Wall clock time and date at job start Tue Mar 31 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35433 * 119.46569 * 2 1 4 4 C 1.35760 * 121.22401 * 180.02562 * 3 2 1 5 5 C 1.39473 * 120.13676 * 359.97438 * 4 3 2 6 6 C 1.39337 * 118.95575 * 0.02562 * 5 4 3 7 7 C 1.47080 * 120.58588 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00118 * 5.79372 * 7 6 5 9 9 N 1.34782 * 119.99821 * 185.79256 * 7 6 5 10 10 C 1.46500 * 119.99420 * 174.90684 * 9 7 6 11 11 C 1.50705 * 109.46740 * 180.27718 * 10 9 7 12 12 O 1.21291 * 120.00128 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99934 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99668 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00462 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99714 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99644 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46920 * 59.99454 * 18 16 14 20 20 H 1.48500 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46897 * 299.99870 * 18 16 14 22 22 C 1.34654 * 119.46979 * 180.26566 * 2 1 3 23 23 O 1.21879 * 120.10731 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47214 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46883 * 120.00511 * 1 2 3 26 26 H 1.09003 * 109.46981 * 239.99953 * 1 2 3 27 27 H 1.07992 * 119.38814 * 359.97350 * 3 2 1 28 28 H 1.08002 * 119.93167 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.52260 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99911 * 355.18303 * 9 7 6 31 31 H 1.09000 * 109.47401 * 300.27394 * 10 9 7 32 32 H 1.08998 * 109.47567 * 60.27963 * 10 9 7 33 33 H 0.97001 * 120.00016 * 359.97438 * 13 11 10 34 34 H 0.97004 * 119.99268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1312 1.1791 0.0000 4 6 3.4882 1.2208 -0.0005 5 6 4.2251 0.0367 -0.0005 6 6 3.5464 -1.1803 -0.0005 7 6 4.2877 -2.4506 -0.0011 8 8 5.4996 -2.4477 0.1048 9 7 3.6243 -3.6179 -0.1189 10 6 4.3682 -4.8749 -0.2318 11 6 3.3993 -6.0224 -0.3576 12 8 2.2049 -5.8109 -0.3529 13 7 3.8599 -7.2836 -0.4742 14 6 2.9784 -8.3273 -0.5892 15 1 1.9150 -8.1390 -0.5858 16 6 3.4533 -9.6276 -0.7100 17 7 4.7473 -9.8567 -0.7146 18 14 2.2524 -11.0499 -0.8659 19 1 1.4146 -10.8598 -2.0772 20 1 3.0064 -12.3241 -0.9809 21 1 1.3814 -11.0963 0.3360 22 6 2.1275 -1.1723 -0.0054 23 8 1.5103 -2.2233 -0.0108 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8900 27 1 1.5727 2.1034 -0.0004 28 1 3.9981 2.1729 -0.0009 29 1 5.3048 0.0625 -0.0005 30 1 2.6544 -3.6252 -0.1330 31 1 5.0075 -4.8409 -1.1140 32 1 4.9830 -5.0144 0.6573 33 1 4.8150 -7.4527 -0.4776 34 1 5.0788 -10.7644 -0.7993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436173298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:05 Heat of formation + Delta-G solvation = -63.847561 kcal Electronic energy + Delta-G solvation = -20963.973907 eV Core-core repulsion = 17476.902011 eV Total energy + Delta-G solvation = -3487.071896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66182 -39.15518 -37.90494 -37.31264 -34.67243 -34.21183 -33.39510 -31.24259 -30.44880 -28.00433 -27.68469 -25.05769 -23.88157 -22.87485 -20.61838 -19.42217 -18.18550 -17.87158 -17.59388 -17.09761 -16.41485 -15.92533 -15.35121 -14.99807 -14.98603 -14.71449 -14.39033 -13.94193 -13.74729 -13.43457 -13.20570 -13.07155 -12.73374 -12.41429 -12.15146 -11.99631 -11.77016 -11.52482 -11.01371 -10.42033 -10.27892 -10.20356 -10.12476 -9.72203 -9.50144 -8.56293 -8.44248 -8.21705 -7.96457 -6.39724 -3.80932 0.23732 1.58766 2.23652 2.84459 3.22358 3.28057 3.32394 3.62837 3.77155 3.91011 4.12206 4.21967 4.23181 4.68632 4.73269 4.92666 4.93719 5.02115 5.12692 5.27920 5.28615 5.54770 5.69289 5.90575 6.08706 6.13307 6.14542 6.24903 6.64465 6.98291 7.57221 7.69582 8.04855 8.21738 8.60610 8.77613 9.17484 9.53406 10.03281 10.77622 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.003576 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.707044 B = 7828.196605 C = 8644.841581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.495 5.495 3 C 0.155 3.845 4 C -0.242 4.242 5 C 0.053 3.947 6 C -0.264 4.264 7 C 0.570 3.430 8 O -0.562 6.562 9 N -0.694 5.694 10 C 0.106 3.894 11 C 0.431 3.569 12 O -0.587 6.587 13 N -0.554 5.554 14 C -0.302 4.302 15 H 0.104 0.896 16 C 0.024 3.976 17 N -0.898 5.898 18 Si 0.933 3.067 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.521 3.479 23 O -0.519 6.519 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.426 0.574 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.395 0.605 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 24.776 1.139 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.204 5.204 3 C 0.025 3.975 4 C -0.265 4.265 5 C 0.030 3.970 6 C -0.272 4.272 7 C 0.357 3.643 8 O -0.444 6.444 9 N -0.356 5.356 10 C -0.022 4.022 11 C 0.216 3.784 12 O -0.472 6.472 13 N -0.190 5.190 14 C -0.432 4.432 15 H 0.122 0.878 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.760 3.240 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.322 3.678 23 O -0.399 6.399 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.276 0.724 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.354 23.941 1.178 24.362 hybrid contribution -0.312 -0.728 -0.101 0.799 sum -4.666 23.213 1.078 23.701 Atomic orbital electron populations 1.22255 0.76482 1.04024 1.05381 1.45418 1.09675 1.06702 1.58589 1.22234 0.94252 0.89351 0.91641 1.20669 0.92317 0.99682 1.13879 1.22006 1.01694 0.90205 0.83078 1.21073 0.92132 0.95734 1.18223 1.17381 0.86589 0.83125 0.77230 1.90754 1.13406 1.87674 1.52537 1.46321 1.13832 1.04355 1.71124 1.20966 0.94443 0.83945 1.02856 1.19814 0.89230 0.84191 0.85167 1.90536 1.16146 1.83958 1.56602 1.41775 1.09874 1.04437 1.62901 1.19689 0.91550 0.84622 1.47307 0.87820 1.25297 0.96603 0.98815 0.97119 1.69619 1.12157 1.22406 1.49723 0.85881 0.79602 0.79405 0.79102 1.19861 1.20932 1.19849 1.17153 0.88379 0.82993 0.79299 1.90790 1.68711 1.28634 1.51775 0.89187 0.89511 0.89546 0.81565 0.82918 0.83223 0.72418 0.89993 0.89874 0.77104 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.04 59.85 0.60 0.98 16 2 N -0.49 -4.57 2.98 -126.76 -0.38 -4.94 16 3 C 0.16 0.85 10.28 -16.85 -0.17 0.68 16 4 C -0.24 -1.52 9.99 -40.01 -0.40 -1.92 16 5 C 0.05 0.56 9.70 -38.71 -0.38 0.18 16 6 C -0.26 -3.96 5.92 -104.50 -0.62 -4.58 16 7 C 0.57 10.94 7.74 -12.67 -0.10 10.84 16 8 O -0.56 -11.58 16.41 5.23 0.09 -11.49 16 9 N -0.69 -14.74 5.44 -62.67 -0.34 -15.08 16 10 C 0.11 2.28 6.16 -5.19 -0.03 2.25 16 11 C 0.43 11.09 7.85 -10.98 -0.09 11.01 16 12 O -0.59 -17.02 15.24 5.55 0.08 -16.94 16 13 N -0.55 -14.84 5.29 -10.96 -0.06 -14.89 16 14 C -0.30 -8.73 9.68 -14.93 -0.14 -8.87 16 15 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 16 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 17 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 18 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.52 7.64 7.44 -14.91 -0.11 7.53 16 23 O -0.52 -9.78 13.70 5.03 0.07 -9.71 16 24 H 0.09 0.18 7.70 -51.93 -0.40 -0.22 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.17 0.10 7.79 -52.49 -0.41 -0.30 16 28 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 29 H 0.15 1.46 7.71 -52.49 -0.40 1.06 16 30 H 0.43 9.70 4.04 -40.82 -0.16 9.54 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.40 10.10 7.90 -40.82 -0.32 9.78 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -37.86 304.48 -5.11 -42.96 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -3.32 Total: 14.69 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -1.53 Total: 18.66 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.05 Total: -59.26 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: 0.24 Total: -38.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.86 -5.11 -42.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.883 kcal (2) G-P(sol) polarization free energy of solvation -37.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds