Wall clock time and date at job start Tue Mar 31 2020 00:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50698 * 109.47223 * 239.99991 * 2 1 3 5 5 O 1.21299 * 120.00028 * 253.75698 * 4 2 1 6 6 N 1.34777 * 120.00380 * 73.76057 * 4 2 1 7 7 C 1.37090 * 119.99611 * 2.94049 * 6 4 2 8 8 H 1.08000 * 120.00500 * 343.87805 * 7 6 4 9 9 C 1.38951 * 119.99832 * 163.88113 * 7 6 4 10 10 N 1.31414 * 119.99824 * 346.87872 * 9 7 6 11 11 Si 1.86800 * 120.00284 * 166.87734 * 9 7 6 12 12 H 1.48506 * 109.47133 * 59.99653 * 11 9 7 13 13 H 1.48500 * 109.47674 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47192 * 300.00211 * 11 9 7 15 15 C 1.46501 * 119.99890 * 182.94231 * 6 4 2 16 16 C 1.50695 * 109.47011 * 277.54065 * 15 6 4 17 17 O 1.20822 * 120.00353 * 0.02562 * 16 15 6 18 18 O 1.34234 * 119.99944 * 180.02562 * 16 15 6 19 19 C 1.50701 * 109.47172 * 119.99777 * 2 1 3 20 20 C 1.38383 * 120.00072 * 34.97619 * 19 2 1 21 21 N 1.32133 * 119.99790 * 179.76806 * 20 19 2 22 22 C 1.32148 * 119.99504 * 0.51151 * 21 20 19 23 23 C 1.38337 * 120.00543 * 359.49068 * 22 21 20 24 24 N 1.32132 * 119.99853 * 215.00236 * 19 2 1 25 25 H 1.09002 * 109.46957 * 173.72976 * 1 2 3 26 26 H 1.09000 * 109.47766 * 293.73085 * 1 2 3 27 27 H 1.09009 * 109.47393 * 53.73181 * 1 2 3 28 28 H 0.97003 * 119.99570 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47162 * 37.54716 * 15 6 4 30 30 H 1.09008 * 109.46567 * 157.54235 * 15 6 4 31 31 H 0.96693 * 117.00197 * 180.02562 * 18 16 15 32 32 H 1.08002 * 120.00537 * 0.02750 * 20 19 2 33 33 H 1.07998 * 119.99491 * 179.76799 * 22 21 20 34 34 H 1.08000 * 120.00175 * 180.23238 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5115 -1.8207 -1.1365 6 7 1.9492 -0.1120 -2.4352 7 6 1.4635 1.1661 -2.5337 8 1 0.9119 1.5990 -1.7122 9 6 1.6808 1.9047 -3.6904 10 7 2.5572 1.4922 -4.5785 11 14 0.7271 3.4841 -3.9831 12 1 1.0103 4.4440 -2.8860 13 1 1.1402 4.0789 -5.2795 14 1 -0.7272 3.1853 -4.0161 15 6 2.3780 -0.8276 -3.6396 16 6 3.8734 -0.7132 -3.7862 17 8 4.5153 -0.0976 -2.9684 18 8 4.4924 -1.2953 -4.8254 19 6 2.0323 -0.7104 1.2305 20 6 1.3371 -1.7951 1.7355 21 7 1.7801 -2.4208 2.8117 22 6 2.8815 -2.0043 3.4116 23 6 3.5764 -0.9198 2.9068 24 7 3.1362 -0.2971 1.8275 25 1 -0.3633 -1.0215 -0.1122 26 1 -0.3634 0.4136 0.9407 27 1 -0.3634 0.6080 -0.8286 28 1 2.7091 2.0081 -5.3858 29 1 2.1003 -1.8783 -3.5561 30 1 1.8928 -0.3919 -4.5131 31 1 5.4527 -1.1948 -4.8767 32 1 0.4348 -2.1330 1.2476 33 1 3.2415 -2.5133 4.2934 34 1 4.4785 -0.5818 3.3949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589341510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:23 Heat of formation + Delta-G solvation = -88.433562 kcal Electronic energy + Delta-G solvation = -22260.753055 eV Core-core repulsion = 18772.615030 eV Total energy + Delta-G solvation = -3488.138025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18788 -41.21171 -40.03951 -37.10560 -36.51542 -35.71785 -34.79562 -33.46625 -31.22748 -29.50638 -26.94078 -26.11926 -25.39554 -23.99207 -22.37818 -21.01804 -19.15489 -18.77002 -18.68906 -18.00243 -17.81802 -17.38941 -16.73903 -16.30856 -16.17860 -15.92352 -15.53466 -15.33772 -14.88662 -14.52015 -13.98214 -13.68968 -13.52844 -13.26968 -13.01968 -12.85809 -12.60039 -12.55539 -12.30752 -12.22482 -12.19094 -12.10769 -12.09423 -11.60747 -10.97274 -10.55639 -10.10296 -10.00418 -9.92308 -8.34635 -5.95968 -0.13896 0.20066 1.44613 1.51769 1.61402 1.70533 1.83514 2.26426 2.49539 2.67037 2.96220 3.15490 3.21173 3.39027 3.61682 3.79702 4.11915 4.21422 4.27839 4.41311 4.48369 4.52711 4.70109 4.81305 4.88363 4.96094 5.02662 5.22058 5.44797 5.52636 5.69116 5.86018 6.32547 6.36136 6.86806 7.05954 7.31494 7.45007 7.83835 8.70040 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.006525 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.214664 B = 4290.084871 C = 5166.210283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 H 0.096 0.904 4 C 0.472 3.528 5 O -0.630 6.630 6 N -0.435 5.435 7 C -0.347 4.347 8 H 0.126 0.874 9 C -0.009 4.009 10 N -0.907 5.907 11 Si 0.998 3.002 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.254 1.254 15 C 0.149 3.851 16 C 0.500 3.500 17 O -0.558 6.558 18 O -0.521 6.521 19 C 0.097 3.903 20 C 0.061 3.939 21 N -0.456 5.456 22 C 0.043 3.957 23 C 0.045 3.955 24 N -0.473 5.473 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.273 0.727 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.411 0.589 32 H 0.178 0.822 33 H 0.212 0.788 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 -1.862 7.421 8.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.063 4.063 3 H 0.114 0.886 4 C 0.261 3.739 5 O -0.518 6.518 6 N -0.153 5.153 7 C -0.473 4.473 8 H 0.143 0.857 9 C -0.209 4.209 10 N -0.547 5.547 11 Si 0.821 3.179 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.178 1.178 15 C 0.023 3.977 16 C 0.343 3.657 17 O -0.448 6.448 18 O -0.332 6.332 19 C -0.043 4.043 20 C -0.098 4.098 21 N -0.170 5.170 22 C -0.117 4.117 23 C -0.115 4.115 24 N -0.188 5.188 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.270 0.730 32 H 0.195 0.805 33 H 0.228 0.772 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.794 -2.213 7.485 8.678 hybrid contribution 1.040 0.943 -0.690 1.564 sum -2.754 -1.270 6.795 7.441 Atomic orbital electron populations 1.21844 0.89196 1.03697 1.04499 1.19862 0.99398 0.99461 0.87586 0.88592 1.20429 0.81862 0.86726 0.84841 1.90519 1.51474 1.23270 1.86563 1.43564 1.53887 1.14234 1.03581 1.20258 1.33189 0.89537 1.04323 0.85691 1.26169 0.96361 1.02510 0.95883 1.69899 1.31904 1.41358 1.11550 0.84903 0.78961 0.76764 0.77259 1.19709 1.21431 1.17790 1.20763 0.87301 0.97067 0.92523 1.24008 0.92364 0.72791 0.76488 1.90551 1.68146 1.41259 1.44801 1.84464 1.28740 1.71821 1.48220 1.21767 0.91732 0.95079 0.95678 1.23617 1.01079 0.91992 0.93075 1.68489 1.13461 1.27413 1.07651 1.24397 0.91285 0.95108 1.00875 1.24386 1.01186 0.93865 0.92059 1.68208 1.11504 1.30626 1.08489 0.91320 0.89518 0.89708 0.91740 0.89783 0.84198 0.73004 0.80497 0.77191 0.78183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.15 71.98 0.59 -3.44 16 2 C -0.04 -1.61 2.20 -12.29 -0.03 -1.64 16 3 H 0.10 4.07 7.27 -2.39 -0.02 4.05 16 4 C 0.47 22.88 6.57 87.66 0.58 23.46 16 5 O -0.63 -33.95 15.73 -3.09 -0.05 -34.00 16 6 N -0.44 -21.52 2.21 -639.60 -1.41 -22.93 16 7 C -0.35 -16.53 8.59 84.04 0.72 -15.81 16 8 H 0.13 5.38 4.95 -2.91 -0.01 5.36 16 9 C -0.01 -0.42 5.10 84.93 0.43 0.01 16 10 N -0.91 -45.78 9.09 21.66 0.20 -45.59 16 11 Si 1.00 37.46 29.57 68.60 2.03 39.49 16 12 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 13 H -0.29 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 15 C 0.15 7.18 5.09 85.63 0.44 7.62 16 16 C 0.50 25.06 6.66 71.23 0.47 25.53 16 17 O -0.56 -32.26 16.99 21.98 0.37 -31.89 16 18 O -0.52 -21.08 13.42 -51.46 -0.69 -21.77 16 19 C 0.10 3.71 5.12 42.55 0.22 3.93 16 20 C 0.06 2.06 10.21 84.68 0.86 2.92 16 21 N -0.46 -14.15 10.50 -195.23 -2.05 -16.20 16 22 C 0.04 1.09 11.22 84.67 0.95 2.04 16 23 C 0.05 1.27 11.22 84.67 0.95 2.22 16 24 N -0.47 -18.03 10.42 -183.30 -1.91 -19.94 16 25 H 0.07 1.91 6.86 -2.39 -0.02 1.90 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 2.55 6.22 -2.38 -0.01 2.53 16 28 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 29 H 0.08 3.82 7.70 -2.39 -0.02 3.80 16 30 H 0.14 6.71 5.92 -2.38 -0.01 6.70 16 31 H 0.41 12.81 9.10 -74.06 -0.67 12.13 16 32 H 0.18 5.30 6.48 -2.91 -0.02 5.28 16 33 H 0.21 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.20 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -73.77 296.46 3.17 -70.60 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.50 Total: 35.36 kcal Atomic # 6 Polarization: 40.67 SS G_CDS: 6.18 Total: 46.86 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -5.17 Total: -104.66 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -0.37 Total: -87.65 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -73.77 3.17 -70.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.830 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds