Wall clock time and date at job start Tue Mar 31 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34140 * 125.37504 * 2 1 4 4 C 1.38340 * 108.69359 * 179.86927 * 3 2 1 5 5 C 1.47423 * 126.40163 * 180.15121 * 4 3 2 6 6 O 1.21606 * 119.99717 * 0.25271 * 5 4 3 7 7 N 1.34775 * 120.00393 * 180.24957 * 5 4 3 8 8 C 1.46504 * 120.00014 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46863 * 180.02562 * 8 7 5 10 10 O 1.21293 * 120.00181 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99726 * 180.02562 * 9 8 7 12 12 C 1.37099 * 119.99608 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00238 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99682 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00039 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47366 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46840 * 120.00433 * 16 14 12 19 19 H 1.48504 * 109.47158 * 240.00305 * 16 14 12 20 20 C 1.41081 * 107.20615 * 0.38407 * 4 3 2 21 21 C 1.37844 * 106.82595 * 359.76951 * 20 4 3 22 22 C 1.41541 * 125.98990 * 180.02562 * 21 20 4 23 23 O 1.21412 * 120.00006 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47391 * 269.69538 * 1 2 3 25 25 H 1.09001 * 109.46813 * 149.69595 * 1 2 3 26 26 H 1.09004 * 109.47041 * 29.69722 * 1 2 3 27 27 H 1.07996 * 125.65616 * 0.02562 * 3 2 1 28 28 H 0.96995 * 119.99660 * 0.02562 * 7 5 4 29 29 H 1.08999 * 109.47011 * 300.00234 * 8 7 5 30 30 H 1.08993 * 109.46968 * 59.99830 * 8 7 5 31 31 H 0.96993 * 119.99897 * 359.97438 * 11 9 8 32 32 H 0.97005 * 119.99955 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.58663 * 179.76449 * 20 4 3 34 34 H 1.08000 * 120.00080 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.0938 0.0000 4 6 3.5667 0.6966 0.0030 5 6 4.7454 1.5822 0.0071 6 8 4.5989 2.7893 0.0129 7 7 5.9853 1.0539 0.0047 8 6 7.1565 1.9339 0.0094 9 6 8.4116 1.0998 0.0047 10 8 8.3352 -0.1108 -0.0014 11 7 9.6189 1.6989 0.0084 12 6 10.7607 0.9400 0.0047 13 1 10.6927 -0.1379 -0.0008 14 6 12.0053 1.5576 0.0079 15 7 12.0881 2.8691 0.0151 16 14 13.5611 0.5236 0.0036 17 1 13.1984 -0.9163 -0.0039 18 1 14.3612 0.8384 -1.2072 19 1 14.3604 0.8269 1.2178 20 6 3.5797 -0.7141 -0.0042 21 6 2.2640 -1.1252 -0.0059 22 6 1.8116 -2.4663 -0.0121 23 8 2.6139 -3.3776 -0.0169 24 1 -0.3634 -0.0055 1.0276 25 1 -0.3633 -0.8873 -0.5186 26 1 -0.3633 0.8927 -0.5091 27 1 1.8905 2.1151 0.0004 28 1 6.1021 0.0910 -0.0002 29 1 7.1384 2.5675 -0.8774 30 1 7.1381 2.5584 0.9025 31 1 9.6799 2.6669 0.0137 32 1 12.9570 3.3003 0.0170 33 1 4.4528 -1.3498 -0.0077 34 1 0.7528 -2.6791 -0.0126 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556512339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:48 Heat of formation + Delta-G solvation = -84.235247 kcal Electronic energy + Delta-G solvation = -20340.232767 eV Core-core repulsion = 16852.276795 eV Total energy + Delta-G solvation = -3487.955973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.63763 -40.76308 -39.82058 -39.45211 -36.25170 -35.29625 -34.08112 -33.37308 -31.11295 -29.65926 -27.63397 -26.34954 -25.37191 -23.27838 -21.41648 -20.97296 -20.41460 -20.02532 -19.25150 -17.66683 -17.02970 -16.86885 -16.82379 -16.73557 -16.46474 -16.17990 -15.73807 -15.51626 -15.33117 -14.91090 -14.69639 -14.47153 -13.94549 -13.63435 -13.57605 -13.46443 -13.18085 -13.03493 -12.90749 -12.45646 -12.11923 -11.59064 -11.25649 -10.88889 -10.57732 -10.26110 -10.10047 -9.88459 -9.42694 -8.51977 -6.02138 -0.00135 0.69058 1.34407 1.42142 1.56279 1.63875 1.88953 2.02060 2.14854 2.35287 2.47631 3.11868 3.15044 3.39099 3.78264 3.82639 4.09136 4.13564 4.25239 4.40918 4.43683 4.44351 4.51192 4.79719 4.82681 4.88700 5.27154 5.36115 5.38238 5.66624 5.91295 6.06225 6.46176 6.51474 6.55721 7.02833 7.18677 7.43211 7.94077 8.65273 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.003142 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.288180 B = 8908.344516 C = 9797.185254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.394 5.394 3 C 0.128 3.872 4 C -0.267 4.267 5 C 0.588 3.412 6 O -0.585 6.585 7 N -0.709 5.709 8 C 0.123 3.877 9 C 0.431 3.569 10 O -0.626 6.626 11 N -0.558 5.558 12 C -0.338 4.338 13 H 0.084 0.916 14 C -0.010 4.010 15 N -0.915 5.915 16 Si 0.997 3.003 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.270 1.270 20 C -0.083 4.083 21 C -0.126 4.126 22 C 0.412 3.588 23 O -0.510 6.510 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.212 0.788 28 H 0.409 0.591 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.280 0.720 33 H 0.138 0.862 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.229 -2.408 -0.080 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.066 5.066 3 C -0.018 4.018 4 C -0.276 4.276 5 C 0.378 3.622 6 O -0.467 6.467 7 N -0.361 5.361 8 C -0.005 4.005 9 C 0.218 3.782 10 O -0.514 6.514 11 N -0.194 5.194 12 C -0.467 4.467 13 H 0.102 0.898 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.108 4.108 21 C -0.234 4.234 22 C 0.276 3.724 23 O -0.386 6.386 24 H 0.123 0.877 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.229 0.771 28 H 0.247 0.753 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.177 -2.820 -0.079 26.329 hybrid contribution 1.448 -0.048 0.013 1.449 sum -24.729 -2.868 -0.066 24.895 Atomic orbital electron populations 1.22831 0.72031 1.07798 1.06400 1.44114 1.08876 1.03999 1.49622 1.22691 0.88305 0.93564 0.97235 1.19502 0.93351 0.93258 1.21492 1.17734 0.82462 0.87116 0.74916 1.90718 1.86899 1.15677 1.53430 1.45569 1.04547 1.11365 1.74665 1.20787 0.83023 0.92235 1.04416 1.20465 0.85543 0.88596 0.83555 1.90483 1.87108 1.15804 1.58008 1.41832 1.04394 1.09737 1.63425 1.19769 0.84190 0.92331 1.50397 0.89779 1.26127 1.02005 0.97196 0.95739 1.69684 1.27416 1.09155 1.49297 0.84812 0.76805 0.77947 0.78406 1.19609 1.19485 1.19482 1.21885 0.97005 0.93865 0.98087 1.20572 0.90434 0.91166 1.21180 1.22304 0.96601 0.83945 0.69527 1.90647 1.61478 1.47965 1.38520 0.87749 0.86684 0.86558 0.77149 0.75297 0.88530 0.88529 0.76605 0.91011 0.84420 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.00 10.84 127.77 1.38 1.38 16 2 N -0.39 -4.77 3.13 -537.97 -1.68 -6.45 16 3 C 0.13 2.23 11.15 84.36 0.94 3.18 16 4 C -0.27 -7.15 6.13 -20.14 -0.12 -7.27 16 5 C 0.59 19.97 7.81 86.66 0.68 20.65 16 6 O -0.58 -22.15 16.90 -4.05 -0.07 -22.22 16 7 N -0.71 -26.01 5.52 -470.12 -2.59 -28.61 16 8 C 0.12 4.78 6.15 85.63 0.53 5.31 16 9 C 0.43 20.94 7.85 87.66 0.69 21.63 16 10 O -0.63 -34.30 15.24 -3.07 -0.05 -34.35 16 11 N -0.56 -28.99 5.29 -306.98 -1.62 -30.61 16 12 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 13 H 0.08 5.06 7.16 -2.91 -0.02 5.03 16 14 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 15 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 16 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 C -0.08 -2.18 10.01 22.87 0.23 -1.95 16 21 C -0.13 -2.37 6.68 38.89 0.26 -2.11 16 22 C 0.41 6.70 11.03 68.63 0.76 7.45 16 23 O -0.51 -13.89 17.61 -3.44 -0.06 -13.95 16 24 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 25 H 0.11 -0.48 7.28 -2.39 -0.02 -0.50 16 26 H 0.12 -0.40 8.13 -2.38 -0.02 -0.42 16 27 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 28 H 0.41 15.44 6.41 -92.71 -0.59 14.84 16 29 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 32 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 33 H 0.14 4.07 7.53 -2.91 -0.02 4.05 16 34 H 0.15 0.63 7.31 -2.91 -0.02 0.60 16 Total: -1.00 -79.93 312.95 2.70 -77.23 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -0.16 Total: 33.44 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.62 Total: 29.86 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -5.62 Total: -114.79 kcal Atomic # 8 Polarization: -70.34 SS G_CDS: -0.18 Total: -70.52 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.93 2.70 -77.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556512339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.002 kcal (2) G-P(sol) polarization free energy of solvation -79.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds