Wall clock time and date at job start Tue Mar 31 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34232 * 116.99922 * 2 1 4 4 O 1.20827 * 119.99840 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00090 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47325 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47259 * 179.97438 * 6 5 3 8 8 C 1.36787 * 120.00218 * 274.41188 * 7 6 5 9 9 H 1.07997 * 119.99645 * 131.07810 * 8 7 6 10 10 C 1.39102 * 120.00064 * 311.08031 * 8 7 6 11 11 N 1.31324 * 119.99690 * 3.58833 * 10 8 7 12 12 Si 1.86793 * 119.99973 * 183.58834 * 10 8 7 13 13 H 1.48502 * 109.47106 * 89.99980 * 12 10 8 14 14 H 1.48499 * 109.47375 * 209.99963 * 12 10 8 15 15 H 1.48503 * 109.47175 * 329.99659 * 12 10 8 16 16 C 1.34779 * 119.99627 * 94.41214 * 7 6 5 17 17 O 1.21572 * 120.00199 * 4.17164 * 16 7 6 18 18 C 1.47992 * 119.99840 * 184.17369 * 16 7 6 19 19 C 1.39813 * 120.19001 * 174.01297 * 18 16 7 20 20 C 1.38776 * 117.89269 * 180.23885 * 19 18 16 21 21 C 1.38607 * 118.07647 * 359.46564 * 20 19 18 22 22 N 1.32159 * 120.08505 * 0.25965 * 21 20 19 23 23 N 1.28353 * 122.31065 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46580 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46564 * 299.99727 * 1 2 3 26 26 H 1.09000 * 109.46963 * 59.99822 * 1 2 3 27 27 H 1.09008 * 109.46623 * 60.00423 * 5 3 2 28 28 H 1.08995 * 109.47341 * 300.00647 * 5 3 2 29 29 H 1.09006 * 109.46600 * 60.00199 * 6 5 3 30 30 H 1.08999 * 109.46915 * 300.00624 * 6 5 3 31 31 H 0.97005 * 119.99348 * 180.02562 * 11 10 8 32 32 H 1.08005 * 121.05457 * 0.02562 * 19 18 16 33 33 H 1.07998 * 120.96382 * 179.74812 * 20 19 18 34 34 H 1.08003 * 119.96136 * 180.27464 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0002 2.7422 -0.0002 7 7 5.4631 2.8189 0.0010 8 6 6.1499 2.7646 1.1827 9 1 6.9884 2.0923 1.2895 10 6 5.7684 3.5752 2.2468 11 7 4.7065 4.3406 2.1412 12 14 6.7663 3.5748 3.8258 13 1 7.8274 4.6104 3.7410 14 1 5.8745 3.8729 4.9751 15 1 7.3905 2.2409 4.0166 16 6 6.1323 2.9429 -1.1623 17 8 5.5203 3.0674 -2.2054 18 6 7.6121 2.9275 -1.1700 19 6 8.3090 2.9299 -2.3821 20 6 9.6958 2.9099 -2.3337 21 6 10.3050 2.9002 -1.0887 22 7 9.5691 2.9048 0.0090 23 7 8.2861 2.9176 -0.0252 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.9564 0.7807 -0.8893 28 1 3.9558 0.7809 0.8907 29 1 3.6100 3.2368 0.8894 30 1 3.6107 3.2357 -0.8906 31 1 4.4407 4.9062 2.8832 32 1 7.7847 2.9433 -3.3262 33 1 10.2834 2.9066 -3.2398 34 1 11.3825 2.8891 -1.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352062115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:26 Heat of formation + Delta-G solvation = -42.285094 kcal Electronic energy + Delta-G solvation = -21639.934058 eV Core-core repulsion = 18153.797181 eV Total energy + Delta-G solvation = -3486.136877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46066 -40.02340 -38.36268 -36.18170 -35.11316 -32.62903 -32.23507 -31.89280 -30.44425 -27.54106 -25.23870 -24.98848 -23.96541 -22.86686 -20.42989 -19.59093 -18.06710 -17.32863 -16.80337 -16.31649 -16.18338 -16.13928 -15.63759 -14.75172 -14.53094 -14.35514 -13.85928 -13.53480 -13.43467 -13.05151 -12.82570 -12.50154 -12.18091 -12.04674 -11.71956 -11.33541 -11.08151 -11.01948 -10.53812 -10.38232 -10.25689 -10.05338 -10.00176 -9.79320 -9.42401 -9.35324 -8.95103 -8.63851 -7.54348 -6.32705 -4.15446 1.10818 1.27900 2.67499 3.04054 3.22596 3.30139 3.34349 3.58649 4.09293 4.34724 4.45011 4.67626 4.94461 5.05139 5.10593 5.20867 5.25409 5.31354 5.37333 5.47674 5.63850 5.76680 5.85716 5.95346 6.19864 6.26687 6.40642 6.59928 6.73417 6.87428 7.34616 7.65631 7.84392 8.18933 8.42532 8.99940 9.20053 9.34370 9.72084 10.63965 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.006319 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.630030 B = 4430.051077 C = 5744.937279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.467 3.533 4 O -0.504 6.504 5 C -0.121 4.121 6 C 0.110 3.890 7 N -0.404 5.404 8 C -0.313 4.313 9 H 0.114 0.886 10 C 0.048 3.952 11 N -0.865 5.865 12 Si 0.928 3.072 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.265 1.265 16 C 0.510 3.490 17 O -0.598 6.598 18 C 0.052 3.948 19 C -0.080 4.080 20 C -0.139 4.139 21 C 0.028 3.972 22 N -0.261 5.261 23 N -0.166 5.166 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.273 0.727 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -6.576 -4.154 8.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.390 6.390 5 C -0.160 4.160 6 C -0.014 4.014 7 N -0.119 5.119 8 C -0.442 4.442 9 H 0.132 0.868 10 C -0.158 4.158 11 N -0.501 5.501 12 Si 0.755 3.245 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.190 1.190 16 C 0.298 3.702 17 O -0.483 6.483 18 C -0.093 4.093 19 C -0.111 4.111 20 C -0.168 4.168 21 C -0.136 4.136 22 N -0.104 5.104 23 N -0.012 5.012 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.530 -6.076 -2.861 6.888 hybrid contribution 0.420 0.173 -0.837 0.952 sum 1.950 -5.903 -3.698 7.234 Atomic orbital electron populations 1.23168 0.77348 1.03011 1.02358 1.86538 1.22758 1.34415 1.84698 1.24005 0.92311 0.80891 0.71790 1.90654 1.67233 1.36202 1.44941 1.21828 0.85980 1.03013 1.05179 1.21630 0.81725 0.91415 1.06593 1.43368 1.04879 1.58438 1.05210 1.19971 1.13437 1.22336 0.88482 0.86850 1.25627 0.95726 0.94169 1.00314 1.69602 1.22989 1.24541 1.33006 0.85896 0.79339 0.79529 0.79771 1.19890 1.21308 1.18968 1.17934 0.84689 0.82506 0.85071 1.90650 1.68058 1.57052 1.32568 1.23068 0.97539 0.97840 0.90853 1.22385 0.94267 0.94335 1.00073 1.22238 0.95016 0.99913 0.99610 1.24305 1.02125 0.96673 0.90459 1.73355 1.01413 1.08531 1.27060 1.74441 0.99093 1.04896 1.22754 0.88646 0.92106 0.92200 0.88876 0.87392 0.84830 0.91290 0.91651 0.83030 0.83817 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.95 10.57 -39.26 -0.41 -6.36 16 3 C 0.47 8.92 7.96 36.00 0.29 9.20 16 4 O -0.50 -10.91 15.73 -18.75 -0.29 -11.20 16 5 C -0.12 -2.39 6.11 -27.88 -0.17 -2.56 16 6 C 0.11 2.61 4.42 -4.04 -0.02 2.59 16 7 N -0.40 -10.05 2.49 -115.84 -0.29 -10.34 16 8 C -0.31 -7.87 7.38 -15.02 -0.11 -7.99 16 9 H 0.11 2.85 6.10 -52.49 -0.32 2.53 16 10 C 0.05 1.22 5.40 -17.45 -0.09 1.13 16 11 N -0.86 -22.93 10.93 55.50 0.61 -22.32 16 12 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 C 0.51 12.46 7.62 -12.26 -0.09 12.37 16 17 O -0.60 -15.27 15.91 5.30 0.08 -15.19 16 18 C 0.05 1.12 6.73 -82.84 -0.56 0.57 16 19 C -0.08 -1.37 9.73 -38.79 -0.38 -1.75 16 20 C -0.14 -1.86 10.20 -39.25 -0.40 -2.26 16 21 C 0.03 0.41 11.31 -17.27 -0.20 0.22 16 22 N -0.26 -5.07 11.51 30.59 0.35 -4.72 16 23 N -0.17 -3.68 7.64 33.31 0.25 -3.43 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 28 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 29 H 0.13 3.48 5.35 -51.93 -0.28 3.20 16 30 H 0.07 1.74 7.20 -51.93 -0.37 1.37 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.15 2.38 7.73 -52.48 -0.41 1.97 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 304.56 15.07 4.59 4.59 Total: -1.00 -31.48 304.56 -4.27 -35.75 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.47 Total: 4.77 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -0.66 Total: 13.02 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.92 Total: -40.81 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.63 Total: -32.75 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.48 -4.27 -35.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352062115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.539 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds