Wall clock time and date at job start Tue Mar 31 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 C 1.50706 * 109.47164 * 239.99975 * 2 1 3 5 5 H 1.07992 * 120.00000 * 240.00193 * 4 2 1 6 6 C 1.37878 * 119.99720 * 59.99992 * 4 2 1 7 7 N 1.31516 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99830 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46832 * 120.00020 * 8 6 4 11 11 H 1.48496 * 109.47128 * 240.00005 * 8 6 4 12 12 N 1.46499 * 109.47057 * 120.00228 * 2 1 3 13 13 C 1.34774 * 119.99899 * 274.99913 * 12 2 1 14 14 O 1.21585 * 119.99917 * 0.02562 * 13 12 2 15 15 N 1.34772 * 120.00427 * 180.02562 * 13 12 2 16 16 C 1.39367 * 120.00624 * 185.09736 * 15 13 12 17 17 C 1.39434 * 119.63075 * 174.90704 * 16 15 13 18 18 C 1.38296 * 119.29920 * 179.97438 * 17 16 15 19 19 C 1.38797 * 118.57705 * 359.72873 * 18 17 16 20 20 C 1.39182 * 119.20476 * 0.52921 * 19 18 17 21 21 C 1.48053 * 119.68551 * 179.73080 * 20 19 18 22 22 O 1.21429 * 119.99817 * 359.73557 * 21 20 19 23 23 O 1.34684 * 119.99898 * 179.72819 * 21 20 19 24 24 N 1.31981 * 119.62491 * 354.87816 * 16 15 13 25 25 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46953 * 299.99633 * 1 2 3 27 27 H 1.08997 * 109.47045 * 60.00243 * 1 2 3 28 28 H 0.97007 * 120.00089 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00140 * 95.00565 * 12 2 1 30 30 H 0.97008 * 119.99406 * 5.08876 * 15 13 12 31 31 H 1.07999 * 120.34364 * 359.95065 * 17 16 15 32 32 H 1.08009 * 120.70887 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.39985 * 180.28857 * 19 18 17 34 34 H 0.96696 * 116.99528 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1484 -2.2855 -3.6039 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1612 2.4118 15 7 2.5968 -0.6535 3.4574 16 6 2.6296 0.0117 4.6817 17 6 2.9947 -0.6830 5.8341 18 6 3.0255 -0.0160 7.0452 19 6 2.6950 1.3318 7.0695 20 6 2.3342 1.9640 5.8832 21 6 1.9739 3.4000 5.8978 22 8 1.9894 4.0192 6.9423 23 8 1.6290 4.0194 4.7527 24 7 2.3152 1.2924 4.7369 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7087 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8975 -1.5738 3.3973 31 1 3.2504 -1.7310 5.7815 32 1 3.3046 -0.5320 7.9521 33 1 2.7138 1.8825 7.9983 34 1 1.4023 4.9575 4.8122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:09 Heat of formation + Delta-G solvation = -62.878064 kcal Electronic energy + Delta-G solvation = -21080.256496 eV Core-core repulsion = 17593.226640 eV Total energy + Delta-G solvation = -3487.029856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95029 -39.85717 -38.72040 -36.07400 -35.23794 -34.24150 -32.72126 -32.35717 -30.41482 -28.48221 -25.57659 -25.24613 -23.71211 -21.84651 -21.22034 -19.85274 -18.69100 -18.04743 -17.78906 -16.48483 -16.20768 -16.03972 -15.79387 -15.26234 -14.99200 -14.88291 -14.01968 -13.59240 -13.55300 -13.29760 -13.12657 -12.37757 -12.33356 -11.77473 -11.48812 -11.11816 -11.05060 -10.97981 -10.81447 -10.54162 -10.27620 -10.22939 -10.03438 -9.91681 -9.02689 -8.90769 -8.55263 -8.35050 -7.83989 -6.12126 -4.21326 0.43219 1.19187 2.38033 2.77105 2.97656 3.23687 3.31611 3.33993 3.62839 4.09672 4.18550 4.33810 4.65467 4.76912 4.90248 4.98281 5.19214 5.21111 5.32834 5.72926 5.92338 6.11600 6.41629 6.67315 6.79418 6.98477 7.01703 7.19028 7.48396 7.58339 7.66693 7.85678 7.96078 8.11982 8.16678 8.73624 8.86806 9.28763 9.47767 10.93924 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028109 B = 0.003912 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.879774 B = 7156.198640 C = 7897.897317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.721 5.721 13 C 0.677 3.323 14 O -0.528 6.528 15 N -0.675 5.675 16 C 0.389 3.611 17 C -0.185 4.185 18 C -0.054 4.054 19 C -0.152 4.152 20 C 0.122 3.878 21 C 0.546 3.454 22 O -0.517 6.517 23 O -0.476 6.476 24 N -0.424 5.424 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.384 0.616 30 H 0.410 0.590 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -3.793 17.338 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.373 5.373 13 C 0.376 3.624 14 O -0.399 6.399 15 N -0.323 5.323 16 C 0.153 3.847 17 C -0.209 4.209 18 C -0.080 4.080 19 C -0.175 4.175 20 C -0.016 4.016 21 C 0.389 3.611 22 O -0.406 6.406 23 O -0.284 6.284 24 N -0.141 5.141 25 H 0.044 0.956 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.216 0.784 30 H 0.247 0.753 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.250 -2.348 16.506 16.986 hybrid contribution 0.630 -1.279 -0.200 1.440 sum 3.880 -3.627 16.306 17.149 Atomic orbital electron populations 1.22096 0.98539 0.99015 1.00978 1.18686 0.90840 0.93798 0.78744 0.93195 1.21240 1.32443 1.13243 0.90243 0.92048 1.24882 0.94832 0.94969 0.99025 1.69920 1.35817 1.22419 1.23788 0.86385 0.78575 0.79478 0.82580 1.19788 1.20888 1.20883 1.45894 1.69038 1.13210 1.09186 1.16328 0.79825 0.85922 0.80297 1.91055 1.53197 1.12891 1.82731 1.43101 1.66811 1.16393 1.06034 1.18209 0.92768 0.88300 0.85439 1.21754 1.05518 1.01687 0.91984 1.21287 0.95607 0.93352 0.97771 1.21903 1.01272 0.95550 0.98747 1.19851 1.00594 0.91547 0.89618 1.20531 0.72628 0.86926 0.81029 1.90872 1.50474 1.66321 1.32920 1.84862 1.78314 1.30171 1.35083 1.67746 1.13373 1.06644 1.26325 0.95596 0.96521 0.89129 0.92604 0.78390 0.75348 0.83918 0.83516 0.83476 0.73275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.15 2.56 -69.08 -0.18 6.97 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.72 -14.78 5.07 -59.81 -0.30 -15.09 16 13 C 0.68 13.83 8.49 -86.93 -0.74 13.09 16 14 O -0.53 -13.22 14.27 5.29 0.08 -13.15 16 15 N -0.67 -10.00 5.39 -15.80 -0.09 -10.09 16 16 C 0.39 5.74 7.42 -154.91 -1.15 4.59 16 17 C -0.18 -1.81 9.94 -39.11 -0.39 -2.20 16 18 C -0.05 -0.47 10.16 -39.35 -0.40 -0.87 16 19 C -0.15 -1.70 9.63 -39.02 -0.38 -2.08 16 20 C 0.12 1.85 6.74 -83.04 -0.56 1.29 16 21 C 0.55 8.29 8.32 34.76 0.29 8.58 16 22 O -0.52 -7.98 17.10 -19.21 -0.33 -8.31 16 23 O -0.48 -7.10 13.24 -40.45 -0.54 -7.63 16 24 N -0.42 -7.56 7.64 -8.94 -0.07 -7.63 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.38 6.56 8.56 -40.82 -0.35 6.21 16 30 H 0.41 4.18 8.72 -40.82 -0.36 3.83 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.15 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.15 1.40 7.63 -52.49 -0.40 1.00 16 34 H 0.41 3.70 9.11 45.56 0.42 4.11 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -35.99 307.56 -7.19 -43.18 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.63 Total: 9.41 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -3.55 Total: 13.41 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.17 Total: -56.98 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.79 Total: -29.09 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.99 -7.19 -43.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.698 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds