Wall clock time and date at job start Tue Mar 31 2020 00:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47084 * 119.99939 * 8 6 4 11 11 H 1.48498 * 109.47582 * 240.00361 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 S 1.65606 * 119.99935 * 119.99548 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46500 * 120.00079 * 64.99962 * 17 14 12 19 19 H 1.08993 * 110.39729 * 337.43843 * 18 17 14 20 20 C 1.54303 * 110.44476 * 214.99822 * 18 17 14 21 21 N 1.48220 * 105.06179 * 240.47991 * 20 18 17 22 22 O 1.47738 * 105.38115 * 24.30531 * 21 20 18 23 23 C 1.44618 * 104.63395 * 319.57322 * 22 21 20 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 27 27 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 29 29 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 30 30 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 31 31 H 0.97004 * 119.99793 * 244.99782 * 17 14 12 32 32 H 1.09002 * 110.32303 * 359.37537 * 20 18 17 33 33 H 1.09002 * 110.32074 * 121.48184 * 20 18 17 34 34 H 1.00899 * 110.99720 * 144.55495 * 21 20 18 35 35 H 1.09000 * 110.52851 * 280.41151 * 23 22 21 36 36 H 1.08998 * 110.53526 * 157.64841 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.5794 1.1830 -1.5749 16 8 3.7119 -0.8787 -2.9814 17 7 1.9607 0.8091 -3.3998 18 6 1.0291 1.8619 -2.9875 19 1 0.8332 1.7980 -1.9172 20 6 -0.2885 1.7578 -3.7838 21 7 -0.4038 3.0461 -4.5076 22 8 0.9788 3.5522 -4.6296 23 6 1.5910 3.2537 -3.3539 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 3.4844 28 1 0.7376 -2.1444 -1.9994 29 1 1.5296 -2.5968 -0.4709 30 1 2.4630 -2.5818 -1.9864 31 1 1.9861 0.5190 -4.3251 32 1 -0.2393 0.9295 -4.4906 33 1 -1.1315 1.6262 -3.1053 34 1 -0.8221 2.9141 -5.4163 35 1 1.2990 3.9924 -2.6076 36 1 2.6760 3.2146 -3.4503 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575912354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:31 Heat of formation + Delta-G solvation = -89.264011 kcal Electronic energy + Delta-G solvation = -21557.681817 eV Core-core repulsion = 18204.951732 eV Total energy + Delta-G solvation = -3352.730085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97088 -38.35620 -37.89314 -36.92515 -35.60930 -34.51072 -32.69269 -30.92148 -29.81536 -27.22686 -27.01056 -25.00695 -22.66051 -22.57287 -20.46838 -19.05091 -18.70101 -18.37799 -18.07880 -17.25067 -16.91729 -16.32097 -15.98122 -15.56382 -15.25451 -14.96473 -14.79329 -14.37985 -13.81207 -13.65099 -13.55452 -13.44082 -13.29877 -13.18036 -13.13873 -13.00352 -12.73911 -12.61075 -12.41729 -12.20713 -12.09913 -11.91478 -11.87050 -11.15075 -10.71430 -10.47692 -9.88760 -9.67638 -8.11149 -6.23453 -0.39855 1.41895 1.45914 1.55077 1.94686 2.00933 2.43648 2.57583 3.17912 3.34484 3.38407 3.44621 3.80729 4.01965 4.10405 4.25968 4.43579 4.64388 4.70024 4.77294 4.78788 4.91475 5.03481 5.07024 5.16082 5.26814 5.47748 5.63436 5.67659 5.85531 5.88750 6.02880 6.16976 6.32491 6.83811 7.45350 8.92859 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022582 B = 0.006371 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.604566 B = 4394.138645 C = 4910.775675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.029 0.971 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.995 5.995 13 C 0.092 3.908 14 S 2.795 3.205 15 O -1.010 7.010 16 O -1.009 7.009 17 N -1.106 6.106 18 C 0.119 3.881 19 H 0.103 0.897 20 C 0.007 3.993 21 N -0.488 5.488 22 O -0.261 6.261 23 C 0.033 3.967 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.424 0.576 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.367 0.633 35 H 0.081 0.919 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -0.681 -12.801 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.047 0.953 4 C -0.578 4.578 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.837 5.837 13 C -0.053 4.053 14 S 2.804 3.196 15 O -0.993 6.993 16 O -0.993 6.993 17 N -0.868 5.868 18 C 0.010 3.990 19 H 0.120 0.880 20 C -0.124 4.124 21 N -0.160 5.160 22 O -0.269 6.269 23 C -0.047 4.047 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.260 0.740 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.184 0.816 35 H 0.099 0.901 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.457 0.073 -12.120 12.913 hybrid contribution 0.414 -1.155 0.192 1.242 sum -4.043 -1.082 -11.928 12.641 Atomic orbital electron populations 1.21967 0.96477 1.00412 1.00768 1.18475 0.92451 0.91410 0.81001 0.95290 1.21674 1.31572 1.13047 0.91538 0.92633 1.25563 0.95248 0.95708 1.01449 1.69956 1.37172 1.23520 1.24270 0.85611 0.78243 0.78598 0.79780 1.19609 1.21194 1.20067 1.57532 1.69994 1.21158 1.35020 1.21472 1.00618 0.80525 1.02686 1.01309 0.73432 0.72491 0.72386 1.93566 1.75020 1.57165 1.73590 1.93517 1.70357 1.60540 1.74882 1.55926 1.56231 1.50534 1.24114 1.22365 0.88875 0.86826 1.00919 0.87956 1.23791 0.97486 0.92189 0.98963 1.69226 0.98151 1.24984 1.23646 1.91720 1.21145 1.80347 1.33688 1.23971 0.98579 0.95399 0.86766 0.94008 0.91485 0.93870 0.92646 0.91108 0.90973 0.91227 0.73962 0.89371 0.85571 0.81616 0.90098 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 8.86 71.98 0.64 -4.92 16 2 C 0.27 12.38 1.95 44.25 0.09 12.47 16 3 H 0.03 1.51 6.72 -2.39 -0.02 1.49 16 4 C -0.54 -28.01 7.99 25.60 0.20 -27.81 16 5 H 0.06 2.90 7.33 -2.91 -0.02 2.88 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -49.15 11.32 21.45 0.24 -48.91 16 8 Si 0.95 42.26 29.54 68.60 2.03 44.28 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.99 -37.82 3.12 -520.42 -1.62 -39.45 16 13 C 0.09 2.94 9.65 127.77 1.23 4.18 16 14 S 2.79 101.58 6.06 -56.49 -0.34 101.24 16 15 O -1.01 -45.17 16.46 -128.00 -2.11 -47.28 16 16 O -1.01 -39.07 16.74 -128.00 -2.14 -41.21 16 17 N -1.11 -28.87 5.51 -165.43 -0.91 -29.79 16 18 C 0.12 3.08 3.67 45.94 0.17 3.25 16 19 H 0.10 3.04 5.67 -2.39 -0.01 3.02 16 20 C 0.01 0.13 7.59 86.49 0.66 0.79 16 21 N -0.49 -9.92 8.43 -182.21 -1.54 -11.46 16 22 O -0.26 -6.85 12.76 -54.01 -0.69 -7.54 16 23 C 0.03 0.90 7.63 72.49 0.55 1.45 16 24 H 0.04 1.60 7.67 -2.39 -0.02 1.59 16 25 H 0.07 3.14 6.07 -2.39 -0.01 3.12 16 26 H 0.04 1.42 6.85 -2.39 -0.02 1.40 16 27 H 0.26 13.61 8.31 -92.70 -0.77 12.84 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.48 7.02 -2.39 -0.02 2.46 16 30 H 0.07 2.10 7.02 -2.38 -0.02 2.09 16 31 H 0.42 8.70 8.70 -96.74 -0.84 7.86 16 32 H 0.09 1.27 7.80 -2.39 -0.02 1.25 16 33 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.37 5.34 9.09 -89.69 -0.82 4.53 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.79 8.06 -2.39 -0.02 2.77 16 Total: -1.00 -66.49 304.64 -3.63 -70.12 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.54 Total: 19.06 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 3.99 Total: -9.07 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -3.83 Total: -129.60 kcal Atomic # 8 Polarization: -91.09 SS G_CDS: -4.94 Total: -96.03 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 101.58 SS G_CDS: -0.34 Total: 101.24 kcal Total: -66.49 -3.63 -70.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575912354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.145 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds