Wall clock time and date at job start Tue Mar 31 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34140 * 125.37504 * 2 1 4 4 C 1.38340 * 108.69359 * 179.86927 * 3 2 1 5 5 C 1.47423 * 126.40163 * 180.15121 * 4 3 2 6 6 O 1.21606 * 119.99717 * 0.25271 * 5 4 3 7 7 N 1.34775 * 120.00393 * 180.24957 * 5 4 3 8 8 C 1.46504 * 120.00014 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46863 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00181 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99726 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99608 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00238 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99682 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47366 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46840 * 120.00433 * 16 14 12 19 19 H 1.48504 * 109.47158 * 240.00305 * 16 14 12 20 20 C 1.41081 * 107.20615 * 0.38407 * 4 3 2 21 21 C 1.37844 * 106.82595 * 359.76951 * 20 4 3 22 22 C 1.41541 * 125.98990 * 180.02562 * 21 20 4 23 23 O 1.21412 * 120.00006 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47391 * 269.69538 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.69595 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.69722 * 1 2 3 27 27 H 1.07996 * 125.65616 * 0.02562 * 3 2 1 28 28 H 0.96995 * 119.99660 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.47011 * 300.00234 * 8 7 5 30 30 H 1.08993 * 109.46968 * 59.99830 * 8 7 5 31 31 H 0.96993 * 119.99897 * 359.97438 * 11 9 8 32 32 H 0.97005 * 119.99955 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.58663 * 179.76449 * 20 4 3 34 34 H 1.08000 * 120.00080 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.0938 0.0000 4 6 3.5667 0.6966 0.0030 5 6 4.7454 1.5822 0.0071 6 8 4.5989 2.7893 0.0129 7 7 5.9853 1.0539 0.0047 8 6 7.1565 1.9339 0.0094 9 6 8.4116 1.0998 0.0047 10 8 8.3352 -0.1108 -0.0014 11 7 9.6189 1.6989 0.0084 12 6 10.7607 0.9400 0.0047 13 1 10.6927 -0.1379 -0.0008 14 6 12.0053 1.5576 0.0079 15 7 12.0881 2.8691 0.0151 16 14 13.5611 0.5236 0.0036 17 1 13.1984 -0.9163 -0.0039 18 1 14.3612 0.8384 -1.2072 19 1 14.3604 0.8269 1.2178 20 6 3.5797 -0.7141 -0.0042 21 6 2.2640 -1.1252 -0.0059 22 6 1.8116 -2.4663 -0.0121 23 8 2.6139 -3.3776 -0.0169 24 1 -0.3634 -0.0055 1.0276 25 1 -0.3633 -0.8873 -0.5186 26 1 -0.3633 0.8927 -0.5091 27 1 1.8905 2.1151 0.0004 28 1 6.1021 0.0910 -0.0002 29 1 7.1384 2.5675 -0.8774 30 1 7.1381 2.5584 0.9025 31 1 9.6799 2.6669 0.0137 32 1 12.9570 3.3003 0.0170 33 1 4.4528 -1.3498 -0.0077 34 1 0.7528 -2.6791 -0.0126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556512339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:49 Heat of formation + Delta-G solvation = -56.570205 kcal Electronic energy + Delta-G solvation = -20339.033121 eV Core-core repulsion = 16852.276795 eV Total energy + Delta-G solvation = -3486.756326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.84312 -39.27077 -38.71078 -37.93177 -34.40168 -33.72026 -33.29040 -31.33812 -30.26607 -28.33063 -26.70899 -24.73503 -24.33108 -22.24251 -19.90614 -19.78184 -19.34354 -18.36831 -17.89493 -16.29319 -16.08371 -15.93850 -15.56238 -15.20051 -15.08964 -14.81846 -14.37242 -14.16937 -13.89725 -13.83394 -13.73947 -13.22826 -12.94828 -12.59628 -12.50860 -12.10918 -11.85703 -11.59885 -11.11120 -10.37481 -10.29498 -10.22898 -9.75938 -9.60994 -9.17799 -8.76234 -8.58616 -8.52657 -8.06164 -6.47997 -3.89659 0.76812 1.70522 2.26910 2.81266 3.13354 3.25199 3.31951 3.52393 3.62877 3.79653 4.02420 4.15320 4.22107 4.49637 4.58809 4.83983 4.88885 4.92470 5.06652 5.15054 5.20774 5.62341 5.73400 5.98177 6.01630 6.11969 6.25161 6.48318 6.69897 6.76040 7.22908 7.50033 7.91681 7.96468 8.48550 8.54837 9.08676 9.43440 9.91583 10.69082 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.003142 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.288180 B = 8908.344516 C = 9797.185254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.415 5.415 3 C 0.110 3.890 4 C -0.233 4.233 5 C 0.587 3.413 6 O -0.559 6.559 7 N -0.702 5.702 8 C 0.110 3.890 9 C 0.429 3.571 10 O -0.595 6.595 11 N -0.550 5.550 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.280 1.280 20 C -0.052 4.052 21 C -0.127 4.127 22 C 0.403 3.597 23 O -0.458 6.458 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.186 0.814 28 H 0.411 0.589 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.396 0.604 32 H 0.273 0.727 33 H 0.159 0.841 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.748 -2.567 -0.064 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.089 5.089 3 C -0.033 4.033 4 C -0.242 4.242 5 C 0.374 3.626 6 O -0.439 6.439 7 N -0.355 5.355 8 C -0.017 4.017 9 C 0.214 3.786 10 O -0.482 6.482 11 N -0.185 5.185 12 C -0.433 4.433 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.536 5.536 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.077 4.077 21 C -0.233 4.233 22 C 0.264 3.736 23 O -0.332 6.332 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.203 0.797 28 H 0.249 0.751 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.177 0.823 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.639 -2.994 -0.063 23.828 hybrid contribution 0.835 -0.014 0.005 0.835 sum -22.805 -3.007 -0.058 23.002 Atomic orbital electron populations 1.22281 0.75879 1.05381 1.04343 1.43796 1.06926 1.05639 1.52569 1.22400 0.89493 0.92077 0.99298 1.19675 0.93034 0.93521 1.17939 1.17277 0.82195 0.86984 0.76134 1.90750 1.86586 1.14583 1.51993 1.45504 1.04352 1.11696 1.73932 1.20950 0.84688 0.92786 1.03308 1.19767 0.84700 0.88636 0.85467 1.90507 1.86422 1.14109 1.57137 1.41798 1.04247 1.09689 1.62799 1.19789 0.82622 0.92883 1.47974 0.87614 1.25320 0.99589 0.95986 0.96881 1.69625 1.26248 1.08116 1.49610 0.85762 0.80652 0.79924 0.77785 1.19109 1.20645 1.20640 1.21922 0.95880 0.93958 0.95946 1.20382 0.91036 0.89698 1.22231 1.21486 0.94632 0.85419 0.72060 1.90647 1.59661 1.46734 1.36143 0.89734 0.89094 0.88744 0.79699 0.75062 0.89747 0.89741 0.77040 0.91689 0.82302 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.16 10.84 59.85 0.65 0.81 16 2 N -0.42 -3.21 3.13 -121.39 -0.38 -3.59 16 3 C 0.11 1.09 11.15 -16.51 -0.18 0.90 16 4 C -0.23 -3.11 6.13 -105.04 -0.64 -3.76 16 5 C 0.59 9.79 7.81 -12.52 -0.10 9.70 16 6 O -0.56 -10.58 16.90 5.27 0.09 -10.49 16 7 N -0.70 -12.41 5.52 -62.57 -0.35 -12.76 16 8 C 0.11 2.10 6.15 -5.19 -0.03 2.07 16 9 C 0.43 10.06 7.85 -10.99 -0.09 9.98 16 10 O -0.60 -15.64 15.24 5.55 0.08 -15.56 16 11 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 12 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 13 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 15 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 16 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.05 -0.66 10.01 -38.65 -0.39 -1.05 16 21 C -0.13 -1.31 6.68 -83.97 -0.56 -1.87 16 22 C 0.40 3.75 11.03 31.99 0.35 4.10 16 23 O -0.46 -6.32 17.61 5.44 0.10 -6.22 16 24 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 25 H 0.09 0.08 7.28 -51.93 -0.38 -0.30 16 26 H 0.09 0.09 8.13 -51.93 -0.42 -0.33 16 27 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.41 7.28 6.41 -40.82 -0.26 7.02 16 29 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.16 2.11 7.53 -52.49 -0.40 1.72 16 34 H 0.09 0.42 7.31 -52.49 -0.38 0.03 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -35.42 312.95 -4.69 -40.11 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -3.36 Total: 12.44 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -1.23 Total: 12.93 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.06 Total: -53.73 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: 0.27 Total: -32.27 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.42 -4.69 -40.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556512339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.462 kcal (2) G-P(sol) polarization free energy of solvation -35.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds