Wall clock time and date at job start Tue Mar 31 2020 00:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99816 * 2 1 4 4 N 1.34771 * 120.00230 * 180.02562 * 2 1 3 5 5 N 1.40102 * 120.00355 * 180.02562 * 4 2 1 6 6 C 1.34779 * 120.00196 * 180.02562 * 5 4 2 7 7 O 1.21580 * 120.00018 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99775 * 359.97438 * 6 5 4 9 9 C 1.40023 * 119.99499 * 175.47713 * 8 6 5 10 10 C 1.38921 * 119.99618 * 215.12333 * 9 8 6 11 11 C 1.38000 * 119.99896 * 180.02562 * 10 9 8 12 12 C 1.38905 * 120.00353 * 0.02562 * 11 10 9 13 13 O 1.35777 * 120.00240 * 179.97438 * 12 11 10 14 14 C 1.34812 * 116.99973 * 5.36033 * 13 12 11 15 15 H 1.07998 * 119.99845 * 354.95341 * 14 13 12 16 16 C 1.38633 * 120.00076 * 174.96139 * 14 13 12 17 17 N 1.31578 * 119.99906 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99986 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46828 * 90.00053 * 18 16 14 20 20 H 1.48496 * 109.46965 * 209.99782 * 18 16 14 21 21 H 1.48491 * 109.47264 * 330.00170 * 18 16 14 22 22 C 1.38911 * 119.99915 * 0.23630 * 12 11 10 23 23 C 1.38003 * 119.99820 * 359.48464 * 22 12 11 24 24 H 1.09001 * 109.47082 * 240.00388 * 1 2 3 25 25 H 1.09004 * 109.47216 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47495 * 119.99990 * 1 2 3 27 27 H 0.97003 * 119.99950 * 359.97438 * 4 2 1 28 28 H 0.97003 * 119.99695 * 359.97438 * 5 4 2 29 29 H 0.97002 * 120.00051 * 355.46795 * 8 6 5 30 30 H 1.08003 * 120.00039 * 0.02562 * 10 9 8 31 31 H 1.08003 * 120.00258 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99872 * 180.02562 * 17 16 14 33 33 H 1.07995 * 119.99736 * 179.72795 * 22 12 11 34 34 H 1.08001 * 119.99749 * 180.25715 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 7 3.5819 -1.1672 0.0000 6 6 4.2558 -2.3344 -0.0010 7 8 5.4716 -2.3344 -0.0010 8 7 3.5819 -3.5016 -0.0021 9 6 4.2788 -4.7122 -0.0988 10 6 3.7263 -5.7776 -0.7984 11 6 4.4129 -6.9710 -0.8933 12 6 5.6561 -7.1070 -0.2889 13 8 6.3314 -8.2813 -0.3818 14 6 5.7928 -9.2366 -1.1659 15 1 4.8255 -9.0805 -1.6201 16 6 6.4806 -10.4194 -1.3892 17 7 5.9547 -11.3519 -2.1540 18 14 8.1540 -10.6892 -0.6040 19 1 7.9801 -11.3310 0.7238 20 1 8.9736 -11.5689 -1.4755 21 1 8.8385 -9.3822 -0.4362 22 6 6.2061 -6.0435 0.4153 23 6 5.5222 -4.8482 0.5054 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8899 27 1 1.6959 -2.0072 -0.0005 28 1 4.0669 -0.3271 0.0004 29 1 2.6141 -3.5029 0.0643 30 1 2.7595 -5.6720 -1.2681 31 1 3.9836 -7.7992 -1.4376 32 1 6.4358 -12.1797 -2.3099 33 1 7.1707 -6.1507 0.8890 34 1 5.9517 -4.0200 1.0494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342615261.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:44 Heat of formation + Delta-G solvation = -43.681854 kcal Electronic energy + Delta-G solvation = -20497.113102 eV Core-core repulsion = 17010.915657 eV Total energy + Delta-G solvation = -3486.197445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01459 -40.87462 -40.28809 -38.38160 -36.92802 -35.37365 -34.32830 -32.84946 -31.89779 -30.00286 -29.28214 -27.16588 -24.03738 -23.70605 -22.50950 -21.92590 -20.51528 -19.64953 -19.18903 -18.88841 -17.79727 -17.02520 -16.87920 -16.53428 -16.31448 -16.15271 -15.67376 -15.63460 -15.30476 -14.98521 -14.46404 -14.17318 -14.10865 -13.48657 -13.39186 -13.36215 -13.15422 -12.78067 -12.58961 -12.45996 -12.00504 -11.73415 -11.48175 -11.23956 -11.05888 -10.69938 -9.86365 -9.57427 -8.67768 -8.47838 -6.18600 0.47354 0.51421 0.77501 1.33931 1.36273 1.40716 1.53639 1.80435 1.92455 2.30007 2.77531 3.04132 3.19068 3.45639 3.94374 4.04968 4.12419 4.47580 4.52803 4.55686 4.68941 4.72796 5.02054 5.07343 5.16124 5.27049 5.33067 5.47108 5.53366 5.63463 5.79479 5.90636 6.18595 6.27024 6.55092 6.87234 7.13403 7.29997 7.61890 8.63304 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.046676 B = 0.003052 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.739671 B = 9170.877665 C = 9656.537107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.511 3.489 3 O -0.592 6.592 4 N -0.518 5.518 5 N -0.531 5.531 6 C 0.710 3.290 7 O -0.599 6.599 8 N -0.655 5.655 9 C 0.084 3.916 10 C -0.078 4.078 11 C -0.213 4.213 12 C 0.115 3.885 13 O -0.245 6.245 14 C -0.396 4.396 15 H 0.089 0.911 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.266 1.266 22 C -0.177 4.177 23 C -0.076 4.076 24 H 0.123 0.877 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.438 0.562 28 H 0.441 0.559 29 H 0.419 0.581 30 H 0.160 0.840 31 H 0.124 0.876 32 H 0.284 0.716 33 H 0.126 0.874 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 18.651 5.252 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.300 3.700 3 O -0.471 6.471 4 N -0.273 5.273 5 N -0.286 5.286 6 C 0.410 3.590 7 O -0.474 6.474 8 N -0.307 5.307 9 C -0.010 4.010 10 C -0.098 4.098 11 C -0.233 4.233 12 C 0.066 3.934 13 O -0.152 6.152 14 C -0.472 4.472 15 H 0.107 0.893 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.190 1.190 22 C -0.197 4.197 23 C -0.096 4.096 24 H 0.141 0.859 25 H 0.117 0.883 26 H 0.140 0.860 27 H 0.283 0.717 28 H 0.287 0.713 29 H 0.258 0.742 30 H 0.178 0.822 31 H 0.142 0.858 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.119 19.000 5.250 23.679 hybrid contribution 0.315 -0.584 -0.027 0.665 sum -12.804 18.416 5.223 23.030 Atomic orbital electron populations 1.21969 0.84830 1.07209 1.07594 1.22168 0.92442 0.81191 0.74160 1.90772 1.71748 1.32703 1.51842 1.45242 0.93620 1.11460 1.76991 1.44468 0.95777 1.08122 1.80211 1.15745 0.84662 0.80327 0.78242 1.91024 1.12460 1.84717 1.59233 1.41989 1.10233 1.01978 1.76490 1.17119 0.94885 0.85791 1.03205 1.20788 1.01101 0.90880 0.97011 1.21151 0.95947 0.99847 1.06333 1.19621 0.92056 0.85958 0.95795 1.83534 1.48572 1.20873 1.62269 1.20748 1.04758 0.95090 1.26632 0.89318 1.25202 1.02723 0.94182 0.96565 1.69724 1.40810 1.07869 1.37839 0.85292 0.78596 0.78663 0.78683 1.19031 1.19456 1.19029 1.20308 1.02145 0.91672 1.05582 1.20926 0.94602 0.95835 0.98213 0.85887 0.88301 0.85981 0.71735 0.71344 0.74175 0.82223 0.85799 0.90639 0.85617 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.18 10.32 71.24 0.74 0.55 16 2 C 0.51 6.10 8.06 87.66 0.71 6.81 16 3 O -0.59 -13.57 16.92 -3.05 -0.05 -13.62 16 4 N -0.52 -5.31 6.26 -173.54 -1.09 -6.40 16 5 N -0.53 -9.89 6.26 -184.75 -1.16 -11.04 16 6 C 0.71 17.36 8.52 179.05 1.53 18.89 16 7 O -0.60 -20.35 14.62 -3.97 -0.06 -20.41 16 8 N -0.66 -13.27 5.30 -317.04 -1.68 -14.95 16 9 C 0.08 2.46 6.30 38.16 0.24 2.70 16 10 C -0.08 -2.31 9.96 22.38 0.22 -2.09 16 11 C -0.21 -8.57 9.16 22.37 0.20 -8.36 16 12 C 0.12 5.26 6.65 22.59 0.15 5.41 16 13 O -0.25 -13.09 8.58 -22.86 -0.20 -13.29 16 14 C -0.40 -22.66 9.94 67.91 0.68 -21.98 16 15 H 0.09 5.19 5.43 -2.91 -0.02 5.17 16 16 C 0.01 0.67 5.49 84.83 0.47 1.14 16 17 N -0.92 -54.01 13.96 21.61 0.30 -53.71 16 18 Si 0.96 45.23 28.62 68.60 1.96 47.19 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.18 -7.09 9.99 22.38 0.22 -6.87 16 23 C -0.08 -2.63 8.69 22.37 0.19 -2.44 16 24 H 0.12 -0.47 8.14 -2.39 -0.02 -0.48 16 25 H 0.10 0.28 8.12 -2.38 -0.02 0.26 16 26 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.44 1.10 6.71 -213.32 -1.43 -0.34 16 28 H 0.44 9.20 8.10 -213.32 -1.73 7.48 16 29 H 0.42 4.35 6.76 -92.71 -0.63 3.72 16 30 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.12 5.35 5.63 -2.91 -0.02 5.34 16 32 H 0.28 15.33 8.31 -92.71 -0.77 14.55 16 33 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.14 4.74 6.22 -2.91 -0.02 4.72 16 Total: -1.00 -79.56 302.59 0.79 -78.77 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -2.59 Total: 13.70 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.34 Total: -6.24 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.62 Total: -86.10 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.31 Total: -47.32 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.96 Total: 47.19 kcal Total: -79.56 0.79 -78.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342615261.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.087 kcal (2) G-P(sol) polarization free energy of solvation -79.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds