Wall clock time and date at job start Tue Mar 31 2020 00:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99991 * 2 1 3 5 5 O 1.21299 * 120.00028 * 253.75698 * 4 2 1 6 6 N 1.34777 * 120.00380 * 73.76057 * 4 2 1 7 7 C 1.37090 * 119.99611 * 2.94049 * 6 4 2 8 8 H 1.08000 * 120.00500 * 343.87805 * 7 6 4 9 9 C 1.38951 * 119.99832 * 163.88113 * 7 6 4 10 10 N 1.31414 * 119.99824 * 346.87872 * 9 7 6 11 11 Si 1.86800 * 120.00284 * 166.87734 * 9 7 6 12 12 H 1.48506 * 109.47133 * 59.99653 * 11 9 7 13 13 H 1.48500 * 109.47674 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47192 * 300.00211 * 11 9 7 15 15 C 1.46501 * 119.99890 * 182.94231 * 6 4 2 16 16 C 1.50695 * 109.47011 * 277.54065 * 15 6 4 17 17 O 1.20822 * 120.00353 * 0.02562 * 16 15 6 18 18 O 1.34234 * 119.99944 * 180.02562 * 16 15 6 19 19 C 1.50701 * 109.47172 * 119.99777 * 2 1 3 20 20 C 1.38383 * 120.00072 * 34.97619 * 19 2 1 21 21 N 1.32133 * 119.99790 * 179.76806 * 20 19 2 22 22 C 1.32148 * 119.99504 * 0.51151 * 21 20 19 23 23 C 1.38337 * 120.00543 * 359.49068 * 22 21 20 24 24 N 1.32132 * 119.99853 * 215.00236 * 19 2 1 25 25 H 1.09002 * 109.46957 * 173.72976 * 1 2 3 26 26 H 1.09000 * 109.47766 * 293.73085 * 1 2 3 27 27 H 1.09009 * 109.47393 * 53.73181 * 1 2 3 28 28 H 0.97003 * 119.99570 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47162 * 37.54716 * 15 6 4 30 30 H 1.09008 * 109.46567 * 157.54235 * 15 6 4 31 31 H 0.96693 * 117.00197 * 180.02562 * 18 16 15 32 32 H 1.08002 * 120.00537 * 0.02750 * 20 19 2 33 33 H 1.07998 * 119.99491 * 179.76799 * 22 21 20 34 34 H 1.08000 * 120.00175 * 180.23238 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5115 -1.8207 -1.1365 6 7 1.9492 -0.1120 -2.4352 7 6 1.4635 1.1661 -2.5337 8 1 0.9119 1.5990 -1.7122 9 6 1.6808 1.9047 -3.6904 10 7 2.5572 1.4922 -4.5785 11 14 0.7271 3.4841 -3.9831 12 1 1.0103 4.4440 -2.8860 13 1 1.1402 4.0789 -5.2795 14 1 -0.7272 3.1853 -4.0161 15 6 2.3780 -0.8276 -3.6396 16 6 3.8734 -0.7132 -3.7862 17 8 4.5153 -0.0976 -2.9684 18 8 4.4924 -1.2953 -4.8254 19 6 2.0323 -0.7104 1.2305 20 6 1.3371 -1.7951 1.7355 21 7 1.7801 -2.4208 2.8117 22 6 2.8815 -2.0043 3.4116 23 6 3.5764 -0.9198 2.9068 24 7 3.1362 -0.2971 1.8275 25 1 -0.3633 -1.0215 -0.1122 26 1 -0.3634 0.4136 0.9407 27 1 -0.3634 0.6080 -0.8286 28 1 2.7091 2.0081 -5.3858 29 1 2.1003 -1.8783 -3.5561 30 1 1.8928 -0.3919 -4.5131 31 1 5.4527 -1.1948 -4.8767 32 1 0.4348 -2.1330 1.2476 33 1 3.2415 -2.5133 4.2934 34 1 4.4785 -0.5818 3.3949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:24 Heat of formation + Delta-G solvation = -63.360037 kcal Electronic energy + Delta-G solvation = -22259.665785 eV Core-core repulsion = 18772.615030 eV Total energy + Delta-G solvation = -3487.050755 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87545 -39.38425 -38.23037 -35.30724 -34.60653 -34.29564 -33.45425 -31.63376 -29.88992 -27.74836 -25.28951 -24.64002 -24.13323 -22.45195 -20.65427 -19.23487 -17.43242 -17.31287 -16.92495 -16.70702 -16.22186 -15.53206 -15.28605 -14.63668 -14.40973 -14.32830 -14.08095 -13.63194 -13.59083 -12.87971 -12.53417 -12.11953 -11.81476 -11.62451 -11.43272 -11.39580 -11.29212 -10.93363 -10.90279 -10.82919 -10.52861 -10.44226 -10.27677 -9.68907 -9.09114 -9.02860 -8.73245 -8.56779 -8.06271 -6.53836 -4.09537 1.09144 1.46708 3.04679 3.13565 3.15197 3.53418 3.68315 3.89506 4.02506 4.22924 4.32210 4.53914 4.73366 4.82874 4.98060 5.04513 5.42910 5.45939 5.64407 5.70401 5.79071 5.96709 6.16852 6.33555 6.40305 6.52681 6.61270 6.65165 6.78225 7.25699 7.49765 7.58613 7.61684 8.11132 8.15700 8.89276 9.14645 9.27370 9.66240 10.50753 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.006525 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.214664 B = 4290.084871 C = 5166.210283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 H 0.114 0.886 4 C 0.482 3.518 5 O -0.597 6.597 6 N -0.425 5.425 7 C -0.332 4.332 8 H 0.109 0.891 9 C 0.035 3.965 10 N -0.879 5.879 11 Si 0.931 3.069 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.153 3.847 16 C 0.498 3.502 17 O -0.514 6.514 18 O -0.534 6.534 19 C 0.126 3.874 20 C 0.067 3.933 21 N -0.442 5.442 22 C 0.029 3.971 23 C 0.049 3.951 24 N -0.433 5.433 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.274 0.726 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.390 0.610 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 -2.005 6.122 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 H 0.132 0.868 4 C 0.271 3.729 5 O -0.483 6.483 6 N -0.144 5.144 7 C -0.459 4.459 8 H 0.127 0.873 9 C -0.169 4.169 10 N -0.518 5.518 11 Si 0.757 3.243 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.028 3.972 16 C 0.339 3.661 17 O -0.400 6.400 18 O -0.345 6.345 19 C -0.015 4.015 20 C -0.093 4.093 21 N -0.156 5.156 22 C -0.130 4.130 23 C -0.111 4.111 24 N -0.148 5.148 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.246 0.754 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.028 -2.343 6.223 7.307 hybrid contribution 0.651 1.080 -0.334 1.304 sum -2.377 -1.263 5.889 6.475 Atomic orbital electron populations 1.21865 0.92249 1.02919 1.03123 1.19934 0.96921 1.01176 0.88972 0.86820 1.19674 0.82482 0.86911 0.83876 1.90568 1.50048 1.21749 1.85912 1.43319 1.53958 1.13874 1.03212 1.19784 1.33058 0.89512 1.03571 0.87307 1.25276 0.95809 0.99515 0.96281 1.69787 1.30686 1.40149 1.11227 0.85924 0.79534 0.80807 0.78057 1.19712 1.20793 1.19594 1.20688 0.87627 0.96588 0.92300 1.23827 0.91954 0.73674 0.76635 1.90578 1.67187 1.39141 1.43106 1.84530 1.26863 1.72968 1.50106 1.21832 0.90701 0.93725 0.95242 1.23498 1.00665 0.92470 0.92656 1.68403 1.12295 1.27259 1.07681 1.23614 0.92841 0.96061 1.00523 1.23691 1.00191 0.93986 0.93211 1.68272 1.10933 1.28903 1.06654 0.92175 0.92282 0.89470 0.91492 0.90590 0.84157 0.75443 0.81621 0.81910 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.15 37.16 0.30 -1.91 16 2 C -0.05 -0.94 2.20 -92.93 -0.20 -1.14 16 3 H 0.11 2.35 7.27 -51.93 -0.38 1.97 16 4 C 0.48 11.50 6.57 -10.99 -0.07 11.42 16 5 O -0.60 -15.74 15.73 5.54 0.09 -15.65 16 6 N -0.43 -10.35 2.21 -116.10 -0.26 -10.61 16 7 C -0.33 -7.89 8.59 -14.94 -0.13 -8.02 16 8 H 0.11 2.35 4.95 -52.49 -0.26 2.09 16 9 C 0.03 0.83 5.10 -17.47 -0.09 0.74 16 10 N -0.88 -22.00 9.09 55.50 0.50 -21.49 16 11 Si 0.93 18.50 29.57 -169.99 -5.03 13.48 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 15 C 0.15 3.63 5.09 -5.20 -0.03 3.61 16 16 C 0.50 12.29 6.66 36.00 0.24 12.53 16 17 O -0.51 -14.53 16.99 -18.75 -0.32 -14.85 16 18 O -0.53 -10.89 13.42 -39.27 -0.53 -11.42 16 19 C 0.13 2.42 5.12 -82.41 -0.42 2.00 16 20 C 0.07 1.17 10.21 -17.37 -0.18 0.99 16 21 N -0.44 -7.31 10.50 -13.06 -0.14 -7.45 16 22 C 0.03 0.41 11.22 -17.38 -0.20 0.21 16 23 C 0.05 0.74 11.22 -17.38 -0.20 0.55 16 24 N -0.43 -8.35 10.42 -9.29 -0.10 -8.45 16 25 H 0.06 0.87 6.86 -51.93 -0.36 0.51 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.36 6.22 -51.92 -0.32 1.03 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 30 H 0.14 3.30 5.92 -51.92 -0.31 3.00 16 31 H 0.39 6.21 9.10 45.56 0.41 6.63 16 32 H 0.17 2.55 6.48 -52.49 -0.34 2.21 16 33 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 296.46 15.07 4.47 4.47 Total: -1.00 -33.58 296.46 -4.62 -38.20 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -2.35 Total: 12.80 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: -0.97 Total: 20.97 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.01 Total: -48.00 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.76 Total: -41.91 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.58 -4.62 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.160 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds