Wall clock time and date at job start Tue Mar 31 2020 00:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46950 * 2 1 4 4 C 1.46503 * 119.99818 * 279.98576 * 3 2 1 5 5 C 1.50702 * 109.47061 * 274.99989 * 4 3 2 6 6 H 1.07997 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00313 * 179.97438 * 7 5 4 9 9 Si 1.86810 * 119.99754 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46472 * 90.00676 * 9 7 5 11 11 H 1.48495 * 109.47097 * 210.00161 * 9 7 5 12 12 H 1.48493 * 109.46981 * 330.00837 * 9 7 5 13 13 S 1.65598 * 120.00136 * 99.98602 * 3 2 1 14 14 O 1.42105 * 106.40566 * 150.32003 * 13 3 2 15 15 O 1.42098 * 106.40305 * 17.40103 * 13 3 2 16 16 N 1.65603 * 107.21876 * 263.86094 * 13 3 2 17 17 C 1.46494 * 119.99877 * 69.69129 * 16 13 3 18 18 H 1.08999 * 110.39877 * 6.81788 * 17 16 13 19 19 C 1.54308 * 110.44665 * 129.25388 * 17 16 13 20 20 N 1.48219 * 105.05815 * 118.06705 * 19 17 16 21 21 O 1.47745 * 105.38321 * 24.30881 * 20 19 17 22 22 C 1.44946 * 104.64540 * 319.53458 * 21 20 19 23 23 H 1.09000 * 109.46866 * 51.32636 * 1 2 3 24 24 H 1.09002 * 109.46448 * 171.32523 * 1 2 3 25 25 H 1.08989 * 109.47034 * 291.32376 * 1 2 3 26 26 H 1.08999 * 109.47404 * 239.99616 * 2 1 3 27 27 H 1.09004 * 109.46957 * 119.99666 * 2 1 3 28 28 H 1.08992 * 109.47169 * 35.00019 * 4 3 2 29 29 H 1.09001 * 109.46886 * 155.00193 * 4 3 2 30 30 H 0.96996 * 119.99923 * 179.97438 * 8 7 5 31 31 H 0.96995 * 119.99868 * 249.68758 * 16 13 3 32 32 H 1.08997 * 110.32379 * 236.96086 * 19 17 16 33 33 H 1.09003 * 110.32330 * 359.07236 * 19 17 16 34 34 H 1.00903 * 110.99855 * 144.55206 * 20 19 17 35 35 H 1.08991 * 110.58198 * 280.49761 * 22 21 20 36 36 H 1.09001 * 110.62820 * 157.62868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0550 2.1451 -1.2496 5 6 3.3360 1.8449 -1.9844 6 1 4.0514 1.1545 -1.5626 7 6 3.5952 2.4524 -3.1946 8 7 4.7133 2.1908 -3.8357 9 14 2.3580 3.6472 -3.9238 10 1 2.6600 5.0222 -3.4510 11 1 2.4421 3.6038 -5.4058 12 1 0.9888 3.2655 -3.4942 13 16 2.5288 2.0790 1.4124 14 8 3.5243 3.0278 1.0544 15 8 2.7619 1.0146 2.3245 16 7 1.2545 2.9448 2.0199 17 6 0.0810 2.2465 2.5501 18 1 0.2597 1.1717 2.5799 19 6 -0.2699 2.7738 3.9573 20 7 -1.6287 3.3507 3.8245 21 8 -2.2367 2.6599 2.6687 22 6 -1.1668 2.5627 1.6956 23 1 -0.3633 0.6422 -0.8023 24 1 -0.3632 -1.0160 -0.1550 25 1 -0.3633 0.3737 0.9572 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.2051 1.8651 -1.8717 29 1 2.0059 3.2107 -1.0255 30 1 4.8954 2.6180 -4.6873 31 1 1.2853 3.9143 2.0247 32 1 -0.2746 1.9558 4.6777 33 1 0.4411 3.5418 4.2619 34 1 -2.1697 3.1981 4.6625 35 1 -1.0403 3.5089 1.1696 36 1 -1.3616 1.7550 0.9901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577710905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:18 Heat of formation + Delta-G solvation = -89.568426 kcal Electronic energy + Delta-G solvation = -21475.038592 eV Core-core repulsion = 18122.295307 eV Total energy + Delta-G solvation = -3352.743285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.95673 -38.35790 -37.78257 -36.92589 -35.73584 -34.66331 -32.66870 -31.85233 -29.77053 -28.93957 -25.15543 -24.56857 -23.15810 -22.61286 -20.50401 -19.28010 -18.88720 -18.52821 -18.08667 -17.48244 -16.94480 -16.35694 -16.12679 -15.53805 -15.23946 -14.94790 -14.58217 -14.54772 -14.32885 -13.91050 -13.75051 -13.57210 -13.41085 -13.33795 -13.23045 -13.11748 -12.76909 -12.69230 -12.37989 -12.18945 -12.06693 -11.75767 -11.67920 -11.51619 -10.76784 -10.67811 -9.92494 -9.81000 -8.26788 -6.32203 -0.43189 1.38446 1.41816 1.50067 1.92099 2.01600 2.36752 2.53946 3.07277 3.31866 3.39470 3.46342 3.78997 3.87877 3.94280 4.22951 4.38369 4.41581 4.47063 4.56870 4.63919 4.75670 4.87735 4.93218 5.03122 5.08373 5.37695 5.45323 5.48348 5.51093 5.73320 5.84852 6.01688 6.33156 6.71546 7.30576 8.90927 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.006402 C = 0.005966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469879 B = 4372.657667 C = 4692.228619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.991 5.991 4 C 0.237 3.763 5 C -0.540 4.540 6 H 0.027 0.973 7 C 0.006 3.994 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.225 1.225 13 S 2.794 3.206 14 O -1.007 7.007 15 O -1.004 7.004 16 N -1.104 6.104 17 C 0.119 3.881 18 H 0.113 0.887 19 C -0.004 4.004 20 N -0.490 5.490 21 O -0.259 6.259 22 C 0.028 3.972 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.427 0.573 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.367 0.633 35 H 0.077 0.923 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.513 0.018 13.850 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.020 4.020 3 N -0.832 5.832 4 C 0.112 3.888 5 C -0.579 4.579 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.591 5.591 9 Si 0.763 3.237 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.147 1.147 13 S 2.802 3.198 14 O -0.991 6.991 15 O -0.988 6.988 16 N -0.866 5.866 17 C 0.010 3.990 18 H 0.131 0.869 19 C -0.136 4.136 20 N -0.161 5.161 21 O -0.267 6.267 22 C -0.052 4.052 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.183 0.817 35 H 0.096 0.904 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.622 0.302 13.736 20.805 hybrid contribution 0.206 -0.017 -0.449 0.494 sum -15.416 0.285 13.288 20.354 Atomic orbital electron populations 1.22448 0.94038 1.04080 1.02578 1.21431 0.95785 0.81234 1.03584 1.57438 1.80960 1.22346 1.22438 1.19176 0.96219 0.90944 0.82478 1.21717 1.04657 1.26485 1.05035 0.95454 1.25933 0.97511 0.98470 0.97251 1.70076 1.26887 1.45511 1.16629 0.85818 0.81024 0.79129 0.77684 1.19537 1.20837 1.14726 1.01389 0.73189 0.72637 0.72598 1.93608 1.57390 1.64143 1.83920 1.93513 1.84924 1.56772 1.63553 1.55875 1.33785 1.19750 1.77202 1.22444 0.85748 0.97884 0.92921 0.86911 1.23856 0.91955 1.01496 0.96290 1.69187 1.00956 1.43298 1.02708 1.91801 1.30455 1.80687 1.23772 1.24292 0.85403 1.03798 0.91704 0.91599 0.89321 0.91556 0.91121 0.89575 0.92352 0.94741 0.92474 0.73662 0.89714 0.86384 0.81651 0.90430 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 9.41 71.98 0.68 -2.96 16 2 C 0.10 3.18 6.42 86.38 0.55 3.73 16 3 N -0.99 -36.29 2.84 -519.84 -1.48 -37.77 16 4 C 0.24 10.20 4.11 85.63 0.35 10.56 16 5 C -0.54 -30.57 9.94 25.60 0.25 -30.31 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 7 C 0.01 0.33 5.47 84.65 0.46 0.80 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.94 41.73 27.47 68.60 1.88 43.62 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.22 -8.46 6.54 99.48 0.65 -7.81 16 13 S 2.79 99.41 6.06 -56.49 -0.34 99.07 16 14 O -1.01 -46.14 17.34 -128.00 -2.22 -48.36 16 15 O -1.00 -37.45 15.85 -128.00 -2.03 -39.48 16 16 N -1.10 -26.55 5.40 -165.43 -0.89 -27.45 16 17 C 0.12 2.35 3.29 45.95 0.15 2.51 16 18 H 0.11 2.17 6.18 -2.39 -0.01 2.16 16 19 C 0.00 -0.07 7.62 86.49 0.66 0.59 16 20 N -0.49 -8.21 8.43 -182.21 -1.54 -9.75 16 21 O -0.26 -5.42 12.77 -54.02 -0.69 -6.11 16 22 C 0.03 0.53 7.39 72.49 0.54 1.07 16 23 H 0.06 1.41 7.59 -2.39 -0.02 1.39 16 24 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.17 3.83 -2.39 -0.01 1.16 16 26 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.09 2.50 6.78 -2.39 -0.02 2.49 16 28 H 0.06 2.27 6.64 -2.39 -0.02 2.25 16 29 H 0.03 1.45 7.21 -2.39 -0.02 1.43 16 30 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 31 H 0.43 8.89 8.96 -96.75 -0.87 8.02 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.72 7.95 -2.39 -0.02 1.70 16 34 H 0.37 4.32 9.09 -89.69 -0.82 3.51 16 35 H 0.08 1.54 8.06 -2.39 -0.02 1.52 16 36 H 0.12 2.06 5.46 -2.39 -0.01 2.05 16 Total: -1.00 -77.29 303.03 -3.96 -81.26 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.61 Total: 18.49 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 3.65 Total: -14.03 kcal Atomic # 7 Polarization: -130.85 SS G_CDS: -3.61 Total: -134.45 kcal Atomic # 8 Polarization: -89.02 SS G_CDS: -4.94 Total: -93.96 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.62 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -0.34 Total: 99.07 kcal Total: -77.29 -3.96 -81.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577710905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.310 kcal (2) G-P(sol) polarization free energy of solvation -77.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds