Wall clock time and date at job start Tue Mar 31 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47084 * 119.99939 * 8 6 4 11 11 H 1.48498 * 109.47582 * 240.00361 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 S 1.65606 * 119.99935 * 119.99548 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46500 * 120.00079 * 64.99962 * 17 14 12 19 19 H 1.08993 * 110.39729 * 337.43843 * 18 17 14 20 20 C 1.54303 * 110.44476 * 214.99822 * 18 17 14 21 21 N 1.48220 * 105.06179 * 240.47991 * 20 18 17 22 22 O 1.47738 * 105.38115 * 24.30531 * 21 20 18 23 23 C 1.44618 * 104.63395 * 319.57322 * 22 21 20 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 27 27 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 29 29 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 30 30 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 31 31 H 0.97004 * 119.99793 * 244.99782 * 17 14 12 32 32 H 1.09002 * 110.32303 * 359.37537 * 20 18 17 33 33 H 1.09002 * 110.32074 * 121.48184 * 20 18 17 34 34 H 1.00899 * 110.99720 * 144.55495 * 21 20 18 35 35 H 1.09000 * 110.52851 * 280.41151 * 23 22 21 36 36 H 1.08998 * 110.53526 * 157.64841 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.5794 1.1830 -1.5749 16 8 3.7119 -0.8787 -2.9814 17 7 1.9607 0.8091 -3.3998 18 6 1.0291 1.8619 -2.9875 19 1 0.8332 1.7980 -1.9172 20 6 -0.2885 1.7578 -3.7838 21 7 -0.4038 3.0461 -4.5076 22 8 0.9788 3.5522 -4.6296 23 6 1.5910 3.2537 -3.3539 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 3.4844 28 1 0.7376 -2.1444 -1.9994 29 1 1.5296 -2.5968 -0.4709 30 1 2.4630 -2.5818 -1.9864 31 1 1.9861 0.5190 -4.3251 32 1 -0.2393 0.9295 -4.4906 33 1 -1.1315 1.6262 -3.1053 34 1 -0.8221 2.9141 -5.4163 35 1 1.2990 3.9924 -2.6076 36 1 2.6760 3.2146 -3.4503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575912354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:32 Heat of formation + Delta-G solvation = -62.880671 kcal Electronic energy + Delta-G solvation = -21556.537750 eV Core-core repulsion = 18204.951732 eV Total energy + Delta-G solvation = -3351.586017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.93084 -36.77102 -36.25590 -35.32114 -34.46036 -32.64305 -31.72524 -29.22519 -28.69042 -25.59618 -25.26657 -24.01830 -21.54717 -20.89973 -19.04960 -17.67276 -17.41637 -16.85333 -16.34639 -16.08407 -15.32985 -14.94535 -14.72723 -14.30754 -13.93984 -13.51654 -13.29551 -12.80889 -12.66646 -12.40172 -12.15226 -12.06732 -11.84578 -11.56934 -11.52130 -11.29669 -11.25087 -10.95819 -10.89164 -10.79318 -10.50844 -10.30402 -10.13102 -9.55688 -9.35537 -8.94279 -8.51772 -8.07751 -6.14140 -4.20594 1.08178 2.96644 3.24192 3.32731 3.34438 3.38236 3.98990 4.34697 4.40370 4.42784 4.78974 4.83603 5.09398 5.17876 5.30535 5.46560 5.53765 5.67088 5.78283 5.97446 6.05341 6.27269 6.49993 6.56089 6.59363 6.65665 6.74565 6.89573 6.99639 7.38031 7.53796 7.70684 7.96320 8.19278 8.81570 9.45672 10.91646 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.006371 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.604566 B = 4394.138645 C = 4910.775675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.265 3.735 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.097 3.903 14 S 2.777 3.223 15 O -0.970 6.970 16 O -0.995 6.995 17 N -1.127 6.127 18 C 0.125 3.875 19 H 0.119 0.881 20 C 0.001 3.999 21 N -0.489 5.489 22 O -0.245 6.245 23 C 0.035 3.965 24 H 0.034 0.966 25 H 0.094 0.906 26 H 0.009 0.991 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.409 0.591 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.351 0.649 35 H 0.082 0.918 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 0.121 -11.625 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.162 3.838 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.049 4.049 14 S 2.785 3.215 15 O -0.953 6.953 16 O -0.979 6.979 17 N -0.884 5.884 18 C 0.015 3.985 19 H 0.137 0.863 20 C -0.131 4.131 21 N -0.158 5.158 22 O -0.254 6.254 23 C -0.045 4.045 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.242 0.758 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.316 0.898 -10.912 11.440 hybrid contribution 0.074 -1.421 -0.088 1.425 sum -3.242 -0.522 -11.000 11.480 Atomic orbital electron populations 1.22183 0.98183 1.00008 1.00496 1.18794 0.91293 0.93021 0.80722 0.92350 1.21338 1.31668 1.13111 0.89954 0.91812 1.24903 0.94886 0.94996 0.99040 1.69851 1.36441 1.22648 1.23815 0.86434 0.78619 0.79676 0.82643 1.19739 1.20858 1.20966 1.57667 1.69963 1.20014 1.35529 1.21298 0.98736 0.82164 1.02712 1.02095 0.73583 0.73252 0.72547 1.93615 1.73672 1.55799 1.72261 1.93543 1.69580 1.59998 1.74759 1.56463 1.56798 1.50960 1.24183 1.22286 0.87616 0.87313 1.01247 0.86344 1.23755 0.98999 0.91659 0.98651 1.69238 0.99764 1.24525 1.22238 1.91736 1.19727 1.79909 1.34048 1.24032 0.98798 0.95168 0.86497 0.94635 0.88734 0.97189 0.92660 0.94446 0.89729 0.91947 0.75804 0.91762 0.86884 0.83460 0.89961 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.86 37.16 0.33 -2.79 16 2 C 0.26 6.06 1.95 -69.08 -0.13 5.92 16 3 H 0.06 1.48 6.72 -51.93 -0.35 1.13 16 4 C -0.52 -13.47 7.99 -34.44 -0.28 -13.74 16 5 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.99 -19.27 3.12 -115.84 -0.36 -19.63 16 13 C 0.10 1.64 9.65 59.85 0.58 2.22 16 14 S 2.78 51.46 6.06 -107.50 -0.65 50.81 16 15 O -0.97 -21.39 16.46 -57.18 -0.94 -22.33 16 16 O -0.99 -19.86 16.74 -57.18 -0.96 -20.82 16 17 N -1.13 -15.75 5.51 -3.64 -0.02 -15.77 16 18 C 0.12 1.72 3.67 -66.46 -0.24 1.47 16 19 H 0.12 1.82 5.67 -51.93 -0.29 1.52 16 20 C 0.00 0.01 7.59 -2.41 -0.02 -0.01 16 21 N -0.49 -5.63 8.43 -8.94 -0.08 -5.70 16 22 O -0.24 -3.42 12.76 -14.75 -0.19 -3.60 16 23 C 0.03 0.49 7.63 37.95 0.29 0.78 16 24 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 25 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 26 H 0.01 0.16 6.85 -51.93 -0.36 -0.19 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 30 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 31 H 0.41 4.75 8.70 -34.47 -0.30 4.45 16 32 H 0.06 0.61 7.80 -51.93 -0.41 0.20 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.35 3.11 9.09 -39.29 -0.36 2.75 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.50 8.06 -51.93 -0.42 1.08 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -31.13 304.64 -7.28 -38.40 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.71 Total: 6.22 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.43 Total: -4.56 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.17 Total: -64.27 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -2.09 Total: -46.75 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 51.46 SS G_CDS: -0.65 Total: 50.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.13 -7.28 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.476 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds