Wall clock time and date at job start Tue Mar 31 2020 00:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46950 * 2 1 4 4 C 1.46503 * 119.99818 * 279.98576 * 3 2 1 5 5 C 1.50702 * 109.47061 * 274.99989 * 4 3 2 6 6 H 1.07997 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00313 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99754 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46472 * 90.00676 * 9 7 5 11 11 H 1.48495 * 109.47097 * 210.00161 * 9 7 5 12 12 H 1.48493 * 109.46981 * 330.00837 * 9 7 5 13 13 S 1.65598 * 120.00136 * 99.98602 * 3 2 1 14 14 O 1.42105 * 106.40566 * 150.32003 * 13 3 2 15 15 O 1.42098 * 106.40305 * 17.40103 * 13 3 2 16 16 N 1.65603 * 107.21876 * 263.86094 * 13 3 2 17 17 C 1.46494 * 119.99877 * 69.69129 * 16 13 3 18 18 H 1.08999 * 110.39877 * 6.81788 * 17 16 13 19 19 C 1.54308 * 110.44665 * 129.25388 * 17 16 13 20 20 N 1.48219 * 105.05815 * 118.06705 * 19 17 16 21 21 O 1.47745 * 105.38321 * 24.30881 * 20 19 17 22 22 C 1.44946 * 104.64540 * 319.53458 * 21 20 19 23 23 H 1.09000 * 109.46866 * 51.32636 * 1 2 3 24 24 H 1.09002 * 109.46448 * 171.32523 * 1 2 3 25 25 H 1.08989 * 109.47034 * 291.32376 * 1 2 3 26 26 H 1.08999 * 109.47404 * 239.99616 * 2 1 3 27 27 H 1.09004 * 109.46957 * 119.99666 * 2 1 3 28 28 H 1.08992 * 109.47169 * 35.00019 * 4 3 2 29 29 H 1.09001 * 109.46886 * 155.00193 * 4 3 2 30 30 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99868 * 249.68758 * 16 13 3 32 32 H 1.08997 * 110.32379 * 236.96086 * 19 17 16 33 33 H 1.09003 * 110.32330 * 359.07236 * 19 17 16 34 34 H 1.00903 * 110.99855 * 144.55206 * 20 19 17 35 35 H 1.08991 * 110.58198 * 280.49761 * 22 21 20 36 36 H 1.09001 * 110.62820 * 157.62868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0550 2.1451 -1.2496 5 6 3.3360 1.8449 -1.9844 6 1 4.0514 1.1545 -1.5626 7 6 3.5952 2.4524 -3.1946 8 7 4.7133 2.1908 -3.8357 9 14 2.3580 3.6472 -3.9238 10 1 2.6600 5.0222 -3.4510 11 1 2.4421 3.6038 -5.4058 12 1 0.9888 3.2655 -3.4942 13 16 2.5288 2.0790 1.4124 14 8 3.5243 3.0278 1.0544 15 8 2.7619 1.0146 2.3245 16 7 1.2545 2.9448 2.0199 17 6 0.0810 2.2465 2.5501 18 1 0.2597 1.1717 2.5799 19 6 -0.2699 2.7738 3.9573 20 7 -1.6287 3.3507 3.8245 21 8 -2.2367 2.6599 2.6687 22 6 -1.1668 2.5627 1.6956 23 1 -0.3633 0.6422 -0.8023 24 1 -0.3632 -1.0160 -0.1550 25 1 -0.3633 0.3737 0.9572 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.2051 1.8651 -1.8717 29 1 2.0059 3.2107 -1.0255 30 1 4.8954 2.6180 -4.6873 31 1 1.2853 3.9143 2.0247 32 1 -0.2746 1.9558 4.6777 33 1 0.4411 3.5418 4.2619 34 1 -2.1697 3.1981 4.6625 35 1 -1.0403 3.5089 1.1696 36 1 -1.3616 1.7550 0.9901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577710905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:19 Heat of formation + Delta-G solvation = -58.790065 kcal Electronic energy + Delta-G solvation = -21473.703942 eV Core-core repulsion = 18122.295307 eV Total energy + Delta-G solvation = -3351.408635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.10079 -36.82213 -36.29312 -35.34710 -34.72607 -32.64075 -31.85997 -30.41645 -28.78020 -27.24416 -24.29365 -23.01376 -21.76527 -21.61178 -19.20479 -17.92197 -17.35852 -16.98852 -16.69024 -16.39574 -15.56926 -15.42289 -14.36393 -14.27066 -14.16894 -13.83202 -13.47792 -13.15968 -12.84443 -12.73337 -12.55798 -12.44580 -12.04969 -11.92039 -11.67798 -11.55666 -11.39568 -11.20214 -10.97840 -10.77552 -10.57047 -10.45536 -10.25607 -9.66665 -9.55280 -9.16744 -8.62504 -8.23335 -6.10985 -4.10503 1.00215 2.79443 3.20827 3.25867 3.29105 3.33378 3.88707 4.23015 4.26740 4.34994 4.62458 4.63294 4.85882 5.05376 5.17295 5.23740 5.29542 5.36101 5.50474 5.52978 5.56775 5.76764 5.86499 6.12833 6.29406 6.37574 6.43413 6.45583 6.66646 6.89486 7.04668 7.33983 7.53988 8.45654 8.94329 9.47726 11.02595 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.006402 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469879 B = 4372.657667 C = 4692.228619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.114 3.886 3 N -0.985 5.985 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.777 3.223 14 O -0.955 6.955 15 O -0.992 6.992 16 N -1.122 6.122 17 C 0.127 3.873 18 H 0.109 0.891 19 C -0.005 4.005 20 N -0.489 5.489 21 O -0.243 6.243 22 C 0.027 3.973 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.417 0.583 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.353 0.647 35 H 0.080 0.920 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 -0.628 12.914 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.013 4.013 3 N -0.826 5.826 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.785 3.215 14 O -0.939 6.939 15 O -0.976 6.976 16 N -0.880 5.880 17 C 0.017 3.983 18 H 0.127 0.873 19 C -0.137 4.137 20 N -0.158 5.158 21 O -0.252 6.252 22 C -0.053 4.053 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.098 0.902 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.377 -0.315 12.766 17.784 hybrid contribution -0.848 0.264 -0.293 0.935 sum -13.225 -0.051 12.473 18.179 Atomic orbital electron populations 1.22513 0.97456 1.02419 1.01599 1.21220 0.92960 0.82908 1.04182 1.57511 1.80504 1.21175 1.23402 1.19406 0.98578 0.90074 0.81395 1.21353 1.03288 1.27828 1.04547 0.90373 1.24868 0.95207 0.96189 0.96680 1.69890 1.24069 1.43441 1.15839 0.86942 0.82152 0.82317 0.78810 1.19854 1.20954 1.18941 1.02166 0.73192 0.73312 0.72875 1.93677 1.54366 1.62708 1.83125 1.93537 1.84385 1.56200 1.63454 1.56414 1.34223 1.19471 1.77918 1.22191 0.86662 0.97742 0.91695 0.87283 1.23815 0.92054 1.00581 0.97212 1.69202 1.00693 1.43386 1.02483 1.91812 1.29872 1.80491 1.22998 1.24288 0.85807 1.03499 0.91706 0.91619 0.91607 0.93214 0.89324 0.90000 0.94715 0.95607 0.92503 0.74914 0.91554 0.87141 0.83214 0.90205 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.41 37.16 0.35 -1.83 16 2 C 0.11 1.78 6.42 -4.04 -0.03 1.75 16 3 N -0.98 -18.41 2.84 -115.66 -0.33 -18.74 16 4 C 0.23 5.07 4.11 -5.19 -0.02 5.05 16 5 C -0.53 -14.68 9.94 -34.44 -0.34 -15.02 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 9 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 13 S 2.78 50.27 6.06 -107.50 -0.65 49.62 16 14 O -0.96 -21.60 17.34 -57.17 -0.99 -22.59 16 15 O -0.99 -18.87 15.85 -57.17 -0.91 -19.78 16 16 N -1.12 -14.69 5.40 -3.64 -0.02 -14.71 16 17 C 0.13 1.44 3.29 -66.46 -0.22 1.23 16 18 H 0.11 1.22 6.18 -51.93 -0.32 0.90 16 19 C 0.00 -0.05 7.62 -2.41 -0.02 -0.06 16 20 N -0.49 -4.86 8.43 -8.94 -0.08 -4.93 16 21 O -0.24 -2.92 12.77 -14.76 -0.19 -3.11 16 22 C 0.03 0.30 7.39 37.95 0.28 0.58 16 23 H 0.06 0.82 7.59 -51.93 -0.39 0.43 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.53 3.83 -51.94 -0.20 0.33 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.22 6.78 -51.93 -0.35 0.87 16 28 H 0.03 0.73 6.64 -51.93 -0.34 0.38 16 29 H 0.03 0.57 7.21 -51.93 -0.37 0.20 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.42 4.79 8.96 -34.47 -0.31 4.48 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.98 7.95 -51.93 -0.41 0.57 16 34 H 0.35 2.63 9.09 -39.29 -0.36 2.27 16 35 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 36 H 0.11 1.15 5.46 -51.93 -0.28 0.87 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -34.57 303.03 -7.21 -41.78 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.62 Total: 4.65 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.09 Total: -6.33 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 0.35 Total: -64.74 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -2.09 Total: -45.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.65 Total: 49.62 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.57 -7.21 -41.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.014 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds