Wall clock time and date at job start Tue Mar 31 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38866 * 120.00110 * 2 1 4 4 C 1.38960 * 120.17315 * 5.46567 * 3 2 1 5 5 C 1.37960 * 120.06035 * 180.02562 * 4 3 2 6 6 C 1.38607 * 120.42443 * 0.02562 * 5 4 3 7 7 N 1.48025 * 119.82253 * 179.97438 * 6 5 4 8 8 O 1.21797 * 119.99951 * 359.97438 * 7 6 5 9 9 O 1.21799 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37748 * 120.35362 * 359.71861 * 6 5 4 11 11 C 1.39736 * 119.92392 * 0.55314 * 10 6 5 12 12 C 1.47430 * 120.20569 * 179.72278 * 11 10 6 13 13 O 1.21608 * 120.00010 * 174.09438 * 12 11 10 14 14 N 1.34772 * 120.00336 * 354.08713 * 12 11 10 15 15 C 1.46500 * 120.00390 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47181 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00662 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00376 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47075 * 60.00295 * 20 18 16 22 22 H 1.48500 * 109.47256 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47032 * 300.00215 * 20 18 16 24 24 H 1.09004 * 109.47360 * 60.00272 * 1 2 3 25 25 H 1.09005 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47403 * 299.99839 * 1 2 3 27 27 H 0.96998 * 119.99558 * 180.02562 * 2 1 3 28 28 H 1.07996 * 119.96940 * 0.04138 * 4 3 2 29 29 H 1.08008 * 119.78456 * 180.02562 * 5 4 3 30 30 H 1.08003 * 120.03924 * 180.30289 * 10 6 5 31 31 H 0.97004 * 120.00207 * 0.02562 * 14 12 11 32 32 H 1.08993 * 109.47271 * 300.00478 * 15 14 12 33 33 H 1.09006 * 109.47016 * 60.00532 * 15 14 12 34 34 H 0.97002 * 119.99525 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1593 1.2026 0.0000 4 6 1.4729 2.4054 0.1144 5 6 2.1651 3.5988 0.1136 6 6 3.5463 3.6091 -0.0014 7 7 4.2754 4.8973 -0.0013 8 8 3.6616 5.9445 0.0992 9 8 5.4891 4.9101 -0.1027 10 6 4.2445 2.4267 -0.1105 11 6 3.5579 1.2098 -0.1171 12 6 4.2985 -0.0591 -0.2397 13 8 3.7105 -1.1187 -0.1374 14 7 5.6271 -0.0449 -0.4654 15 6 6.3631 -1.3057 -0.5867 16 6 7.8208 -1.0146 -0.8344 17 1 8.1648 0.0073 -0.8950 18 6 8.7157 -2.0530 -0.9827 19 7 8.2970 -3.2976 -0.9084 20 14 10.5227 -1.6923 -1.2891 21 1 11.0700 -0.9065 -0.1541 22 1 11.2687 -2.9704 -1.4122 23 1 10.6659 -0.9132 -2.5452 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9499 -0.8401 -0.0004 28 1 0.3967 2.4060 0.2043 29 1 1.6271 4.5311 0.2032 30 1 5.3212 2.4405 -0.1950 31 1 6.0962 0.8003 -0.5468 32 1 6.2588 -1.8775 0.3353 33 1 5.9608 -1.8826 -1.4195 34 1 8.9266 -4.0281 -1.0131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339407519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:19 Heat of formation + Delta-G solvation = -33.909590 kcal Electronic energy + Delta-G solvation = -21025.746363 eV Core-core repulsion = 17539.972675 eV Total energy + Delta-G solvation = -3485.773688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.11941 -41.64144 -39.61474 -37.54351 -37.17541 -36.10000 -34.50056 -32.78191 -31.78696 -29.39726 -27.99609 -26.04372 -25.72885 -24.28717 -22.71721 -21.84458 -20.55689 -19.68651 -18.94345 -18.47450 -18.43451 -17.72890 -17.28336 -16.80902 -16.43454 -16.27785 -15.67443 -15.36334 -15.09787 -14.56331 -14.30512 -14.15228 -14.01399 -13.67081 -13.17312 -13.03131 -12.90690 -12.71946 -12.56782 -12.25789 -12.19078 -12.18584 -11.66392 -11.55478 -11.00841 -10.84323 -10.56300 -9.99639 -8.92868 -8.32840 -6.48874 -1.02638 -0.42762 0.42920 0.52559 1.42648 1.45521 1.53642 1.62511 2.19986 2.25887 2.42503 2.46938 3.02730 3.32612 3.36922 3.73188 3.77515 4.07154 4.30457 4.38087 4.42689 4.61407 4.73488 4.73996 4.88008 5.03398 5.10855 5.18690 5.33215 5.43357 5.55627 5.78573 5.98214 6.40275 6.59772 6.63773 6.67976 7.15011 7.28540 8.78631 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.004893 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.731822 B = 5721.007180 C = 7520.425914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.711 5.711 3 C 0.311 3.689 4 C -0.187 4.187 5 C 0.026 3.974 6 C -0.133 4.133 7 N 0.047 4.953 8 O -0.166 6.166 9 O -0.225 6.225 10 C 0.034 3.966 11 C -0.234 4.234 12 C 0.555 3.445 13 O -0.587 6.587 14 N -0.699 5.699 15 C 0.267 3.733 16 C -0.562 4.562 17 H 0.079 0.921 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.980 3.020 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.264 1.264 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.417 0.583 28 H 0.192 0.808 29 H 0.184 0.816 30 H 0.149 0.851 31 H 0.405 0.595 32 H -0.003 1.003 33 H -0.002 1.002 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.662 11.893 2.008 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.341 5.341 3 C 0.192 3.808 4 C -0.210 4.210 5 C 0.005 3.995 6 C -0.220 4.220 7 N 0.556 4.444 8 O -0.384 6.384 9 O -0.426 6.426 10 C 0.013 3.987 11 C -0.243 4.243 12 C 0.345 3.655 13 O -0.471 6.471 14 N -0.347 5.347 15 C 0.145 3.855 16 C -0.600 4.600 17 H 0.097 0.903 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.189 1.189 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.264 0.736 28 H 0.209 0.791 29 H 0.201 0.799 30 H 0.167 0.833 31 H 0.242 0.758 32 H 0.015 0.985 33 H 0.016 0.984 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.446 10.199 2.050 21.177 hybrid contribution 1.855 -0.054 -0.200 1.867 sum -16.591 10.144 1.850 19.535 Atomic orbital electron populations 1.22193 0.76925 1.05129 1.03616 1.46179 1.08878 1.07128 1.71926 1.18393 0.88956 0.88923 0.84540 1.20978 1.02440 0.87453 1.10149 1.21187 0.89351 1.01381 0.87560 1.20670 0.93654 0.81813 1.25898 1.43697 1.00959 1.03216 0.96486 1.94445 1.69144 1.21690 1.53104 1.94566 0.96855 1.94505 1.56683 1.20863 1.01358 0.89145 0.87361 1.19136 0.93316 0.91774 1.20096 1.18332 0.82465 0.88383 0.76347 1.90339 1.67896 1.33480 1.55387 1.46161 1.07423 1.11425 1.69682 1.18645 0.90799 0.81246 0.94790 1.21565 0.92380 0.94361 1.51688 0.90272 1.25948 1.04611 0.94372 0.94004 1.70100 1.37362 0.99690 1.49300 0.85281 0.77414 0.77648 0.79382 1.18884 1.20781 1.18877 0.90118 0.88994 0.89661 0.73600 0.79098 0.79906 0.83332 0.75846 0.98461 0.98421 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 9.97 127.77 1.27 1.94 16 2 N -0.71 -15.31 5.74 -360.21 -2.07 -17.38 16 3 C 0.31 7.01 6.65 38.71 0.26 7.27 16 4 C -0.19 -2.72 9.30 22.38 0.21 -2.52 16 5 C 0.03 0.43 9.54 22.29 0.21 0.64 16 6 C -0.13 -3.26 6.84 36.35 0.25 -3.01 16 7 N 0.05 1.35 4.45 -46.52 -0.21 1.15 16 8 O -0.17 -4.62 18.43 18.89 0.35 -4.27 16 9 O -0.22 -7.45 18.43 18.89 0.35 -7.11 16 10 C 0.03 0.92 9.02 22.52 0.20 1.12 16 11 C -0.23 -6.82 5.89 -19.98 -0.12 -6.94 16 12 C 0.56 21.47 7.75 86.67 0.67 22.14 16 13 O -0.59 -25.43 13.64 -4.06 -0.06 -25.48 16 14 N -0.70 -29.47 5.50 -470.12 -2.58 -32.05 16 15 C 0.27 14.26 5.43 85.63 0.46 14.72 16 16 C -0.56 -30.43 9.28 25.60 0.24 -30.19 16 17 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 18 C 0.01 0.60 5.46 84.65 0.46 1.06 16 19 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 20 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H 0.08 0.58 8.12 -2.38 -0.02 0.56 16 25 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.08 0.53 7.73 -2.39 -0.02 0.51 16 27 H 0.42 11.82 5.34 -94.68 -0.51 11.31 16 28 H 0.19 1.15 6.72 -2.91 -0.02 1.13 16 29 H 0.18 1.96 7.59 -2.91 -0.02 1.94 16 30 H 0.15 4.12 5.98 -2.91 -0.02 4.10 16 31 H 0.41 14.96 6.39 -92.71 -0.59 14.37 16 32 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -70.47 303.66 2.29 -68.18 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.08 Total: 20.65 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.12 Total: 6.25 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -4.58 Total: -102.65 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: 0.64 Total: -36.86 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -70.47 2.29 -68.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339407519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.275 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds