 7.55882 7.81637 7.84839 8.34399 8.57977 8.81664 9.34364 10.85088 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.004893 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.731822 B = 5721.007180 C = 7520.425914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.706 5.706 3 C 0.313 3.687 4 C -0.211 4.211 5 C 0.012 3.988 6 C -0.122 4.122 7 N 0.045 4.955 8 O -0.183 6.183 9 O -0.174 6.174 10 C 0.031 3.969 11 C -0.212 4.212 12 C 0.556 3.444 13 O -0.561 6.561 14 N -0.695 5.695 15 C 0.248 3.752 16 C -0.548 4.548 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.429 0.571 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.394 0.606 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 9.931 1.902 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C 0.196 3.804 4 C -0.235 4.235 5 C -0.009 4.009 6 C -0.209 4.209 7 N 0.558 4.442 8 O -0.394 6.394 9 O -0.387 6.387 10 C 0.010 3.990 11 C -0.221 4.221 12 C 0.343 3.657 13 O -0.443 6.443 14 N -0.341 5.341 15 C 0.128 3.872 16 C -0.586 4.586 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.281 0.719 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.228 0.772 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.566 8.220 1.950 18.595 hybrid contribution 1.533 0.588 -0.198 1.653 sum -15.033 8.808 1.752 17.511 Atomic orbital electron populations 1.21830 0.79972 1.03633 1.01590 1.45932 1.06804 1.07927 1.73370 1.18139 0.89815 0.87478 0.84964 1.20599 1.00713 0.89476 1.12678 1.20784 0.90798 0.99747 0.89565 1.20550 0.92639 0.83182 1.24483 1.43468 1.01087 1.02666 0.96929 1.94484 1.69429 1.21049 1.54459 1.94553 0.96000 1.94185 1.53966 1.20965 1.01469 0.88935 0.87636 1.19565 0.92271 0.93846 1.16413 1.17746 0.83137 0.86979 0.77830 1.90343 1.67435 1.31880 1.54638 1.46442 1.06608 1.12741 1.68318 1.19239 0.90323 0.79686 0.97911 1.21169 0.91879 0.93541 1.52051 0.91687 1.24934 0.99593 0.94720 0.94549 1.69958 1.35585 0.98541 1.48204 0.86439 0.83587 0.77698 0.79054 1.19890 1.21040 1.19923 0.92080 0.89868 0.92107 0.71940 0.83463 0.83027 0.82659 0.77153 0.95025 0.95040 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 9.97 59.85 0.60 1.12 16 2 N -0.71 -8.28 5.74 -65.20 -0.37 -8.66 16 3 C 0.31 3.89 6.65 -83.62 -0.56 3.33 16 4 C -0.21 -2.02 9.30 -39.42 -0.37 -2.39 16 5 C 0.01 0.12 9.54 -39.55 -0.38 -0.26 16 6 C -0.12 -1.60 6.84 -79.99 -0.55 -2.15 16 7 N 0.04 0.67 4.45 33.94 0.15 0.82 16 8 O -0.18 -2.75 18.43 -29.46 -0.54 -3.30 16 9 O -0.17 -2.84 18.43 -29.46 -0.54 -3.39 16 10 C 0.03 0.42 9.02 -39.20 -0.35 0.07 16 11 C -0.21 -3.12 5.89 -104.80 -0.62 -3.74 16 12 C 0.56 10.35 7.75 -12.52 -0.10 10.25 16 13 O -0.56 -11.60 13.64 5.27 0.07 -11.53 16 14 N -0.70 -13.93 5.50 -62.57 -0.34 -14.27 16 15 C 0.25 6.25 5.43 -5.20 -0.03 6.22 16 16 C -0.55 -14.43 9.28 -34.44 -0.32 -14.75 16 17 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 20 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H 0.06 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.34 7.73 -51.93 -0.40 -0.06 16 27 H 0.43 6.15 5.34 -40.94 -0.22 5.93 16 28 H 0.15 0.94 6.72 -52.49 -0.35 0.59 16 29 H 0.15 1.24 7.59 -52.48 -0.40 0.84 16 30 H 0.16 2.07 5.98 -52.48 -0.31 1.75 16 31 H 0.39 6.95 6.39 -40.82 -0.26 6.69 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -30.90 303.66 -7.22 -38.12 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.17 Total: 7.27 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.76 Total: -0.59 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.17 Total: -46.69 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.01 Total: -18.21 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.90 -7.22 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339407519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.359 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds