Wall clock time and date at job start Tue Mar 31 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35641 * 117.00476 * 2 1 4 4 C 1.39350 * 120.54008 * 359.97438 * 3 2 1 5 5 C 1.38295 * 118.43911 * 180.02562 * 4 3 2 6 6 C 1.38768 * 119.45108 * 0.02562 * 5 4 3 7 7 N 1.31376 * 121.06236 * 359.97438 * 6 5 4 8 8 C 1.32864 * 121.69653 * 0.02562 * 7 6 5 9 9 C 1.47834 * 119.78200 * 179.72267 * 8 7 6 10 10 O 1.21550 * 120.00041 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99795 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99498 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46739 * 180.02562 * 12 11 9 14 14 O 1.21287 * 120.00005 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99945 * 180.02562 * 13 12 11 16 16 C 1.37092 * 120.00162 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00067 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00282 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00217 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99642 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47121 * 90.00183 * 20 18 16 22 22 H 1.48496 * 109.46675 * 209.99998 * 20 18 16 23 23 H 1.48499 * 109.47093 * 330.00149 * 20 18 16 24 24 H 1.08996 * 109.46970 * 60.00012 * 1 2 3 25 25 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46617 * 300.00264 * 1 2 3 27 27 H 1.07997 * 120.77588 * 0.04337 * 4 3 2 28 28 H 1.08005 * 120.27384 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.47129 * 180.02562 * 6 5 4 30 30 H 0.96996 * 120.00387 * 0.02562 * 11 9 8 31 31 H 1.08993 * 109.47661 * 300.00266 * 12 11 9 32 32 H 1.09007 * 109.47329 * 60.00617 * 12 11 9 33 33 H 0.97006 * 119.99500 * 359.97438 * 15 13 12 34 34 H 0.97002 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2971 2.3844 -0.0005 5 6 1.9698 3.5927 -0.0011 6 6 3.3575 3.6011 -0.0016 7 7 4.0421 2.4798 -0.0011 8 6 3.4410 1.2949 -0.0006 9 6 4.2532 0.0596 -0.0062 10 8 3.7074 -1.0265 -0.0053 11 7 5.5987 0.1377 -0.0113 12 6 6.4034 -1.0865 -0.0164 13 6 7.8666 -0.7256 -0.0209 14 8 8.2039 0.4394 -0.0195 15 7 8.8003 -1.6976 -0.0265 16 6 10.1314 -1.3694 -0.0300 17 1 10.4318 -0.3321 -0.0288 18 6 11.0940 -2.3714 -0.0352 19 7 12.3699 -2.0569 -0.0392 20 14 10.5744 -4.1658 -0.0366 21 1 10.4318 -4.6387 -1.4370 22 1 11.6038 -4.9797 0.6583 23 1 9.2745 -4.3052 0.6677 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2176 2.3527 -0.0003 28 1 1.4197 4.5221 -0.0019 29 1 3.8831 4.5445 -0.0016 30 1 6.0342 1.0044 -0.0109 31 1 6.1771 -1.6738 0.8735 32 1 6.1702 -1.6710 -0.9065 33 1 8.5304 -2.6293 -0.0272 34 1 13.0419 -2.7564 -0.0432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539456429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:32 Heat of formation + Delta-G solvation = -60.530587 kcal Electronic energy + Delta-G solvation = -20738.133521 eV Core-core repulsion = 17251.205460 eV Total energy + Delta-G solvation = -3486.928061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07613 -39.19233 -38.38964 -38.04686 -34.44046 -33.68116 -32.59518 -31.73662 -31.06101 -28.15556 -27.55576 -25.00616 -23.82767 -23.05463 -20.58897 -19.60078 -18.85729 -18.33214 -17.73020 -17.25336 -16.23005 -15.83850 -15.48250 -15.24614 -15.05686 -14.75016 -14.56613 -14.19687 -14.04060 -13.64417 -13.34434 -13.05226 -12.78352 -12.40329 -12.11171 -11.99665 -11.80033 -11.77041 -11.18929 -10.59672 -10.22910 -10.11738 -10.01032 -9.65979 -9.63850 -8.85788 -8.69192 -8.60139 -8.24449 -6.35308 -3.87471 0.47439 0.96790 2.81580 2.87647 3.04099 3.08485 3.15740 3.24968 3.62655 3.76987 4.08420 4.12083 4.29067 4.43056 4.61837 4.70868 4.79056 4.80874 4.93479 5.16871 5.19537 5.27191 5.58364 5.65744 5.76631 5.85030 5.88494 6.08281 6.67313 6.92200 7.48615 7.53662 7.92622 8.06699 8.44535 8.53472 8.87827 9.35894 9.70546 10.77066 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003506 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.298195 B = 7984.499470 C = 8812.346329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.110 4.110 6 C 0.059 3.941 7 N -0.414 5.414 8 C 0.050 3.950 9 C 0.569 3.431 10 O -0.526 6.526 11 N -0.690 5.690 12 C 0.106 3.894 13 C 0.440 3.560 14 O -0.574 6.574 15 N -0.578 5.578 16 C -0.308 4.308 17 H 0.122 0.878 18 C 0.044 3.956 19 N -0.876 5.876 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.056 0.944 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.145 0.855 28 H 0.143 0.857 29 H 0.167 0.833 30 H 0.421 0.579 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.374 0.626 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.976 6.627 0.056 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.181 6.181 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.130 4.130 6 C -0.101 4.101 7 N -0.126 5.126 8 C -0.089 4.089 9 C 0.353 3.647 10 O -0.402 6.402 11 N -0.345 5.345 12 C -0.022 4.022 13 C 0.225 3.775 14 O -0.457 6.457 15 N -0.216 5.216 16 C -0.437 4.437 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.516 5.516 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.192 1.192 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.163 0.837 28 H 0.160 0.840 29 H 0.184 0.816 30 H 0.261 0.739 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.207 0.793 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.864 6.306 0.056 24.683 hybrid contribution -1.203 -0.826 0.015 1.460 sum -25.067 5.480 0.071 25.659 Atomic orbital electron populations 1.23215 0.78660 1.04675 1.01113 1.86437 1.20785 1.24509 1.86389 1.20049 0.92278 0.85780 0.93480 1.21731 1.00997 0.91820 1.05860 1.22217 0.95800 0.98385 0.96570 1.22766 0.91308 0.96514 0.99555 1.67703 1.39843 0.97401 1.07620 1.20700 0.88475 0.92932 1.06819 1.17551 0.82088 0.87292 0.77798 1.90811 1.71880 1.27450 1.50073 1.45527 1.05029 1.11173 1.72747 1.21016 0.90275 0.87472 1.03437 1.19642 0.86428 0.86527 0.84872 1.90557 1.81413 1.18579 1.55178 1.42114 1.06836 1.06913 1.65774 1.19451 0.78545 0.97251 1.48454 0.86068 1.25055 0.95008 0.98627 0.97245 1.69617 0.99557 1.33871 1.48508 0.86672 0.78939 0.84797 0.79100 1.19431 1.20050 1.19205 0.92548 0.87638 0.92555 0.83697 0.83960 0.81622 0.73868 0.89557 0.89542 0.79271 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.50 8.56 -40.57 -0.35 -3.85 16 3 C 0.14 1.71 6.71 -38.55 -0.26 1.45 16 4 C -0.18 -1.54 9.13 -39.15 -0.36 -1.90 16 5 C -0.11 -0.84 10.10 -39.36 -0.40 -1.23 16 6 C 0.06 0.59 11.17 -17.55 -0.20 0.40 16 7 N -0.41 -5.81 9.54 -9.71 -0.09 -5.90 16 8 C 0.05 0.76 6.76 -82.88 -0.56 0.20 16 9 C 0.57 10.14 7.80 -12.33 -0.10 10.04 16 10 O -0.53 -10.31 15.14 -16.63 -0.25 -10.56 16 11 N -0.69 -12.68 5.52 -62.43 -0.34 -13.03 16 12 C 0.11 1.97 6.15 -5.19 -0.03 1.93 16 13 C 0.44 10.12 7.85 -10.98 -0.09 10.04 16 14 O -0.57 -15.19 15.24 5.55 0.08 -15.11 16 15 N -0.58 -13.85 5.09 -10.96 -0.06 -13.91 16 16 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 17 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 18 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 19 N -0.88 -25.43 13.96 55.50 0.77 -24.66 16 20 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 24 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 25 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.30 7.70 -51.92 -0.40 -0.10 16 27 H 0.15 0.78 6.46 -52.49 -0.34 0.44 16 28 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 29 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.42 8.03 6.76 -40.82 -0.28 7.75 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -35.27 303.30 -4.93 -40.21 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -3.32 Total: 13.26 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: -1.24 Total: 14.32 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.51 Total: -29.52 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.27 -4.93 -40.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539456429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.323 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds