Wall clock time and date at job start Tue Mar 31 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46805 * 2 1 4 4 C 1.50704 * 109.47171 * 240.00098 * 2 1 3 5 5 H 1.07997 * 119.99898 * 274.93554 * 4 2 1 6 6 C 1.37872 * 119.99974 * 94.92865 * 4 2 1 7 7 N 1.31518 * 120.00125 * 184.88563 * 6 4 2 8 8 Si 1.86800 * 120.00228 * 4.89148 * 6 4 2 9 9 H 1.48500 * 109.47491 * 94.86206 * 8 6 4 10 10 H 1.48500 * 109.47380 * 214.86461 * 8 6 4 11 11 H 1.48503 * 109.46718 * 334.86228 * 8 6 4 12 12 N 1.46499 * 109.47260 * 120.00064 * 2 1 3 13 13 C 1.34778 * 119.99730 * 274.99903 * 12 2 1 14 14 O 1.21579 * 120.00470 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99740 * 179.97438 * 13 12 2 16 16 C 1.39559 * 119.99892 * 184.60634 * 15 13 12 17 17 C 1.39342 * 120.82761 * 324.81296 * 16 15 13 18 18 C 1.38300 * 119.27634 * 179.70805 * 17 16 15 19 19 N 1.31608 * 120.99308 * 0.57542 * 18 17 16 20 20 C 1.32836 * 121.80826 * 359.72002 * 19 18 17 21 21 C 1.48086 * 119.69479 * 179.97438 * 20 19 18 22 22 O 1.21426 * 120.00020 * 179.97438 * 21 20 19 23 23 O 1.34671 * 119.99926 * 359.97438 * 21 20 19 24 24 C 1.39119 * 120.61363 * 359.97438 * 20 19 18 25 25 H 1.08994 * 109.47140 * 55.01377 * 1 2 3 26 26 H 1.09003 * 109.46967 * 175.01502 * 1 2 3 27 27 H 1.09000 * 109.47044 * 295.01218 * 1 2 3 28 28 H 0.96993 * 120.00429 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99996 * 94.99937 * 12 2 1 30 30 H 0.96995 * 120.00115 * 4.61103 * 15 13 12 31 31 H 1.07997 * 120.35663 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.50436 * 180.32271 * 18 17 16 33 33 H 0.96701 * 117.00125 * 180.02562 * 23 21 20 34 34 H 1.07993 * 120.52241 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1365 -1.7853 -1.2287 6 6 2.3589 0.0120 -2.3585 7 7 2.7052 -0.6134 -3.4625 8 14 2.3096 1.8789 -2.3189 9 1 3.6659 2.4037 -2.0184 10 1 1.8623 2.3905 -3.6392 11 1 1.3614 2.3267 -1.2674 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1613 2.4119 15 7 2.5959 -0.6537 3.4576 16 6 2.6384 0.0158 4.6814 17 6 2.9423 1.3744 4.7420 18 6 2.9696 2.0072 5.9714 19 7 2.7243 1.3432 7.0809 20 6 2.4361 0.0465 7.0717 21 6 2.1684 -0.6546 8.3484 22 8 1.9040 -1.8397 8.3464 23 8 2.2183 0.0223 9.5116 24 6 2.3833 -0.6590 5.8739 25 1 -0.3633 0.5892 -0.8419 26 1 -0.3633 -1.0238 -0.0893 27 1 -0.3633 0.4345 0.9313 28 1 2.9352 -0.1052 -4.2560 29 1 2.2491 -1.6318 1.1526 30 1 2.8895 -1.5763 3.3991 31 1 3.1501 1.9280 3.8383 32 1 3.1996 3.0612 6.0221 33 1 2.0367 -0.4782 10.3189 34 1 2.1493 -1.7133 5.8682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573576879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:25 Heat of formation + Delta-G solvation = -78.145500 kcal Electronic energy + Delta-G solvation = -20800.410160 eV Core-core repulsion = 17312.718259 eV Total energy + Delta-G solvation = -3487.691901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12660 -40.17004 -39.08008 -36.37203 -35.78423 -34.69415 -32.59660 -31.72410 -31.17565 -29.27056 -25.66305 -25.41535 -23.64196 -22.56660 -21.05859 -20.08073 -18.91702 -18.55685 -17.95371 -16.70334 -16.49898 -16.09151 -15.99711 -15.73969 -15.19175 -14.69916 -14.44848 -14.04122 -13.79823 -13.60667 -13.39007 -12.64645 -12.54215 -12.29887 -11.82308 -11.72703 -11.20765 -11.15443 -10.96905 -10.89232 -10.69662 -10.16871 -9.92051 -9.62194 -9.40685 -9.28392 -8.85209 -8.76270 -8.21170 -6.33243 -4.38043 0.35775 0.99182 2.21240 2.47636 2.89316 3.18872 3.27942 3.34305 3.39226 3.71845 4.10714 4.23468 4.45740 4.74884 4.76372 4.82245 5.09270 5.30362 5.42641 5.49334 5.91060 6.12250 6.17573 6.23288 6.41600 6.57838 6.61824 6.72091 6.93622 7.18421 7.30111 7.41570 7.43669 7.76724 8.09624 8.46724 8.67217 8.86711 9.27727 10.78151 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038290 B = 0.003519 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.086804 B = 7954.146336 C = 8345.277807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.243 3.757 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.255 1.255 12 N -0.708 5.708 13 C 0.692 3.308 14 O -0.583 6.583 15 N -0.689 5.689 16 C 0.216 3.784 17 C -0.141 4.141 18 C 0.112 3.888 19 N -0.454 5.454 20 C 0.100 3.900 21 C 0.547 3.453 22 O -0.509 6.509 23 O -0.492 6.492 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.269 0.731 29 H 0.393 0.607 30 H 0.411 0.589 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.412 0.588 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.922 0.690 19.305 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.521 5.521 8 Si 0.699 3.301 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.180 1.180 12 N -0.360 5.360 13 C 0.393 3.607 14 O -0.461 6.461 15 N -0.337 5.337 16 C 0.110 3.890 17 C -0.163 4.163 18 C -0.047 4.047 19 N -0.168 5.168 20 C -0.037 4.037 21 C 0.390 3.610 22 O -0.397 6.397 23 O -0.302 6.302 24 C -0.164 4.164 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.226 0.774 30 H 0.247 0.753 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.270 0.730 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.693 2.063 19.427 19.548 hybrid contribution 0.102 -0.824 -0.555 0.998 sum 0.794 1.240 18.872 18.929 Atomic orbital electron populations 1.22236 0.98498 1.00663 0.99346 1.19213 0.90887 0.94388 0.81401 0.92632 1.20989 1.45575 0.95676 0.94794 0.90278 1.24947 0.93463 0.98788 0.95111 1.69878 1.44239 1.36312 1.01719 0.86892 0.79524 0.85689 0.78011 1.19961 1.20913 1.17961 1.46098 1.67701 1.13787 1.08365 1.16239 0.78556 0.85531 0.80390 1.90872 1.57242 1.14057 1.83967 1.42788 1.68005 1.16815 1.06128 1.17595 0.94248 0.92344 0.84815 1.22760 0.97924 0.94551 1.01113 1.22751 0.95211 1.00362 0.86377 1.67633 1.10287 1.06956 1.31896 1.19537 1.03408 0.90786 0.89972 1.20468 0.72651 0.84059 0.83851 1.90907 1.45029 1.16093 1.87664 1.84689 1.82624 1.46055 1.16800 1.21762 1.01638 1.02459 0.90549 0.92756 0.93386 0.95174 0.92106 0.77388 0.75329 0.81976 0.81393 0.73036 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.24 5.44 2.20 -69.08 -0.15 5.29 16 3 H 0.06 1.36 4.50 -51.93 -0.23 1.12 16 4 C -0.53 -13.60 9.05 -34.44 -0.31 -13.91 16 5 H 0.08 2.13 8.06 -52.49 -0.42 1.71 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 8 Si 0.87 20.53 27.31 -169.99 -4.64 15.89 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.26 -5.92 6.36 56.52 0.36 -5.56 16 12 N -0.71 -13.04 5.07 -59.81 -0.30 -13.35 16 13 C 0.69 12.22 8.39 -86.92 -0.73 11.49 16 14 O -0.58 -12.15 13.51 5.30 0.07 -12.07 16 15 N -0.69 -9.09 5.35 -14.08 -0.08 -9.17 16 16 C 0.22 2.83 6.33 -83.51 -0.53 2.31 16 17 C -0.14 -1.87 8.78 -39.15 -0.34 -2.21 16 18 C 0.11 1.31 11.17 -17.62 -0.20 1.11 16 19 N -0.45 -5.83 10.12 -9.89 -0.10 -5.93 16 20 C 0.10 1.25 6.74 -83.07 -0.56 0.69 16 21 C 0.55 6.38 8.32 34.77 0.29 6.67 16 22 O -0.51 -6.74 17.11 -19.21 -0.33 -7.07 16 23 O -0.49 -4.47 13.24 -40.41 -0.54 -5.01 16 24 C -0.14 -1.67 9.58 -38.83 -0.37 -2.05 16 25 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.39 6.20 8.61 -40.82 -0.35 5.85 16 30 H 0.41 4.04 8.84 -40.82 -0.36 3.68 16 31 H 0.16 2.37 6.33 -52.49 -0.33 2.04 16 32 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.41 1.55 9.11 45.56 0.42 1.96 16 34 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -33.01 305.62 -5.74 -38.74 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -2.55 Total: 9.05 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.65 Total: 8.74 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.29 Total: -52.88 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.79 Total: -24.15 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.64 Total: 15.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.01 -5.74 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573576879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.401 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds