Wall clock time and date at job start Tue Mar 31 2020 00:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99921 * 2 1 4 4 N 1.46504 * 109.47065 * 125.00505 * 3 2 1 5 5 C 1.46498 * 119.99836 * 274.94798 * 4 3 2 6 6 C 1.50699 * 109.47228 * 263.11639 * 5 4 3 7 7 H 1.08003 * 120.00267 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00205 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00128 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47176 * 60.00289 * 10 8 6 12 12 H 1.48493 * 109.47324 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47131 * 300.00561 * 10 8 6 14 14 C 1.34777 * 120.00078 * 94.94519 * 4 3 2 15 15 O 1.21357 * 120.00002 * 3.69602 * 14 4 3 16 16 C 1.49378 * 119.99940 * 183.69216 * 14 4 3 17 17 O 1.21363 * 119.99936 * 354.26712 * 16 14 4 18 18 N 1.34776 * 119.99871 * 174.54360 * 16 14 4 19 19 C 1.39359 * 119.99792 * 179.72262 * 18 16 14 20 20 C 1.42047 * 126.89868 * 359.71916 * 19 18 16 21 21 C 1.35243 * 103.95748 * 179.85174 * 20 19 18 22 22 O 1.34095 * 106.61337 * 0.39840 * 21 20 19 23 23 N 1.20911 * 111.75197 * 359.72701 * 22 21 20 24 24 H 1.07992 * 119.99942 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99592 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00175 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47245 * 5.00222 * 3 2 1 28 28 H 1.09002 * 109.47179 * 245.00069 * 3 2 1 29 29 H 1.09003 * 109.47103 * 23.11641 * 5 4 3 30 30 H 1.08998 * 109.46994 * 143.11379 * 5 4 3 31 31 H 0.96999 * 119.99868 * 179.97438 * 9 8 6 32 32 H 0.97002 * 119.99985 * 359.73007 * 18 16 14 33 33 H 1.08003 * 128.02529 * 359.97438 * 20 19 18 34 34 H 1.07995 * 126.69364 * 180.10370 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5289 1.7631 2.4520 6 6 2.8690 3.2172 2.6542 7 1 3.3800 3.7655 1.8766 8 6 2.5269 3.8480 3.8315 9 7 1.9042 3.1805 4.7783 10 14 2.9491 5.6503 4.0824 11 1 2.2854 6.4649 3.0330 12 1 2.4777 6.0875 5.4209 13 1 4.4203 5.8312 3.9928 14 6 4.2775 0.9597 0.9573 15 8 4.6796 0.6668 -0.1497 16 6 5.2053 0.9078 2.1268 17 8 4.8339 1.2994 3.2139 18 7 6.4567 0.4314 1.9736 19 6 7.3242 0.3884 3.0635 20 6 7.0472 0.8107 4.3911 21 6 8.1963 0.5610 5.0593 22 8 9.0544 0.0459 4.1669 23 7 8.5582 -0.0436 3.0680 24 1 -0.5399 0.9352 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 1.4491 1.6298 2.5184 30 1 3.0168 1.1654 3.2220 31 1 1.6638 3.6242 5.6067 32 1 6.7536 0.1185 1.1048 33 1 6.1308 1.2315 4.7779 34 1 8.3871 0.7454 6.1061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347667459.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:50 Heat of formation + Delta-G solvation = 24.881541 kcal Electronic energy + Delta-G solvation = -21758.699364 eV Core-core repulsion = 18275.475050 eV Total energy + Delta-G solvation = -3483.224314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.92211 -41.99876 -39.86619 -37.72202 -36.55248 -35.04611 -33.86367 -33.49470 -32.46505 -29.46098 -28.21400 -25.92587 -24.87356 -24.13060 -22.65542 -21.42246 -20.53102 -19.35466 -18.87619 -18.66043 -18.41526 -18.03721 -17.20782 -16.87830 -16.83611 -16.20403 -15.90889 -15.46615 -14.87945 -14.56872 -14.34852 -14.19671 -14.12859 -13.55308 -13.07049 -12.90777 -12.86591 -12.72117 -12.53138 -12.40303 -12.29304 -11.92571 -11.68206 -10.77758 -10.70001 -10.48167 -10.16923 -9.98668 -9.66348 -8.14925 -6.24582 0.06614 0.65828 0.90437 1.28437 1.40161 1.40834 1.41766 1.48893 2.16513 2.33259 2.41845 2.54458 3.17790 3.18498 3.44261 3.86354 4.01907 4.13337 4.26284 4.45149 4.64895 4.76059 4.80873 4.86531 5.02081 5.23287 5.37624 5.43356 5.66503 5.74064 5.78064 5.85834 6.09445 6.22654 6.58526 6.77462 6.93538 7.27698 7.41944 8.92817 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012144 B = 0.007223 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.140274 B = 3875.538933 C = 5634.997801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.185 4.185 3 C 0.135 3.865 4 N -0.555 5.555 5 C 0.241 3.759 6 C -0.530 4.530 7 H 0.044 0.956 8 C 0.027 3.973 9 N -0.916 5.916 10 Si 0.949 3.051 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.512 3.488 15 O -0.557 6.557 16 C 0.502 3.498 17 O -0.457 6.457 18 N -0.610 5.610 19 C 0.227 3.773 20 C -0.260 4.260 21 C -0.011 4.011 22 O 0.103 5.897 23 N -0.405 5.405 24 H 0.105 0.895 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.265 0.735 32 H 0.430 0.570 33 H 0.174 0.826 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -5.790 -1.786 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.204 4.204 3 C 0.014 3.986 4 N -0.285 5.285 5 C 0.121 3.879 6 C -0.568 4.568 7 H 0.063 0.937 8 C -0.173 4.173 9 N -0.555 5.555 10 Si 0.775 3.225 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.294 3.706 15 O -0.438 6.438 16 C 0.283 3.717 17 O -0.326 6.326 18 N -0.264 5.264 19 C -0.021 4.021 20 C -0.283 4.283 21 C -0.092 4.092 22 O 0.042 5.958 23 N -0.120 5.120 24 H 0.123 0.877 25 H 0.138 0.862 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.270 0.730 33 H 0.191 0.809 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 6.228 -6.097 -2.300 9.014 hybrid contribution -0.539 1.201 0.258 1.342 sum 5.688 -4.896 -2.042 7.778 Atomic orbital electron populations 1.24076 0.95029 1.03284 0.97341 1.23135 0.96820 0.97699 1.02767 1.20805 0.91872 0.96900 0.89025 1.48225 1.07680 1.59213 1.13358 1.19647 0.94941 0.95156 0.78162 1.21376 1.38341 0.95708 1.01410 0.93733 1.25482 0.94822 1.01675 0.95339 1.70002 1.40778 1.37878 1.06832 0.85755 0.78340 0.80806 0.77581 1.19509 1.20419 1.20557 1.19535 0.83694 0.79604 0.87776 1.90666 1.76389 1.51530 1.25206 1.20425 0.82289 0.78903 0.90102 1.90877 1.73510 1.41196 1.26969 1.42059 1.10588 1.62331 1.11471 1.20851 0.89771 1.01374 0.90080 1.23155 1.03575 1.10052 0.91535 1.26742 0.87154 0.96117 0.99233 1.84760 1.37090 1.61478 1.12501 1.74046 1.08712 1.25649 1.03629 0.87682 0.86192 0.87648 0.89183 0.88966 0.95960 0.92641 0.92608 0.73045 0.80866 0.71106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 14.32 67.77 0.97 -3.00 16 2 C -0.19 -5.51 9.84 25.64 0.25 -5.26 16 3 C 0.14 4.67 5.90 85.63 0.50 5.18 16 4 N -0.56 -23.22 2.46 -832.16 -2.05 -25.27 16 5 C 0.24 11.81 4.79 85.63 0.41 12.22 16 6 C -0.53 -28.34 8.31 25.60 0.21 -28.12 16 7 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 8 C 0.03 1.46 5.46 84.65 0.46 1.92 16 9 N -0.92 -51.59 13.29 21.45 0.28 -51.30 16 10 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 C 0.51 21.08 7.67 87.25 0.67 21.75 16 15 O -0.56 -22.60 15.98 -3.27 -0.05 -22.65 16 16 C 0.50 20.43 7.73 87.25 0.67 21.10 16 17 O -0.46 -21.11 9.65 -3.29 -0.03 -21.14 16 18 N -0.61 -21.28 5.41 -310.81 -1.68 -22.96 16 19 C 0.23 7.66 8.17 134.16 1.10 8.76 16 20 C -0.26 -8.10 9.86 22.52 0.22 -7.88 16 21 C -0.01 -0.24 12.28 67.13 0.82 0.59 16 22 O 0.10 2.56 11.19 71.13 0.80 3.36 16 23 N -0.40 -12.45 12.10 -56.35 -0.68 -13.13 16 24 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 25 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 26 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16 27 H 0.09 3.05 7.76 -2.38 -0.02 3.03 16 28 H 0.09 3.08 7.24 -2.39 -0.02 3.07 16 29 H 0.02 1.14 8.02 -2.39 -0.02 1.12 16 30 H 0.06 2.97 5.41 -2.39 -0.01 2.96 16 31 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.43 13.40 8.30 -92.71 -0.77 12.63 16 33 H 0.17 6.31 6.22 -2.91 -0.02 6.29 16 34 H 0.27 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -65.46 306.34 5.29 -60.18 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.38 Total: 20.59 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 6.30 Total: 27.25 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -4.13 Total: -112.66 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: 0.71 Total: -40.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.46 5.29 -60.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347667459.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.057 kcal (2) G-P(sol) polarization free energy of solvation -65.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds