Wall clock time and date at job start Tue Mar 31 2020 00:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99921 * 2 1 4 4 N 1.46504 * 109.47065 * 125.00505 * 3 2 1 5 5 C 1.46498 * 119.99836 * 274.94798 * 4 3 2 6 6 C 1.50699 * 109.47228 * 263.11639 * 5 4 3 7 7 H 1.08003 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00205 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47176 * 60.00289 * 10 8 6 12 12 H 1.48493 * 109.47324 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47131 * 300.00561 * 10 8 6 14 14 C 1.34777 * 120.00078 * 94.94519 * 4 3 2 15 15 O 1.21357 * 120.00002 * 3.69602 * 14 4 3 16 16 C 1.49378 * 119.99940 * 183.69216 * 14 4 3 17 17 O 1.21363 * 119.99936 * 354.26712 * 16 14 4 18 18 N 1.34776 * 119.99871 * 174.54360 * 16 14 4 19 19 C 1.39359 * 119.99792 * 179.72262 * 18 16 14 20 20 C 1.42047 * 126.89868 * 359.71916 * 19 18 16 21 21 C 1.35243 * 103.95748 * 179.85174 * 20 19 18 22 22 O 1.34095 * 106.61337 * 0.39840 * 21 20 19 23 23 N 1.20911 * 111.75197 * 359.72701 * 22 21 20 24 24 H 1.07992 * 119.99942 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99592 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00175 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47245 * 5.00222 * 3 2 1 28 28 H 1.09002 * 109.47179 * 245.00069 * 3 2 1 29 29 H 1.09003 * 109.47103 * 23.11641 * 5 4 3 30 30 H 1.08998 * 109.46994 * 143.11379 * 5 4 3 31 31 H 0.96999 * 119.99868 * 179.97438 * 9 8 6 32 32 H 0.97002 * 119.99985 * 359.73007 * 18 16 14 33 33 H 1.08003 * 128.02529 * 359.97438 * 20 19 18 34 34 H 1.07995 * 126.69364 * 180.10370 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5289 1.7631 2.4520 6 6 2.8690 3.2172 2.6542 7 1 3.3800 3.7655 1.8766 8 6 2.5269 3.8480 3.8315 9 7 1.9042 3.1805 4.7783 10 14 2.9491 5.6503 4.0824 11 1 2.2854 6.4649 3.0330 12 1 2.4777 6.0875 5.4209 13 1 4.4203 5.8312 3.9928 14 6 4.2775 0.9597 0.9573 15 8 4.6796 0.6668 -0.1497 16 6 5.2053 0.9078 2.1268 17 8 4.8339 1.2994 3.2139 18 7 6.4567 0.4314 1.9736 19 6 7.3242 0.3884 3.0635 20 6 7.0472 0.8107 4.3911 21 6 8.1963 0.5610 5.0593 22 8 9.0544 0.0459 4.1669 23 7 8.5582 -0.0436 3.0680 24 1 -0.5399 0.9352 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4491 1.6298 2.5184 30 1 3.0168 1.1654 3.2220 31 1 1.6638 3.6242 5.6067 32 1 6.7536 0.1185 1.1048 33 1 6.1308 1.2315 4.7779 34 1 8.3871 0.7454 6.1061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347667459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:50 Heat of formation + Delta-G solvation = 44.251058 kcal Electronic energy + Delta-G solvation = -21757.859439 eV Core-core repulsion = 18275.475050 eV Total energy + Delta-G solvation = -3482.384388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.71033 -40.42576 -38.31502 -36.14630 -35.15211 -33.36319 -32.28103 -32.13960 -31.22679 -27.64246 -26.68929 -24.40464 -23.20671 -22.72472 -21.36056 -20.07588 -19.15773 -18.12009 -17.44472 -17.14988 -16.67147 -16.50704 -15.75298 -15.33058 -15.20290 -14.56873 -14.37487 -13.97228 -13.65368 -13.07631 -12.94206 -12.83217 -12.34793 -11.77805 -11.58727 -11.46029 -11.30701 -11.23264 -10.97379 -10.88836 -10.54866 -10.09541 -9.78912 -9.56434 -9.30390 -8.86352 -8.66733 -8.36982 -7.96854 -6.10474 -4.14044 1.47013 1.88685 2.26360 2.61634 2.64249 3.27220 3.31586 3.34733 3.43744 3.73986 3.92890 4.37448 4.55050 4.82688 5.15652 5.22264 5.25647 5.36340 5.39380 5.63926 5.75682 6.03533 6.12734 6.17390 6.51314 6.56653 6.79630 6.92711 7.11565 7.31338 7.35846 7.77545 7.96802 8.08812 8.15632 8.42814 8.49107 8.87255 9.49381 10.97990 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.007223 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.140274 B = 3875.538933 C = 5634.997801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.138 3.862 4 N -0.551 5.551 5 C 0.222 3.778 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.514 3.486 15 O -0.556 6.556 16 C 0.501 3.499 17 O -0.428 6.428 18 N -0.620 5.620 19 C 0.253 3.747 20 C -0.222 4.222 21 C -0.057 4.057 22 O 0.091 5.909 23 N -0.396 5.396 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.263 0.737 32 H 0.424 0.576 33 H 0.196 0.804 34 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -5.871 -2.135 8.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.015 3.985 4 N -0.281 5.281 5 C 0.103 3.897 6 C -0.562 4.562 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.296 3.704 15 O -0.437 6.437 16 C 0.282 3.718 17 O -0.293 6.293 18 N -0.275 5.275 19 C 0.004 3.996 20 C -0.245 4.245 21 C -0.138 4.138 22 O 0.031 5.969 23 N -0.114 5.114 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.262 0.738 33 H 0.213 0.787 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.553 -6.158 -2.588 8.687 hybrid contribution -0.389 1.285 0.351 1.387 sum 5.164 -4.873 -2.237 7.445 Atomic orbital electron populations 1.23813 0.95702 1.01837 1.00695 1.23282 0.96180 0.98847 0.99749 1.20641 0.92159 0.95474 0.90182 1.48262 1.07018 1.59211 1.13591 1.20124 0.96196 0.96477 0.76876 1.21197 1.38787 0.94589 1.01615 0.92753 1.24801 0.94846 0.98040 0.95520 1.69909 1.39835 1.36436 1.06458 0.86642 0.78905 0.85056 0.77299 1.20303 1.21145 1.20266 1.19431 0.83669 0.79740 0.87600 1.90679 1.76425 1.51393 1.25187 1.20480 0.81672 0.79037 0.90660 1.90878 1.72753 1.39494 1.26206 1.42282 1.11251 1.63198 1.10812 1.20622 0.89259 0.99974 0.89774 1.23245 1.02554 1.07488 0.91210 1.25941 0.89544 1.00213 0.98119 1.84779 1.37202 1.62189 1.12737 1.74027 1.09278 1.25588 1.02499 0.88241 0.88617 0.87652 0.89211 0.89257 0.94691 0.90828 0.92698 0.73833 0.78716 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 14.32 29.01 0.42 -2.02 16 2 C -0.16 -2.45 9.84 -36.03 -0.35 -2.81 16 3 C 0.14 2.38 5.90 -5.19 -0.03 2.35 16 4 N -0.55 -11.32 2.46 -176.97 -0.44 -11.76 16 5 C 0.22 5.30 4.79 -5.19 -0.02 5.28 16 6 C -0.52 -13.78 8.31 -34.44 -0.29 -14.06 16 7 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 9 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.51 10.40 7.67 -11.62 -0.09 10.31 16 15 O -0.56 -11.25 15.98 5.49 0.09 -11.16 16 16 C 0.50 9.92 7.73 -11.62 -0.09 9.83 16 17 O -0.43 -9.52 9.65 5.49 0.05 -9.46 16 18 N -0.62 -10.67 5.41 -11.86 -0.06 -10.73 16 19 C 0.25 4.29 8.17 -154.93 -1.27 3.02 16 20 C -0.22 -3.52 9.86 -39.19 -0.39 -3.90 16 21 C -0.06 -0.68 12.28 29.67 0.36 -0.31 16 22 O 0.09 1.24 11.19 17.03 0.19 1.44 16 23 N -0.40 -6.35 12.10 31.18 0.38 -5.97 16 24 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 25 H 0.10 1.10 8.06 -52.49 -0.42 0.67 16 26 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.09 1.52 7.76 -51.93 -0.40 1.11 16 28 H 0.09 1.49 7.24 -51.93 -0.38 1.12 16 29 H 0.04 0.87 8.02 -51.93 -0.42 0.46 16 30 H 0.07 1.90 5.41 -51.93 -0.28 1.61 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.42 6.54 8.30 -40.82 -0.34 6.20 16 33 H 0.20 3.44 6.22 -52.48 -0.33 3.12 16 34 H 0.22 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -30.20 306.34 -4.67 -34.87 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.37 Total: 6.72 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.85 Total: 9.49 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.61 Total: -52.48 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.33 Total: -19.19 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.20 -4.67 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347667459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.122 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds