Wall clock time and date at job start Tue Mar 31 2020 00:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35641 * 117.00476 * 2 1 4 4 C 1.39350 * 120.54008 * 359.97438 * 3 2 1 5 5 C 1.38295 * 118.43911 * 180.02562 * 4 3 2 6 6 C 1.38768 * 119.45108 * 0.02562 * 5 4 3 7 7 N 1.31376 * 121.06236 * 359.97438 * 6 5 4 8 8 C 1.32864 * 121.69653 * 0.02562 * 7 6 5 9 9 C 1.47834 * 119.78200 * 179.72267 * 8 7 6 10 10 O 1.21550 * 120.00041 * 179.97438 * 9 8 7 11 11 N 1.34777 * 119.99795 * 0.02562 * 9 8 7 12 12 C 1.46501 * 119.99498 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46739 * 180.02562 * 12 11 9 14 14 O 1.21287 * 120.00005 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99945 * 180.02562 * 13 12 11 16 16 C 1.37092 * 120.00162 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00067 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00282 * 179.97438 * 16 15 13 19 19 N 1.31403 * 120.00217 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 119.99642 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47121 * 90.00183 * 20 18 16 22 22 H 1.48496 * 109.46675 * 209.99998 * 20 18 16 23 23 H 1.48499 * 109.47093 * 330.00149 * 20 18 16 24 24 H 1.08996 * 109.46970 * 60.00012 * 1 2 3 25 25 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46617 * 300.00264 * 1 2 3 27 27 H 1.07997 * 120.77588 * 0.04337 * 4 3 2 28 28 H 1.08005 * 120.27384 * 179.97438 * 5 4 3 29 29 H 1.07996 * 119.47129 * 180.02562 * 6 5 4 30 30 H 0.96996 * 120.00387 * 0.02562 * 11 9 8 31 31 H 1.08993 * 109.47661 * 300.00266 * 12 11 9 32 32 H 1.09007 * 109.47329 * 60.00617 * 12 11 9 33 33 H 0.97006 * 119.99500 * 359.97438 * 15 13 12 34 34 H 0.97002 * 120.00020 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2971 2.3844 -0.0005 5 6 1.9698 3.5927 -0.0011 6 6 3.3575 3.6011 -0.0016 7 7 4.0421 2.4798 -0.0011 8 6 3.4410 1.2949 -0.0006 9 6 4.2532 0.0596 -0.0062 10 8 3.7074 -1.0265 -0.0053 11 7 5.5987 0.1377 -0.0113 12 6 6.4034 -1.0865 -0.0164 13 6 7.8666 -0.7256 -0.0209 14 8 8.2039 0.4394 -0.0195 15 7 8.8003 -1.6976 -0.0265 16 6 10.1314 -1.3694 -0.0300 17 1 10.4318 -0.3321 -0.0288 18 6 11.0940 -2.3714 -0.0352 19 7 12.3699 -2.0569 -0.0392 20 14 10.5744 -4.1658 -0.0366 21 1 10.4318 -4.6387 -1.4370 22 1 11.6038 -4.9797 0.6583 23 1 9.2745 -4.3052 0.6677 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2176 2.3527 -0.0003 28 1 1.4197 4.5221 -0.0019 29 1 3.8831 4.5445 -0.0016 30 1 6.0342 1.0044 -0.0109 31 1 6.1771 -1.6738 0.8735 32 1 6.1702 -1.6710 -0.9065 33 1 8.5304 -2.6293 -0.0272 34 1 13.0419 -2.7564 -0.0432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539456429.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:32 Heat of formation + Delta-G solvation = -89.329123 kcal Electronic energy + Delta-G solvation = -20739.382319 eV Core-core repulsion = 17251.205460 eV Total energy + Delta-G solvation = -3488.176860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97075 -40.72913 -39.70984 -39.16167 -36.29486 -35.32511 -33.85244 -33.39241 -31.89994 -29.59715 -28.28238 -26.60876 -25.13907 -23.81861 -21.83047 -21.47436 -20.61872 -19.47746 -18.82382 -18.16139 -17.48829 -17.10544 -16.87830 -16.60708 -16.56454 -16.14357 -15.56517 -15.37749 -15.21073 -14.86332 -14.54103 -14.46437 -14.24458 -13.99745 -13.58394 -13.43582 -12.96556 -12.45034 -12.43336 -12.39304 -11.99946 -11.58802 -11.36821 -10.84044 -10.70374 -10.60563 -10.34242 -10.20537 -9.50759 -8.45756 -6.07874 -0.37392 0.23024 1.31133 1.33959 1.44076 1.69756 1.79383 1.93225 2.20017 2.20787 2.81753 2.83890 3.10144 3.21080 3.59146 3.75567 3.97535 4.01286 4.19554 4.31929 4.35555 4.38402 4.38795 4.50628 4.73282 4.89665 5.00733 5.23503 5.42337 5.48565 5.87443 6.21805 6.40033 6.48777 6.77390 6.81328 7.11730 7.28554 7.77712 8.70889 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003506 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.298195 B = 7984.499470 C = 8812.346329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.307 6.307 3 C 0.128 3.872 4 C -0.169 4.169 5 C -0.084 4.084 6 C 0.050 3.950 7 N -0.449 5.449 8 C 0.001 3.999 9 C 0.567 3.433 10 O -0.552 6.552 11 N -0.699 5.699 12 C 0.117 3.883 13 C 0.444 3.556 14 O -0.613 6.613 15 N -0.576 5.576 16 C -0.333 4.333 17 H 0.062 0.938 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.233 1.233 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.416 0.584 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.392 0.608 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.666 6.280 0.091 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.218 6.218 3 C 0.077 3.923 4 C -0.195 4.195 5 C -0.103 4.103 6 C -0.112 4.112 7 N -0.161 5.161 8 C -0.135 4.135 9 C 0.354 3.646 10 O -0.430 6.430 11 N -0.353 5.353 12 C -0.010 4.010 13 C 0.232 3.768 14 O -0.499 6.499 15 N -0.216 5.216 16 C -0.462 4.462 17 H 0.081 0.919 18 C -0.207 4.207 19 N -0.566 5.566 20 Si 0.780 3.220 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.157 1.157 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.095 0.905 27 H 0.202 0.798 28 H 0.209 0.791 29 H 0.209 0.791 30 H 0.255 0.745 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.228 0.772 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.585 5.942 0.091 28.218 hybrid contribution -0.151 -0.478 0.001 0.501 sum -27.736 5.465 0.092 28.270 Atomic orbital electron populations 1.23545 0.76003 1.05947 1.03069 1.86377 1.23690 1.25324 1.86384 1.20207 0.91687 0.87129 0.93268 1.22198 1.02707 0.90501 1.04089 1.22748 0.94850 0.99965 0.92737 1.23396 0.92985 0.96166 0.98690 1.67586 1.41430 0.98145 1.08965 1.20332 0.89454 0.92235 1.11517 1.18047 0.81646 0.88370 0.76563 1.90765 1.72152 1.28709 1.51412 1.45602 1.05559 1.10597 1.73555 1.20946 0.86626 0.88146 1.05308 1.20464 0.88178 0.85723 0.82462 1.90539 1.82607 1.20491 1.56217 1.41898 1.05357 1.08067 1.66310 1.19045 0.81023 0.95245 1.50877 0.91949 1.26074 0.94442 1.04599 0.95618 1.69778 1.01264 1.36280 1.49231 0.85428 0.80034 0.76420 0.80137 1.17990 1.19637 1.15669 0.90489 0.86963 0.90494 0.79832 0.79108 0.79148 0.74494 0.87591 0.87482 0.77161 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.83 113.37 1.11 1.21 16 2 O -0.31 -7.61 8.56 -68.56 -0.59 -8.20 16 3 C 0.13 3.08 6.71 22.94 0.15 3.23 16 4 C -0.17 -2.29 9.13 22.55 0.21 -2.08 16 5 C -0.08 -0.91 10.10 22.41 0.23 -0.69 16 6 C 0.05 0.89 11.17 84.89 0.95 1.84 16 7 N -0.45 -12.58 9.54 -184.62 -1.76 -14.34 16 8 C 0.00 0.03 6.76 41.93 0.28 0.31 16 9 C 0.57 20.71 7.80 86.78 0.68 21.38 16 10 O -0.55 -21.94 15.14 17.11 0.26 -21.68 16 11 N -0.70 -26.39 5.52 -469.71 -2.59 -28.98 16 12 C 0.12 4.34 6.15 85.64 0.53 4.86 16 13 C 0.44 20.94 7.85 87.66 0.69 21.63 16 14 O -0.61 -34.10 15.24 -3.05 -0.05 -34.15 16 15 N -0.58 -27.85 5.09 -306.98 -1.56 -29.41 16 16 C -0.33 -19.56 10.16 84.04 0.85 -18.71 16 17 H 0.06 4.32 7.39 -2.91 -0.02 4.30 16 18 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 19 N -0.93 -55.49 13.96 21.66 0.30 -55.18 16 20 Si 0.96 39.13 27.74 68.60 1.90 41.03 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 24 H 0.08 0.56 7.70 -2.39 -0.02 0.55 16 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 0.56 7.70 -2.38 -0.02 0.55 16 27 H 0.18 0.97 6.46 -2.91 -0.02 0.95 16 28 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 29 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.42 16.64 6.76 -92.71 -0.63 16.02 16 31 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 32 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 33 H 0.39 15.90 5.76 -92.70 -0.53 15.37 16 34 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -83.94 303.30 2.01 -81.93 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.05 Total: 35.94 kcal Atomic # 6 Polarization: 26.90 SS G_CDS: 6.15 Total: 33.04 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.61 Total: -127.92 kcal Atomic # 8 Polarization: -63.66 SS G_CDS: -0.37 Total: -64.03 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -83.94 2.01 -81.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539456429.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.396 kcal (2) G-P(sol) polarization free energy of solvation -83.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds