Wall clock time and date at job start Tue Mar 31 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35475 * 117.00003 * 2 1 4 4 N 1.32427 * 119.11472 * 359.97438 * 3 2 1 5 5 C 1.32130 * 120.97455 * 180.02562 * 4 3 2 6 6 C 1.38801 * 119.22180 * 359.97438 * 5 4 3 7 7 C 1.39468 * 118.38654 * 0.02562 * 6 5 4 8 8 C 1.48459 * 120.51285 * 180.02562 * 7 6 5 9 9 O 1.21477 * 120.00154 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99860 * 180.02562 * 8 7 6 11 11 C 1.47571 * 134.49423 * 180.02562 * 10 8 7 12 12 C 1.53946 * 86.11996 * 155.35733 * 11 10 8 13 13 O 1.42904 * 113.73883 * 269.15369 * 12 11 10 14 14 C 1.50701 * 113.74318 * 137.95533 * 12 11 10 15 15 H 1.08002 * 119.99761 * 1.91855 * 14 12 11 16 16 C 1.37871 * 119.99694 * 182.20418 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.47807 * 134.45550 * 359.86596 * 10 8 7 23 23 N 1.32074 * 119.11395 * 180.29663 * 3 2 1 24 24 H 1.08993 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47443 * 300.00698 * 1 2 3 26 26 H 1.09007 * 109.47245 * 60.00282 * 1 2 3 27 27 H 1.07997 * 120.38408 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.80641 * 179.97438 * 6 5 4 29 29 H 1.09004 * 113.77444 * 41.05348 * 11 10 8 30 30 H 1.09004 * 113.87147 * 269.67091 * 11 10 8 31 31 H 0.96703 * 113.99734 * 178.06891 * 13 12 11 32 32 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 33 33 H 1.08997 * 113.77160 * 90.37973 * 22 10 8 34 34 H 1.09008 * 113.84085 * 318.92046 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8670 3.5026 -0.0010 6 6 3.2515 3.6014 -0.0005 7 6 4.0002 2.4247 0.0000 8 6 5.4840 2.4753 0.0012 9 8 6.0551 3.5475 0.0021 10 7 6.1973 1.3318 0.0012 11 6 7.6378 1.0113 0.0026 12 6 7.2323 -0.3292 0.6416 13 8 7.2163 -0.3041 2.0703 14 6 7.9737 -1.5165 0.0832 15 1 8.7329 -1.3728 -0.6714 16 6 7.6787 -2.7865 0.5314 17 7 6.7541 -2.9614 1.4502 18 14 8.5922 -4.2589 -0.1664 19 1 9.5751 -3.7970 -1.1792 20 1 9.3043 -4.9644 0.9293 21 1 7.6233 -5.1858 -0.8044 22 6 5.8500 -0.1049 0.0027 23 7 3.3639 1.2558 -0.0060 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.2557 4.3929 -0.0010 28 1 3.7372 4.5660 -0.0013 29 1 8.2293 1.6497 0.6589 30 1 8.0683 0.9107 -0.9938 31 1 6.9336 -1.1355 2.4752 32 1 6.5463 -3.8549 1.7652 33 1 5.7519 -0.5343 -0.9944 34 1 5.0167 -0.3561 0.6590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352740868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:33 Heat of formation + Delta-G solvation = -41.572332 kcal Electronic energy + Delta-G solvation = -21706.147304 eV Core-core repulsion = 18220.041335 eV Total energy + Delta-G solvation = -3486.105970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50303 -41.11590 -39.56401 -38.86829 -35.89495 -35.08022 -34.14713 -32.62204 -30.59551 -28.52263 -27.58998 -27.01069 -26.00745 -24.74734 -22.22812 -20.76694 -19.54421 -19.40645 -18.88381 -17.77186 -17.57311 -17.34583 -16.90097 -16.54601 -16.39659 -15.91976 -15.62298 -15.19433 -14.99351 -14.75660 -14.37593 -14.10753 -13.79403 -13.41985 -12.98538 -12.83389 -12.78266 -12.39892 -12.34049 -12.23780 -12.17667 -12.04333 -11.73563 -11.15563 -10.67967 -10.56245 -10.23033 -10.10742 -9.65722 -8.25083 -6.42486 -0.68152 -0.09278 1.39925 1.46288 1.49837 1.58073 1.61014 1.75694 2.41434 2.66213 2.80497 2.96598 3.12392 3.48614 3.71613 3.81429 4.11313 4.19543 4.36324 4.39340 4.39409 4.54098 4.59169 4.68946 4.79878 4.88431 4.96459 5.07752 5.23238 5.48003 5.73577 5.92253 6.00889 6.59851 6.63513 6.73990 6.96995 7.30280 7.41842 8.81637 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005540 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.922326 B = 5052.903927 C = 6197.897691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.311 6.311 3 C 0.484 3.516 4 N -0.551 5.551 5 C 0.205 3.795 6 C -0.203 4.203 7 C 0.154 3.846 8 C 0.572 3.428 9 O -0.567 6.567 10 N -0.612 5.612 11 C 0.115 3.885 12 C 0.215 3.785 13 O -0.586 6.586 14 C -0.555 4.555 15 H 0.076 0.924 16 C 0.031 3.969 17 N -0.917 5.917 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.116 3.884 23 N -0.527 5.527 24 H 0.126 0.874 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.238 0.762 28 H 0.182 0.818 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.387 0.613 32 H 0.275 0.725 33 H 0.080 0.920 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 7.655 -3.810 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.213 6.213 3 C 0.181 3.819 4 N -0.281 5.281 5 C 0.038 3.962 6 C -0.226 4.226 7 C 0.008 3.992 8 C 0.360 3.640 9 O -0.447 6.447 10 N -0.343 5.343 11 C -0.006 4.006 12 C 0.173 3.827 13 O -0.397 6.397 14 C -0.593 4.593 15 H 0.094 0.906 16 C -0.170 4.170 17 N -0.557 5.557 18 Si 0.796 3.204 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.205 1.205 22 C -0.007 4.007 23 N -0.256 5.256 24 H 0.144 0.856 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.254 0.746 28 H 0.199 0.801 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.241 0.759 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.918 7.591 -3.802 15.458 hybrid contribution 0.444 -0.719 -0.025 0.845 sum -12.474 6.873 -3.826 14.747 Atomic orbital electron populations 1.23305 0.73335 1.05455 1.03342 1.86142 1.25733 1.22532 1.86869 1.20794 0.85511 0.85855 0.89761 1.68135 1.40991 0.99522 1.19454 1.23971 0.91587 0.95229 0.85386 1.23074 0.96435 1.00181 1.02938 1.21367 0.93806 0.89311 0.94725 1.17849 0.85661 0.82895 0.77624 1.90699 1.71124 1.28875 1.54037 1.50189 1.09901 1.06697 1.67475 1.23587 0.81132 0.94677 1.01213 1.20210 0.91079 0.91831 0.79531 1.86024 1.90855 1.42369 1.20456 1.21737 1.22365 0.91257 1.23913 0.90593 1.25798 0.94887 1.01755 0.94563 1.69502 1.31849 1.24276 1.30089 0.85308 0.78442 0.78360 0.78307 1.18869 1.20615 1.20482 1.24017 1.00942 0.75116 1.00621 1.67525 1.09374 1.30229 1.18467 0.85553 0.91289 0.91025 0.74561 0.80098 0.91036 0.87100 0.75920 0.91562 0.90195 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.36 113.37 1.17 1.94 16 2 O -0.31 -9.73 10.56 -87.74 -0.93 -10.66 16 3 C 0.48 15.84 8.48 180.61 1.53 17.37 16 4 N -0.55 -13.83 9.20 -313.45 -2.88 -16.71 16 5 C 0.21 3.91 11.30 84.78 0.96 4.87 16 6 C -0.20 -5.15 9.71 22.70 0.22 -4.93 16 7 C 0.15 5.57 6.79 41.98 0.28 5.86 16 8 C 0.57 24.33 8.06 86.97 0.70 25.03 16 9 O -0.57 -25.15 17.15 -3.64 -0.06 -25.21 16 10 N -0.61 -27.59 3.61 -842.42 -3.04 -30.64 16 11 C 0.12 5.12 8.23 86.49 0.71 5.83 16 12 C 0.21 10.74 1.40 -10.89 -0.02 10.72 16 13 O -0.59 -31.62 13.48 -148.98 -2.01 -33.63 16 14 C -0.55 -28.37 8.61 25.60 0.22 -28.15 16 15 H 0.08 3.72 7.81 -2.91 -0.02 3.70 16 16 C 0.03 1.55 5.40 84.65 0.46 2.01 16 17 N -0.92 -48.14 11.21 21.45 0.24 -47.90 16 18 Si 0.97 40.29 29.54 68.60 2.03 42.32 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.12 5.49 7.04 86.43 0.61 6.10 16 23 N -0.53 -20.27 8.12 -302.70 -2.46 -22.73 16 24 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 27 H 0.24 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.18 3.84 7.73 -2.91 -0.02 3.82 16 29 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.11 4.40 8.09 -2.39 -0.02 4.38 16 31 H 0.39 21.28 6.61 -74.06 -0.49 20.79 16 32 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 33 H 0.08 3.74 8.09 -2.39 -0.02 3.72 16 34 H 0.06 3.33 7.23 -2.38 -0.02 3.31 16 Total: -1.00 -66.95 303.97 -1.61 -68.56 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.66 Total: 29.95 kcal Atomic # 6 Polarization: 39.80 SS G_CDS: 6.85 Total: 46.65 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -8.15 Total: -117.98 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -3.00 Total: -69.50 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -66.95 -1.61 -68.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352740868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.983 kcal (2) G-P(sol) polarization free energy of solvation -66.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds