Wall clock time and date at job start Tue Mar 31 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35433 * 119.46569 * 2 1 4 4 C 1.35760 * 121.22401 * 180.02562 * 3 2 1 5 5 C 1.39473 * 120.13676 * 359.97438 * 4 3 2 6 6 C 1.39337 * 118.95575 * 0.02562 * 5 4 3 7 7 C 1.47080 * 120.58588 * 179.97438 * 6 5 4 8 8 O 1.21650 * 120.00118 * 5.79372 * 7 6 5 9 9 N 1.34782 * 119.99821 * 185.79256 * 7 6 5 10 10 C 1.46500 * 119.99420 * 174.90684 * 9 7 6 11 11 C 1.50705 * 109.46740 * 180.27718 * 10 9 7 12 12 O 1.21291 * 120.00128 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99934 * 180.02562 * 11 10 9 14 14 C 1.37101 * 119.99668 * 180.02562 * 13 11 10 15 15 H 1.07999 * 120.00462 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99714 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99644 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00081 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46920 * 59.99454 * 18 16 14 20 20 H 1.48500 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46897 * 299.99870 * 18 16 14 22 22 C 1.34654 * 119.46979 * 180.26566 * 2 1 3 23 23 O 1.21879 * 120.10731 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47214 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46883 * 120.00511 * 1 2 3 26 26 H 1.09003 * 109.46981 * 239.99953 * 1 2 3 27 27 H 1.07992 * 119.38814 * 359.97350 * 3 2 1 28 28 H 1.08002 * 119.93167 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.52260 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99911 * 355.18303 * 9 7 6 31 31 H 1.09000 * 109.47401 * 300.27394 * 10 9 7 32 32 H 1.08998 * 109.47567 * 60.27963 * 10 9 7 33 33 H 0.97001 * 120.00016 * 359.97438 * 13 11 10 34 34 H 0.97004 * 119.99268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1312 1.1791 0.0000 4 6 3.4882 1.2208 -0.0005 5 6 4.2251 0.0367 -0.0005 6 6 3.5464 -1.1803 -0.0005 7 6 4.2877 -2.4506 -0.0011 8 8 5.4996 -2.4477 0.1048 9 7 3.6243 -3.6179 -0.1189 10 6 4.3682 -4.8749 -0.2318 11 6 3.3993 -6.0224 -0.3576 12 8 2.2049 -5.8109 -0.3529 13 7 3.8599 -7.2836 -0.4742 14 6 2.9784 -8.3273 -0.5892 15 1 1.9150 -8.1390 -0.5858 16 6 3.4533 -9.6276 -0.7100 17 7 4.7473 -9.8567 -0.7146 18 14 2.2524 -11.0499 -0.8659 19 1 1.4146 -10.8598 -2.0772 20 1 3.0064 -12.3241 -0.9809 21 1 1.3814 -11.0963 0.3360 22 6 2.1275 -1.1723 -0.0054 23 8 1.5103 -2.2233 -0.0108 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5139 0.8900 27 1 1.5727 2.1034 -0.0004 28 1 3.9981 2.1729 -0.0009 29 1 5.3048 0.0625 -0.0005 30 1 2.6544 -3.6252 -0.1330 31 1 5.0075 -4.8409 -1.1140 32 1 4.9830 -5.0144 0.6573 33 1 4.8150 -7.4527 -0.4776 34 1 5.0788 -10.7644 -0.7993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436173298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:04 Heat of formation + Delta-G solvation = -95.147162 kcal Electronic energy + Delta-G solvation = -20965.331160 eV Core-core repulsion = 17476.902011 eV Total energy + Delta-G solvation = -3488.429149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55154 -40.75410 -39.77113 -38.30260 -36.24622 -35.46746 -35.16029 -33.40478 -31.35089 -29.34753 -28.62505 -26.75171 -25.21351 -23.69029 -21.94775 -21.39023 -20.12701 -19.28336 -18.50740 -18.01197 -17.48350 -17.29621 -16.75671 -16.63131 -16.58504 -16.26131 -15.73898 -15.41100 -15.38267 -15.01185 -14.23451 -14.04570 -13.62227 -13.58131 -13.57230 -13.43214 -13.05236 -12.92926 -12.83078 -12.50420 -12.13996 -11.60161 -11.32108 -11.09783 -11.05146 -10.58908 -10.17922 -10.08987 -9.09947 -8.53290 -6.04253 -0.54457 0.79048 1.35786 1.39435 1.50590 1.52237 1.69097 1.87416 2.15192 2.36421 2.71002 3.10660 3.12550 3.51660 3.78536 3.90431 4.00845 4.15561 4.23961 4.33741 4.35633 4.37672 4.40677 4.80560 4.88214 4.96870 5.23681 5.32812 5.38161 5.54632 5.88757 5.90166 6.45141 6.56420 6.88010 7.00503 7.24103 7.40626 7.92458 8.63793 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033179 B = 0.003576 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.707044 B = 7828.196605 C = 8644.841581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.490 5.490 3 C 0.190 3.810 4 C -0.243 4.243 5 C 0.081 3.919 6 C -0.332 4.332 7 C 0.566 3.434 8 O -0.590 6.590 9 N -0.711 5.711 10 C 0.117 3.883 11 C 0.428 3.572 12 O -0.624 6.624 13 N -0.557 5.557 14 C -0.343 4.343 15 H 0.082 0.918 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 1.001 2.999 19 H -0.270 1.270 20 H -0.266 1.266 21 H -0.270 1.270 22 C 0.509 3.491 23 O -0.582 6.582 24 H 0.151 0.849 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.237 0.763 28 H 0.203 0.797 29 H 0.153 0.847 30 H 0.419 0.581 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.399 0.601 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 28.153 1.082 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.195 5.195 3 C 0.060 3.940 4 C -0.264 4.264 5 C 0.057 3.943 6 C -0.339 4.339 7 C 0.357 3.643 8 O -0.474 6.474 9 N -0.374 5.374 10 C -0.011 4.011 11 C 0.215 3.785 12 O -0.511 6.511 13 N -0.192 5.192 14 C -0.472 4.472 15 H 0.100 0.900 16 C -0.211 4.211 17 N -0.555 5.555 18 Si 0.823 3.177 19 H -0.195 1.195 20 H -0.191 1.191 21 H -0.195 1.195 22 C 0.313 3.687 23 O -0.468 6.468 24 H 0.169 0.831 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.254 0.746 28 H 0.219 0.781 29 H 0.170 0.830 30 H 0.268 0.732 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.926 27.377 1.123 27.840 hybrid contribution -0.128 -1.498 -0.075 1.505 sum -5.054 25.880 1.048 26.389 Atomic orbital electron populations 1.22550 0.74563 1.07477 1.04084 1.45517 1.11046 1.06435 1.56538 1.23464 0.94668 0.89789 0.86109 1.21247 0.92731 0.99634 1.12785 1.22338 1.02242 0.90177 0.79525 1.20722 0.92598 0.94993 1.25577 1.18074 0.86623 0.83930 0.75716 1.90699 1.14400 1.88241 1.54095 1.46519 1.13548 1.04797 1.72519 1.20814 0.93423 0.83053 1.03813 1.20469 0.89402 0.84802 0.83808 1.90501 1.18046 1.84612 1.57965 1.41802 1.09849 1.04606 1.62990 1.19724 0.91114 0.86117 1.50216 0.89952 1.26185 0.98571 1.00686 0.95612 1.69686 1.13463 1.23563 1.48820 0.84883 0.77442 0.76258 0.79076 1.19474 1.19065 1.19515 1.17209 0.88432 0.83873 0.79231 1.90730 1.69656 1.31078 1.55303 0.83135 0.91029 0.90938 0.74636 0.78051 0.82955 0.73240 0.88725 0.88911 0.76621 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.04 127.77 1.28 1.82 16 2 N -0.49 -7.75 2.98 -673.18 -2.00 -9.75 16 3 C 0.19 0.92 10.28 83.56 0.86 1.78 16 4 C -0.24 -1.74 9.99 21.99 0.22 -1.52 16 5 C 0.08 1.55 9.70 22.83 0.22 1.77 16 6 C -0.33 -10.23 5.92 -19.79 -0.12 -10.34 16 7 C 0.57 23.11 7.74 86.56 0.67 23.78 16 8 O -0.59 -25.48 16.41 -4.19 -0.07 -25.55 16 9 N -0.71 -32.54 5.44 -470.42 -2.56 -35.09 16 10 C 0.12 5.36 6.16 85.63 0.53 5.89 16 11 C 0.43 23.42 7.85 87.66 0.69 24.11 16 12 O -0.62 -38.59 15.24 -3.06 -0.05 -38.63 16 13 N -0.56 -31.24 5.29 -306.97 -1.62 -32.87 16 14 C -0.34 -20.56 9.68 84.04 0.81 -19.74 16 15 H 0.08 5.21 7.16 -2.91 -0.02 5.19 16 16 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 17 N -0.92 -51.26 13.05 21.67 0.28 -50.98 16 18 Si 1.00 44.24 29.55 68.60 2.03 46.26 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 C 0.51 15.34 7.44 85.17 0.63 15.97 16 23 O -0.58 -23.77 13.70 -4.92 -0.07 -23.84 16 24 H 0.15 -0.33 7.70 -2.39 -0.02 -0.35 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.24 -2.01 7.79 -2.91 -0.02 -2.04 16 28 H 0.20 -0.39 8.06 -2.91 -0.02 -0.41 16 29 H 0.15 2.75 7.71 -2.91 -0.02 2.73 16 30 H 0.42 20.79 4.04 -92.77 -0.37 20.41 16 31 H 0.09 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.09 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.40 21.29 7.90 -92.71 -0.73 20.55 16 34 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -91.76 304.48 2.26 -89.50 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.06 Total: 37.52 kcal Atomic # 6 Polarization: 37.17 SS G_CDS: 6.26 Total: 43.43 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -5.90 Total: -128.69 kcal Atomic # 8 Polarization: -87.84 SS G_CDS: -0.18 Total: -88.02 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -91.76 2.26 -89.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436173298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.648 kcal (2) G-P(sol) polarization free energy of solvation -91.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds