Wall clock time and date at job start Tue Mar 31 2020 00:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00211 * 2 1 4 4 C 1.50703 * 109.47069 * 269.99958 * 3 2 1 5 5 H 1.08006 * 120.00032 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00295 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99925 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 119.99779 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47115 * 90.00073 * 8 6 4 10 10 H 1.48495 * 109.47315 * 210.00226 * 8 6 4 11 11 H 1.48501 * 109.47190 * 330.00298 * 8 6 4 12 12 C 1.34782 * 120.00020 * 179.97438 * 2 1 3 13 13 O 1.21581 * 120.00076 * 179.97438 * 12 2 1 14 14 N 1.34776 * 120.00017 * 0.02562 * 12 2 1 15 15 C 1.39550 * 120.00093 * 184.63820 * 14 12 2 16 16 C 1.39347 * 120.82389 * 145.04137 * 15 14 12 17 17 C 1.38296 * 119.27773 * 180.02562 * 16 15 14 18 18 N 1.31609 * 120.99044 * 359.97438 * 17 16 15 19 19 C 1.32841 * 121.81230 * 359.72737 * 18 17 16 20 20 C 1.48085 * 119.69424 * 180.26846 * 19 18 17 21 21 O 1.21424 * 119.99372 * 180.26792 * 20 19 18 22 22 O 1.34671 * 120.00253 * 0.26560 * 20 19 18 23 23 C 1.39114 * 120.60599 * 0.53578 * 19 18 17 24 24 H 1.09003 * 109.47093 * 270.00353 * 1 2 3 25 25 H 1.08997 * 109.46898 * 29.99950 * 1 2 3 26 26 H 1.09000 * 109.47555 * 150.00331 * 1 2 3 27 27 H 1.08996 * 109.47429 * 29.99747 * 3 2 1 28 28 H 1.09005 * 109.47287 * 150.00208 * 3 2 1 29 29 H 0.97004 * 119.99467 * 179.97438 * 7 6 4 30 30 H 0.97010 * 119.99350 * 4.63930 * 14 12 2 31 31 H 1.08008 * 120.36022 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.50639 * 179.97438 * 17 16 15 33 33 H 0.96694 * 117.00189 * 179.97438 * 22 20 19 34 34 H 1.07995 * 120.51754 * 179.74966 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2418 6 6 3.1270 2.8774 -1.6729 7 7 3.3466 3.2567 -2.9128 8 14 3.7340 3.9286 -0.2531 9 1 5.1071 3.5067 0.1235 10 1 3.7499 5.3552 -0.6650 11 1 2.8274 3.7596 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3547 -1.1673 0.0001 14 7 1.4650 -2.3344 0.0005 15 6 2.1593 -3.5410 0.0988 16 6 1.6183 -4.6216 0.7926 17 6 2.3343 -5.8023 0.8703 18 7 3.5145 -5.9179 0.2995 19 6 4.0664 -4.9165 -0.3767 20 6 5.3945 -5.1000 -1.0055 21 8 5.9062 -4.1868 -1.6208 22 8 6.0347 -6.2797 -0.8949 23 6 3.4107 -3.6954 -0.4950 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 3.8235 4.0826 -3.0901 30 1 0.4973 -2.3357 -0.0678 31 1 0.6507 -4.5378 1.2652 32 1 1.9186 -6.6420 1.4075 33 1 6.8990 -6.3519 -1.3224 34 1 3.8625 -2.8809 -1.0417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593728179.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:16 Heat of formation + Delta-G solvation = -59.050714 kcal Electronic energy + Delta-G solvation = -21185.415350 eV Core-core repulsion = 17698.551461 eV Total energy + Delta-G solvation = -3486.863889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04654 -40.01282 -39.04651 -36.11180 -35.61975 -34.91609 -32.61450 -31.64931 -30.81806 -28.41261 -26.18680 -25.43845 -23.95371 -22.46084 -21.50979 -19.90683 -18.53998 -18.05868 -17.39679 -17.03890 -16.36744 -16.00205 -15.80481 -15.70368 -15.19326 -14.66885 -14.18401 -13.89717 -13.83299 -13.41964 -13.39803 -12.90797 -12.47364 -12.21113 -12.20244 -11.58804 -11.56032 -11.08767 -10.94123 -10.81270 -10.57723 -10.21678 -10.05687 -9.62061 -9.47265 -9.28842 -8.69533 -8.62557 -7.86852 -6.12385 -4.12234 0.43671 1.13635 2.37929 2.66241 2.93350 3.27081 3.32573 3.35575 3.48254 3.80533 4.11560 4.24802 4.36143 4.75979 4.77123 4.93131 5.19548 5.25914 5.31603 5.41326 5.62104 5.69101 5.93544 6.02387 6.25546 6.36733 6.41127 6.70100 6.76069 7.06229 7.25939 7.54367 7.57985 7.95287 8.20693 8.41220 8.86923 8.92477 9.46752 11.00915 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020083 B = 0.004703 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.856088 B = 5952.468913 C = 6960.884627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.230 3.770 4 C -0.534 4.534 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.697 3.303 13 O -0.560 6.560 14 N -0.689 5.689 15 C 0.216 3.784 16 C -0.180 4.180 17 C 0.113 3.887 18 N -0.457 5.457 19 C 0.102 3.898 20 C 0.540 3.460 21 O -0.493 6.493 22 O -0.496 6.496 23 C -0.105 4.105 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.409 0.591 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.411 0.589 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -16.885 8.314 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C 0.109 3.891 4 C -0.572 4.572 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.399 3.601 13 O -0.435 6.435 14 N -0.339 5.339 15 C 0.110 3.890 16 C -0.204 4.204 17 C -0.048 4.048 18 N -0.170 5.170 19 C -0.033 4.033 20 C 0.382 3.618 21 O -0.379 6.379 22 O -0.306 6.306 23 C -0.128 4.128 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.162 0.838 32 H 0.184 0.816 33 H 0.269 0.731 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.366 -17.027 8.259 19.670 hybrid contribution -0.188 1.458 0.180 1.481 sum -5.554 -15.569 8.439 18.560 Atomic orbital electron populations 1.21665 0.80883 1.03018 1.00669 1.47161 1.06003 1.05579 1.74969 1.19680 0.92315 0.78491 0.98597 1.21314 1.37424 1.07314 0.91168 0.90722 1.24842 0.95103 0.97327 0.95609 1.69893 1.41169 1.23546 1.18684 0.86853 0.80240 0.79795 0.82787 1.19799 1.21002 1.19076 1.15904 0.85557 0.80044 0.78601 1.90946 1.11161 1.85291 1.56057 1.42878 1.10430 1.03268 1.77349 1.17623 0.92320 0.85772 0.93238 1.22187 1.03250 0.94410 1.00519 1.22557 0.89530 0.96468 0.96248 1.67620 1.11472 1.30562 1.07324 1.19738 0.93223 0.90810 0.99577 1.20439 0.84561 0.79835 0.77015 1.90985 1.66171 1.41991 1.38739 1.84656 1.36989 1.36207 1.72774 1.22419 0.94743 0.97845 0.97840 0.93255 0.89752 0.92812 0.94771 0.94251 0.92461 0.75284 0.83818 0.81575 0.73111 0.81073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.24 59.84 0.61 1.72 16 2 N -0.60 -11.75 2.86 -188.74 -0.54 -12.29 16 3 C 0.23 5.44 4.23 -5.19 -0.02 5.42 16 4 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 5 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 8 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 C 0.70 13.80 8.14 -86.91 -0.71 13.09 16 13 O -0.56 -13.58 13.41 5.29 0.07 -13.51 16 14 N -0.69 -9.89 5.22 -14.08 -0.07 -9.96 16 15 C 0.22 3.05 6.34 -83.51 -0.53 2.52 16 16 C -0.18 -1.81 10.06 -39.15 -0.39 -2.20 16 17 C 0.11 1.15 11.17 -17.63 -0.20 0.95 16 18 N -0.46 -6.19 10.12 -9.89 -0.10 -6.29 16 19 C 0.10 1.58 6.74 -83.07 -0.56 1.02 16 20 C 0.54 8.33 8.32 34.77 0.29 8.61 16 21 O -0.49 -9.15 17.11 -19.21 -0.33 -9.48 16 22 O -0.50 -5.78 13.24 -40.41 -0.54 -6.32 16 23 C -0.11 -1.78 8.29 -38.84 -0.32 -2.10 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 27 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 28 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.41 4.26 6.52 -40.82 -0.27 3.99 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.41 2.66 9.11 45.56 0.42 3.08 16 34 H 0.17 3.53 5.90 -52.49 -0.31 3.22 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -37.72 303.59 -5.59 -43.31 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.49 Total: 4.37 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -2.27 Total: 15.66 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.06 Total: -55.24 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.79 Total: -29.31 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -37.72 -5.59 -43.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593728179.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.746 kcal (2) G-P(sol) polarization free energy of solvation -37.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds