Wall clock time and date at job start Tue Mar 31 2020 00:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46805 * 2 1 4 4 C 1.50704 * 109.47171 * 240.00098 * 2 1 3 5 5 H 1.07997 * 119.99898 * 274.93554 * 4 2 1 6 6 C 1.37872 * 119.99974 * 94.92865 * 4 2 1 7 7 N 1.31518 * 120.00125 * 184.88563 * 6 4 2 8 8 Si 1.86800 * 120.00228 * 4.89148 * 6 4 2 9 9 H 1.48500 * 109.47491 * 94.86206 * 8 6 4 10 10 H 1.48500 * 109.47380 * 214.86461 * 8 6 4 11 11 H 1.48503 * 109.46718 * 334.86228 * 8 6 4 12 12 N 1.46499 * 109.47260 * 120.00064 * 2 1 3 13 13 C 1.34778 * 119.99730 * 274.99903 * 12 2 1 14 14 O 1.21579 * 120.00470 * 0.02562 * 13 12 2 15 15 N 1.34776 * 119.99740 * 179.97438 * 13 12 2 16 16 C 1.39559 * 119.99892 * 184.60634 * 15 13 12 17 17 C 1.39342 * 120.82761 * 324.81296 * 16 15 13 18 18 C 1.38300 * 119.27634 * 179.70805 * 17 16 15 19 19 N 1.31608 * 120.99308 * 0.57542 * 18 17 16 20 20 C 1.32836 * 121.80826 * 359.72002 * 19 18 17 21 21 C 1.48086 * 119.69479 * 179.97438 * 20 19 18 22 22 O 1.21426 * 120.00020 * 179.97438 * 21 20 19 23 23 O 1.34671 * 119.99926 * 359.97438 * 21 20 19 24 24 C 1.39119 * 120.61363 * 359.97438 * 20 19 18 25 25 H 1.08994 * 109.47140 * 55.01377 * 1 2 3 26 26 H 1.09003 * 109.46967 * 175.01502 * 1 2 3 27 27 H 1.09000 * 109.47044 * 295.01218 * 1 2 3 28 28 H 0.96993 * 120.00429 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99996 * 94.99937 * 12 2 1 30 30 H 0.96995 * 120.00115 * 4.61103 * 15 13 12 31 31 H 1.07997 * 120.35663 * 359.97438 * 17 16 15 32 32 H 1.08006 * 119.50436 * 180.32271 * 18 17 16 33 33 H 0.96701 * 117.00125 * 180.02562 * 23 21 20 34 34 H 1.07993 * 120.52241 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1365 -1.7853 -1.2287 6 6 2.3589 0.0120 -2.3585 7 7 2.7052 -0.6134 -3.4625 8 14 2.3096 1.8789 -2.3189 9 1 3.6659 2.4037 -2.0184 10 1 1.8623 2.3905 -3.6392 11 1 1.3614 2.3267 -1.2674 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8575 1.1613 2.4119 15 7 2.5959 -0.6537 3.4576 16 6 2.6384 0.0158 4.6814 17 6 2.9423 1.3744 4.7420 18 6 2.9696 2.0072 5.9714 19 7 2.7243 1.3432 7.0809 20 6 2.4361 0.0465 7.0717 21 6 2.1684 -0.6546 8.3484 22 8 1.9040 -1.8397 8.3464 23 8 2.2183 0.0223 9.5116 24 6 2.3833 -0.6590 5.8739 25 1 -0.3633 0.5892 -0.8419 26 1 -0.3633 -1.0238 -0.0893 27 1 -0.3633 0.4345 0.9313 28 1 2.9352 -0.1052 -4.2560 29 1 2.2491 -1.6318 1.1526 30 1 2.8895 -1.5763 3.3991 31 1 3.1501 1.9280 3.8383 32 1 3.1996 3.0612 6.0221 33 1 2.0367 -0.4782 10.3189 34 1 2.1493 -1.7133 5.8682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573576879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:25 Heat of formation + Delta-G solvation = -104.088286 kcal Electronic energy + Delta-G solvation = -20801.535124 eV Core-core repulsion = 17312.718259 eV Total energy + Delta-G solvation = -3488.816865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16786 -41.26121 -40.18474 -37.25661 -37.17064 -36.13217 -34.46277 -32.68652 -32.52397 -30.72964 -27.33274 -26.61580 -24.73309 -23.70156 -22.35163 -21.61310 -20.23511 -19.72350 -18.86547 -18.47579 -17.56780 -17.18866 -17.05183 -16.85413 -16.53644 -16.03536 -15.91739 -15.21216 -15.02140 -14.76666 -14.56489 -14.44384 -14.28952 -13.43673 -13.24520 -13.00538 -12.77342 -12.63011 -12.49000 -12.17175 -11.99186 -11.84357 -11.47146 -11.20248 -10.83779 -10.71570 -10.39317 -10.10266 -9.61018 -8.38628 -6.45878 -0.59956 0.00595 1.27408 1.31495 1.37616 1.44390 1.47957 1.91537 2.05731 2.28438 2.71912 2.94521 3.21008 3.34070 3.76541 3.84943 3.86477 4.34697 4.47218 4.48201 4.59278 4.73313 4.83301 4.92030 5.06918 5.18742 5.34244 5.41642 5.45823 5.57163 5.68635 5.83433 6.22890 6.59703 6.60854 6.96946 7.04548 7.21330 7.48221 8.76140 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038290 B = 0.003519 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.086804 B = 7954.146336 C = 8345.277807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.249 3.751 3 H 0.039 0.961 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.926 3.074 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.250 1.250 12 N -0.709 5.709 13 C 0.697 3.303 14 O -0.614 6.614 15 N -0.672 5.672 16 C 0.202 3.798 17 C -0.151 4.151 18 C 0.119 3.881 19 N -0.463 5.463 20 C 0.089 3.911 21 C 0.554 3.446 22 O -0.529 6.529 23 O -0.489 6.489 24 C -0.130 4.130 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.271 0.729 29 H 0.406 0.594 30 H 0.427 0.573 31 H 0.148 0.852 32 H 0.198 0.802 33 H 0.434 0.566 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 1.197 21.308 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.146 3.854 3 H 0.057 0.943 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.168 4.168 7 N -0.568 5.568 8 Si 0.751 3.249 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.174 1.174 12 N -0.361 5.361 13 C 0.397 3.603 14 O -0.494 6.494 15 N -0.321 5.321 16 C 0.097 3.903 17 C -0.174 4.174 18 C -0.040 4.040 19 N -0.176 5.176 20 C -0.048 4.048 21 C 0.397 3.603 22 O -0.418 6.418 23 O -0.301 6.301 24 C -0.154 4.154 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.241 0.759 30 H 0.267 0.733 31 H 0.166 0.834 32 H 0.215 0.785 33 H 0.297 0.703 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.519 2.529 21.510 21.664 hybrid contribution 0.175 -1.020 -1.010 1.446 sum 0.694 1.509 20.500 20.567 Atomic orbital electron populations 1.22138 0.97211 1.01251 0.99554 1.18908 0.91747 0.93266 0.81521 0.94285 1.21174 1.44470 0.94853 0.95988 0.92479 1.25630 0.93630 1.02618 0.94929 1.69981 1.46444 1.37877 1.02534 0.86037 0.79529 0.81168 0.78178 1.19870 1.20420 1.17355 1.45629 1.68214 1.14330 1.07911 1.16172 0.78270 0.85032 0.80830 1.90858 1.58487 1.15490 1.84611 1.42405 1.67170 1.17429 1.05085 1.17716 0.95204 0.92584 0.84826 1.22751 0.98645 0.94717 1.01268 1.23158 0.93920 1.01497 0.85413 1.67702 1.10522 1.07187 1.32230 1.19814 1.03289 0.90947 0.90727 1.20278 0.72205 0.83615 0.84235 1.90903 1.46108 1.16816 1.88014 1.84636 1.81997 1.46275 1.17232 1.21829 1.00680 1.03047 0.89830 0.93159 0.92514 0.94426 0.91993 0.75879 0.73315 0.83412 0.78546 0.70330 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.47 71.98 0.68 -5.09 16 2 C 0.25 10.96 2.20 44.25 0.10 11.06 16 3 H 0.04 1.87 4.50 -2.39 -0.01 1.86 16 4 C -0.53 -26.95 9.05 25.60 0.23 -26.71 16 5 H 0.06 3.12 8.06 -2.91 -0.02 3.09 16 6 C 0.03 1.76 5.47 84.65 0.46 2.22 16 7 N -0.93 -53.69 13.96 21.45 0.30 -53.40 16 8 Si 0.93 42.30 27.31 68.60 1.87 44.18 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.25 -11.08 6.36 99.48 0.63 -10.45 16 12 N -0.71 -25.29 5.07 -461.41 -2.34 -27.63 16 13 C 0.70 23.66 8.39 179.05 1.50 25.17 16 14 O -0.61 -24.97 13.51 -3.96 -0.05 -25.02 16 15 N -0.67 -16.58 5.35 -316.73 -1.69 -18.28 16 16 C 0.20 4.96 6.33 38.45 0.24 5.21 16 17 C -0.15 -3.80 8.78 22.55 0.20 -3.60 16 18 C 0.12 2.55 11.17 84.74 0.95 3.49 16 19 N -0.46 -10.90 10.12 -185.20 -1.87 -12.78 16 20 C 0.09 2.05 6.74 41.82 0.28 2.33 16 21 C 0.55 11.75 8.32 70.44 0.59 12.34 16 22 O -0.53 -12.99 17.11 20.08 0.34 -12.65 16 23 O -0.49 -7.68 13.24 -55.80 -0.74 -8.42 16 24 C -0.13 -2.85 9.58 22.76 0.22 -2.64 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.41 12.33 8.61 -92.71 -0.80 11.53 16 30 H 0.43 7.52 8.84 -92.71 -0.82 6.70 16 31 H 0.15 4.23 6.33 -2.91 -0.02 4.21 16 32 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.43 2.11 9.11 -74.06 -0.67 1.44 16 34 H 0.17 3.08 7.64 -2.91 -0.02 3.06 16 Total: -1.00 -69.84 305.62 0.09 -69.74 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -1.17 Total: 20.48 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 5.45 Total: 23.77 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -5.61 Total: -112.08 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.45 Total: -46.09 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.87 Total: 44.18 kcal Total: -69.84 0.09 -69.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573576879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.343 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds