Wall clock time and date at job start Tue Mar 31 2020 00:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 C 1.50706 * 109.47164 * 239.99975 * 2 1 3 5 5 H 1.07992 * 120.00000 * 240.00193 * 4 2 1 6 6 C 1.37878 * 119.99720 * 59.99992 * 4 2 1 7 7 N 1.31516 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99830 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46832 * 120.00020 * 8 6 4 11 11 H 1.48496 * 109.47128 * 240.00005 * 8 6 4 12 12 N 1.46499 * 109.47057 * 120.00228 * 2 1 3 13 13 C 1.34774 * 119.99899 * 274.99913 * 12 2 1 14 14 O 1.21585 * 119.99917 * 0.02562 * 13 12 2 15 15 N 1.34772 * 120.00427 * 180.02562 * 13 12 2 16 16 C 1.39367 * 120.00624 * 185.09736 * 15 13 12 17 17 C 1.39434 * 119.63075 * 174.90704 * 16 15 13 18 18 C 1.38296 * 119.29920 * 179.97438 * 17 16 15 19 19 C 1.38797 * 118.57705 * 359.72873 * 18 17 16 20 20 C 1.39182 * 119.20476 * 0.52921 * 19 18 17 21 21 C 1.48053 * 119.68551 * 179.73080 * 20 19 18 22 22 O 1.21429 * 119.99817 * 359.73557 * 21 20 19 23 23 O 1.34684 * 119.99898 * 179.72819 * 21 20 19 24 24 N 1.31981 * 119.62491 * 354.87816 * 16 15 13 25 25 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46953 * 299.99633 * 1 2 3 27 27 H 1.08997 * 109.47045 * 60.00243 * 1 2 3 28 28 H 0.97007 * 120.00089 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00140 * 95.00565 * 12 2 1 30 30 H 0.97008 * 119.99406 * 5.08876 * 15 13 12 31 31 H 1.07999 * 120.34364 * 359.95065 * 17 16 15 32 32 H 1.08009 * 120.70887 * 179.97438 * 18 17 16 33 33 H 1.07996 * 120.39985 * 180.28857 * 19 18 17 34 34 H 0.96696 * 116.99528 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1484 -2.2855 -3.6039 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8575 1.1612 2.4118 15 7 2.5968 -0.6535 3.4574 16 6 2.6296 0.0117 4.6817 17 6 2.9947 -0.6830 5.8341 18 6 3.0255 -0.0160 7.0452 19 6 2.6950 1.3318 7.0695 20 6 2.3342 1.9640 5.8832 21 6 1.9739 3.4000 5.8978 22 8 1.9894 4.0192 6.9423 23 8 1.6290 4.0194 4.7527 24 7 2.3152 1.2924 4.7369 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7087 1.1613 -3.4844 29 1 2.2491 -1.6318 1.1525 30 1 2.8975 -1.5738 3.3973 31 1 3.2504 -1.7310 5.7815 32 1 3.3046 -0.5320 7.9521 33 1 2.7138 1.8825 7.9983 34 1 1.4023 4.9575 4.8122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:08 Heat of formation + Delta-G solvation = -91.175923 kcal Electronic energy + Delta-G solvation = -21081.483583 eV Core-core repulsion = 17593.226640 eV Total energy + Delta-G solvation = -3488.256943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04133 -41.12914 -40.04350 -37.24829 -36.89606 -35.76470 -34.30314 -33.58246 -31.73097 -30.18284 -27.32119 -26.59625 -24.88493 -23.08042 -22.67206 -21.52135 -20.05716 -19.37110 -18.98412 -17.92546 -17.66202 -16.96897 -16.94415 -16.85802 -16.36933 -16.25286 -15.73623 -15.02071 -14.79417 -14.52821 -14.33508 -14.08906 -13.71816 -13.12866 -12.97052 -12.89857 -12.71327 -12.64877 -12.26822 -12.15581 -12.09269 -11.85329 -11.36100 -11.06776 -10.92682 -10.60006 -10.17515 -9.81543 -9.28272 -8.15356 -6.32791 -0.52413 0.29843 1.31658 1.46484 1.46765 1.57487 1.62530 1.94551 2.27906 2.43300 2.90332 3.10105 3.15886 3.59714 3.83635 4.06120 4.14232 4.27455 4.48530 4.75172 4.92166 4.95309 5.10041 5.12243 5.25288 5.36039 5.41260 5.61023 5.67863 5.72414 5.84198 6.08602 6.12688 6.71938 6.76625 6.99972 7.34264 7.39371 7.79492 8.91506 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028109 B = 0.003912 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.879774 B = 7156.198640 C = 7897.897317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.290 3.710 3 H -0.004 1.004 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.715 5.715 13 C 0.678 3.322 14 O -0.583 6.583 15 N -0.657 5.657 16 C 0.351 3.649 17 C -0.152 4.152 18 C -0.040 4.040 19 C -0.134 4.134 20 C 0.080 3.920 21 C 0.543 3.457 22 O -0.529 6.529 23 O -0.497 6.497 24 N -0.482 5.482 25 H 0.041 0.959 26 H 0.007 0.993 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.434 0.566 31 H 0.192 0.808 32 H 0.202 0.798 33 H 0.165 0.835 34 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.253 -7.106 19.180 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.186 3.814 3 H 0.014 0.986 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.181 1.181 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.369 5.369 13 C 0.377 3.623 14 O -0.457 6.457 15 N -0.309 5.309 16 C 0.116 3.884 17 C -0.176 4.176 18 C -0.065 4.065 19 C -0.156 4.156 20 C -0.056 4.056 21 C 0.387 3.613 22 O -0.419 6.419 23 O -0.309 6.309 24 N -0.200 5.200 25 H 0.060 0.940 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.274 0.726 31 H 0.209 0.791 32 H 0.219 0.781 33 H 0.183 0.817 34 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.724 -5.707 18.424 19.858 hybrid contribution 0.205 -0.226 -0.612 0.684 sum 4.929 -5.933 17.812 19.410 Atomic orbital electron populations 1.21901 0.98545 0.99378 0.99292 1.18220 0.90776 0.91610 0.80809 0.98620 1.21566 1.32490 1.13576 0.90518 0.90503 1.25824 0.94900 0.95589 1.02394 1.70080 1.37083 1.24041 1.24524 0.85254 0.78032 0.78491 0.78264 1.18097 1.20496 1.21194 1.45436 1.69265 1.13908 1.08293 1.16463 0.79324 0.85317 0.81180 1.91024 1.55387 1.15466 1.83864 1.42602 1.66333 1.17164 1.04785 1.18675 0.95096 0.88217 0.86420 1.22249 1.01755 1.03473 0.90074 1.21942 0.93316 0.92005 0.99248 1.22282 0.98671 0.96905 0.97753 1.20032 1.03611 0.91428 0.90560 1.20834 0.72220 0.87521 0.80733 1.90838 1.51377 1.66763 1.32946 1.84848 1.78383 1.31927 1.35703 1.67444 1.15179 1.08874 1.28459 0.93959 0.97408 0.91547 0.92602 0.76118 0.72589 0.79106 0.78077 0.81740 0.71213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.19 16 2 C 0.29 15.22 2.56 44.25 0.11 15.33 16 3 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 4 C -0.54 -28.54 8.73 25.60 0.22 -28.31 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.69 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.14 11.32 21.45 0.24 -52.90 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 9 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 N -0.71 -29.53 5.07 -461.41 -2.34 -31.87 16 13 C 0.68 28.23 8.49 179.06 1.52 29.75 16 14 O -0.58 -30.83 14.27 -3.98 -0.06 -30.89 16 15 N -0.66 -18.69 5.39 -322.17 -1.74 -20.43 16 16 C 0.35 9.84 7.42 133.14 0.99 10.83 16 17 C -0.15 -2.28 9.94 22.57 0.22 -2.05 16 18 C -0.04 -0.48 10.16 22.42 0.23 -0.25 16 19 C -0.13 -2.64 9.63 22.63 0.22 -2.43 16 20 C 0.08 2.43 6.74 41.82 0.28 2.71 16 21 C 0.54 17.23 8.32 70.43 0.59 17.82 16 22 O -0.53 -16.66 17.10 20.06 0.34 -16.32 16 23 O -0.50 -16.06 13.24 -55.93 -0.74 -16.80 16 24 N -0.48 -17.54 7.64 -182.20 -1.39 -18.93 16 25 H 0.04 1.98 8.14 -2.38 -0.02 1.97 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 28 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 29 H 0.40 13.27 8.56 -92.71 -0.79 12.48 16 30 H 0.43 7.63 8.72 -92.70 -0.81 6.82 16 31 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.20 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.17 2.63 7.63 -2.91 -0.02 2.61 16 34 H 0.43 8.68 9.11 -74.06 -0.67 8.01 16 Total: -1.00 -84.57 307.56 0.75 -83.82 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -1.09 Total: 22.22 kcal Atomic # 6 Polarization: 32.85 SS G_CDS: 5.50 Total: 38.35 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -5.23 Total: -124.12 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -0.45 Total: -64.01 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -84.57 0.75 -83.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.358 kcal (2) G-P(sol) polarization free energy of solvation -84.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds