Wall clock time and date at job start Tue Mar 31 2020 00:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99816 * 2 1 4 4 N 1.34771 * 120.00230 * 180.02562 * 2 1 3 5 5 N 1.40102 * 120.00355 * 180.02562 * 4 2 1 6 6 C 1.34779 * 120.00196 * 180.02562 * 5 4 2 7 7 O 1.21580 * 120.00018 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99775 * 359.97438 * 6 5 4 9 9 C 1.40023 * 119.99499 * 175.47713 * 8 6 5 10 10 C 1.38921 * 119.99618 * 215.12333 * 9 8 6 11 11 C 1.38000 * 119.99896 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.00353 * 0.02562 * 11 10 9 13 13 O 1.35777 * 120.00240 * 179.97438 * 12 11 10 14 14 C 1.34812 * 116.99973 * 5.36033 * 13 12 11 15 15 H 1.07998 * 119.99845 * 354.95341 * 14 13 12 16 16 C 1.38633 * 120.00076 * 174.96139 * 14 13 12 17 17 N 1.31578 * 119.99906 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99986 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46828 * 90.00053 * 18 16 14 20 20 H 1.48496 * 109.46965 * 209.99782 * 18 16 14 21 21 H 1.48491 * 109.47264 * 330.00170 * 18 16 14 22 22 C 1.38911 * 119.99915 * 0.23630 * 12 11 10 23 23 C 1.38003 * 119.99820 * 359.48464 * 22 12 11 24 24 H 1.09001 * 109.47082 * 240.00388 * 1 2 3 25 25 H 1.09004 * 109.47216 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47495 * 119.99990 * 1 2 3 27 27 H 0.97003 * 119.99950 * 359.97438 * 4 2 1 28 28 H 0.97003 * 119.99695 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00051 * 355.46795 * 8 6 5 30 30 H 1.08003 * 120.00039 * 0.02562 * 10 9 8 31 31 H 1.08003 * 120.00258 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99872 * 180.02562 * 17 16 14 33 33 H 1.07995 * 119.99736 * 179.72795 * 22 12 11 34 34 H 1.08001 * 119.99749 * 180.25715 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 7 3.5819 -1.1672 0.0000 6 6 4.2558 -2.3344 -0.0010 7 8 5.4716 -2.3344 -0.0010 8 7 3.5819 -3.5016 -0.0021 9 6 4.2788 -4.7122 -0.0988 10 6 3.7263 -5.7776 -0.7984 11 6 4.4129 -6.9710 -0.8933 12 6 5.6561 -7.1070 -0.2889 13 8 6.3314 -8.2813 -0.3818 14 6 5.7928 -9.2366 -1.1659 15 1 4.8255 -9.0805 -1.6201 16 6 6.4806 -10.4194 -1.3892 17 7 5.9547 -11.3519 -2.1540 18 14 8.1540 -10.6892 -0.6040 19 1 7.9801 -11.3310 0.7238 20 1 8.9736 -11.5689 -1.4755 21 1 8.8385 -9.3822 -0.4362 22 6 6.2061 -6.0435 0.4153 23 6 5.5222 -4.8482 0.5054 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 1.6959 -2.0072 -0.0005 28 1 4.0669 -0.3271 0.0004 29 1 2.6141 -3.5029 0.0643 30 1 2.7595 -5.6720 -1.2681 31 1 3.9836 -7.7992 -1.4376 32 1 6.4358 -12.1797 -2.3099 33 1 7.1707 -6.1507 0.8890 34 1 5.9517 -4.0200 1.0494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342615261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:45 Heat of formation + Delta-G solvation = -16.542448 kcal Electronic energy + Delta-G solvation = -20495.936249 eV Core-core repulsion = 17010.915657 eV Total energy + Delta-G solvation = -3485.020592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95804 -39.78106 -38.90937 -36.86169 -35.98471 -34.03772 -32.37683 -32.11755 -30.36554 -29.29852 -27.99881 -25.29079 -22.56179 -22.39548 -21.78000 -20.58678 -19.42219 -18.14709 -17.85713 -17.40336 -16.69614 -16.14837 -15.87655 -15.30207 -15.20042 -14.78498 -14.33542 -13.89983 -13.84678 -13.77839 -13.17831 -12.97302 -12.84269 -12.43122 -12.32978 -11.93024 -11.85969 -11.55154 -11.01823 -10.86132 -10.67227 -10.25743 -10.22736 -9.80971 -9.37200 -8.85150 -8.69583 -8.35226 -7.13093 -6.44933 -4.11014 1.49787 1.94058 2.03681 2.10965 2.81509 3.02291 3.22618 3.24770 3.40350 4.00120 4.22040 4.41987 4.56741 4.72726 4.81851 4.83773 5.08320 5.27867 5.40339 5.62572 5.90933 5.97519 6.03955 6.06772 6.35354 6.61890 6.69662 6.90748 6.95622 7.04396 7.17317 7.40822 7.52977 7.73922 7.91495 7.99276 8.32341 8.90337 9.52304 10.62498 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.003052 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.739671 B = 9170.877665 C = 9656.537107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.512 3.488 3 O -0.541 6.541 4 N -0.531 5.531 5 N -0.536 5.536 6 C 0.708 3.292 7 O -0.555 6.555 8 N -0.671 5.671 9 C 0.054 3.946 10 C -0.090 4.090 11 C -0.206 4.206 12 C 0.154 3.846 13 O -0.215 6.215 14 C -0.390 4.390 15 H 0.107 0.893 16 C 0.064 3.936 17 N -0.879 5.879 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.258 1.258 22 C -0.177 4.177 23 C -0.068 4.068 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.421 0.579 28 H 0.442 0.558 29 H 0.393 0.607 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.280 0.720 33 H 0.122 0.878 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.485 16.762 4.639 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.416 6.416 4 N -0.283 5.283 5 N -0.294 5.294 6 C 0.409 3.591 7 O -0.427 6.427 8 N -0.321 5.321 9 C -0.039 4.039 10 C -0.111 4.111 11 C -0.226 4.226 12 C 0.101 3.899 13 O -0.120 6.120 14 C -0.465 4.465 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.182 1.182 22 C -0.197 4.197 23 C -0.088 4.088 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.262 0.738 28 H 0.288 0.712 29 H 0.228 0.772 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.940 17.070 4.621 20.795 hybrid contribution -0.104 -0.404 0.111 0.432 sum -11.044 16.666 4.732 20.545 Atomic orbital electron populations 1.21881 0.89163 1.06506 1.05045 1.21139 0.90748 0.82198 0.75996 1.90781 1.70443 1.30821 1.49518 1.45085 0.95702 1.10277 1.77238 1.44698 0.93670 1.09285 1.81748 1.15751 0.85159 0.79671 0.78566 1.91043 1.10272 1.83852 1.57498 1.42286 1.09092 1.03707 1.76967 1.17064 0.95904 0.84719 1.06177 1.20488 0.99785 0.92751 0.98027 1.21078 0.96307 0.98630 1.06583 1.19168 0.90815 0.86074 0.93842 1.83587 1.47541 1.19848 1.60998 1.20758 1.05138 0.94229 1.26397 0.87592 1.24471 0.99395 0.94316 0.95804 1.69652 1.39171 1.07087 1.35775 0.86175 0.82519 0.79139 0.79089 1.19857 1.20808 1.18237 1.20153 1.01715 0.91662 1.06144 1.20767 0.93664 0.96578 0.97830 0.88657 0.87987 0.88629 0.73812 0.71164 0.77203 0.86874 0.84385 0.91012 0.86007 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.32 36.00 0.37 -0.07 16 2 C 0.51 3.83 8.06 -10.99 -0.09 3.74 16 3 O -0.54 -6.59 16.92 5.55 0.09 -6.49 16 4 N -0.53 -3.69 6.26 31.22 0.20 -3.49 16 5 N -0.54 -5.68 6.26 27.63 0.17 -5.50 16 6 C 0.71 9.62 8.52 -86.91 -0.74 8.88 16 7 O -0.55 -9.86 14.62 5.29 0.08 -9.78 16 8 N -0.67 -8.13 5.30 -14.18 -0.08 -8.21 16 9 C 0.05 0.87 6.30 -83.61 -0.53 0.35 16 10 C -0.09 -1.48 9.96 -39.42 -0.39 -1.87 16 11 C -0.21 -4.19 9.16 -39.42 -0.36 -4.55 16 12 C 0.15 3.46 6.65 -39.09 -0.26 3.20 16 13 O -0.21 -5.56 8.58 0.02 0.00 -5.56 16 14 C -0.39 -10.72 9.94 30.88 0.31 -10.41 16 15 H 0.11 2.94 5.43 -52.49 -0.28 2.65 16 16 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 17 N -0.88 -24.98 13.96 55.48 0.77 -24.20 16 18 Si 0.91 21.46 28.62 -169.99 -4.86 16.59 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.18 -3.55 9.99 -39.42 -0.39 -3.95 16 23 C -0.07 -1.24 8.69 -39.42 -0.34 -1.59 16 24 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 25 H 0.10 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.42 1.56 6.71 -182.59 -1.23 0.34 16 28 H 0.44 4.95 8.10 -182.59 -1.48 3.47 16 29 H 0.39 3.08 6.76 -40.82 -0.28 2.81 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.14 2.91 5.63 -52.48 -0.30 2.62 16 32 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.13 2.38 6.22 -52.49 -0.33 2.05 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -34.70 302.59 -6.72 -41.42 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.14 Total: 5.28 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.52 Total: -4.61 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 1.07 Total: -41.41 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.86 Total: 16.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.70 -6.72 -41.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342615261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.877 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds