Wall clock time and date at job start Tue Mar 31 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28464 * 125.05997 * 2 1 4 4 C 1.31996 * 110.48958 * 180.24753 * 3 2 1 5 5 C 1.47629 * 126.27764 * 179.77395 * 4 3 2 6 6 O 1.21486 * 119.99863 * 179.97438 * 5 4 3 7 7 O 1.34718 * 119.99944 * 359.95831 * 5 4 3 8 8 C 1.40960 * 107.44687 * 359.73975 * 4 3 2 9 9 C 1.36768 * 125.06190 * 179.79572 * 2 1 3 10 10 C 1.47208 * 126.63618 * 0.02686 * 9 2 1 11 11 O 1.21618 * 120.00222 * 4.48663 * 10 9 2 12 12 N 1.34777 * 119.99988 * 184.48314 * 10 9 2 13 13 C 1.47579 * 134.49634 * 174.61023 * 12 10 9 14 14 C 1.53944 * 86.12130 * 155.35616 * 13 12 10 15 15 C 1.50701 * 113.74126 * 137.94575 * 14 13 12 16 16 H 1.07993 * 120.00088 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99898 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00331 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46888 * 90.00261 * 19 17 15 21 21 H 1.48500 * 109.47061 * 210.00671 * 19 17 15 22 22 H 1.48501 * 109.46905 * 330.00544 * 19 17 15 23 23 C 1.47587 * 134.49202 * 354.60612 * 12 10 9 24 24 H 1.08992 * 109.47370 * 275.00327 * 1 2 3 25 25 H 1.08998 * 109.46935 * 35.00559 * 1 2 3 26 26 H 1.08999 * 109.46785 * 155.00344 * 1 2 3 27 27 H 0.96700 * 117.00081 * 180.02562 * 7 5 4 28 28 H 1.07996 * 127.27407 * 179.97438 * 8 4 3 29 29 H 1.08999 * 113.77206 * 41.05290 * 13 12 10 30 30 H 1.09007 * 113.76797 * 269.66107 * 13 12 10 31 31 H 1.08995 * 113.74150 * 269.25881 * 14 13 12 32 32 H 0.97001 * 120.00304 * 180.02562 * 18 17 15 33 33 H 1.08999 * 113.76610 * 90.33704 * 23 12 10 34 34 H 1.09002 * 113.76727 * 318.94036 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0515 0.0000 4 6 3.4804 0.7195 -0.0053 5 6 4.6252 1.6516 -0.0118 6 8 5.7605 1.2192 -0.0159 7 8 4.4109 2.9816 -0.0134 8 6 3.5512 -0.6883 -0.0030 9 6 2.2506 -1.1195 0.0040 10 6 1.7884 -2.5171 0.0084 11 8 0.6006 -2.7650 -0.0736 12 7 2.6815 -3.5220 0.1033 13 6 2.5785 -4.9882 0.2357 14 6 3.9811 -5.0390 -0.3967 15 6 4.9064 -6.0321 0.2581 16 1 4.5594 -6.6256 1.0909 17 6 6.1955 -6.1837 -0.2068 18 7 6.6179 -5.4613 -1.2214 19 14 7.3422 -7.4152 0.6044 20 1 7.2095 -8.7325 -0.0682 21 1 8.7437 -6.9383 0.4870 22 1 6.9849 -7.5537 2.0391 23 6 4.1553 -3.5980 0.1164 24 1 -0.3634 0.0896 1.0237 25 1 -0.3633 0.8417 -0.5895 26 1 -0.3633 -0.9314 -0.4343 27 1 5.1917 3.5521 -0.0181 28 1 4.4423 -1.2984 -0.0064 29 1 1.8003 -5.4319 -0.3852 30 1 2.5495 -5.3351 1.2687 31 1 3.9698 -5.1194 -1.4836 32 1 7.5248 -5.5682 -1.5487 33 1 4.5895 -3.5364 1.1143 34 1 4.6360 -2.9317 -0.5999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594564243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:44 Heat of formation + Delta-G solvation = -5.288782 kcal Electronic energy + Delta-G solvation = -21308.447414 eV Core-core repulsion = 17823.914817 eV Total energy + Delta-G solvation = -3484.532597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.74483 -39.91099 -39.37179 -37.14576 -36.12575 -33.58809 -32.74515 -31.47307 -29.01925 -27.92757 -25.43538 -25.37667 -24.13031 -22.63761 -20.94663 -20.14802 -19.05854 -17.84890 -17.18336 -16.83766 -16.55650 -16.28903 -16.03775 -15.43591 -14.82829 -14.70745 -14.46973 -14.02767 -13.47771 -13.30150 -12.88875 -12.80221 -12.43487 -12.16290 -11.71612 -11.62507 -11.35605 -11.18736 -11.00031 -10.89106 -10.84510 -10.44372 -9.90404 -9.40837 -9.40388 -9.22864 -9.13174 -8.64025 -8.06461 -6.21925 -4.28637 1.16183 1.43427 2.12131 2.88836 3.04513 3.22878 3.30882 3.32345 3.36011 3.46562 4.25002 4.30712 4.56239 5.01964 5.07264 5.07674 5.16173 5.38398 5.49851 5.59889 5.92976 6.01196 6.13063 6.17816 6.27298 6.32964 6.41229 6.46305 6.50304 6.70370 7.47207 7.58305 7.74840 7.90352 8.07637 8.19001 8.42766 8.75119 9.39105 10.87584 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.004998 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.899067 B = 5600.490667 C = 7028.815644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.244 5.244 3 N -0.216 5.216 4 C -0.022 4.022 5 C 0.577 3.423 6 O -0.499 6.499 7 O -0.504 6.504 8 C -0.124 4.124 9 C -0.022 4.022 10 C 0.598 3.402 11 O -0.563 6.563 12 N -0.621 5.621 13 C 0.109 3.891 14 C 0.035 3.965 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.883 5.883 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.095 3.905 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.414 0.586 28 H 0.183 0.817 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.266 0.734 33 H 0.083 0.917 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 11.817 2.259 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.036 5.036 3 N -0.058 5.058 4 C -0.176 4.176 5 C 0.418 3.582 6 O -0.385 6.385 7 O -0.315 6.315 8 C -0.151 4.151 9 C -0.148 4.148 10 C 0.386 3.614 11 O -0.445 6.445 12 N -0.352 5.352 13 C -0.012 4.012 14 C 0.016 3.984 15 C -0.561 4.561 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.027 4.027 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.141 0.859 27 H 0.272 0.728 28 H 0.200 0.800 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.475 12.394 2.085 15.159 hybrid contribution 1.721 -0.649 0.431 1.889 sum -6.755 11.745 2.516 13.781 Atomic orbital electron populations 1.22573 0.71647 1.06958 1.04975 1.45846 1.08345 1.01652 1.47783 1.73643 1.02840 1.13245 1.16039 1.20478 0.89705 0.92328 1.15093 1.19158 0.86430 0.80559 0.72088 1.90964 1.22994 1.78533 1.45971 1.84628 1.43360 1.17799 1.85671 1.22396 0.97405 0.92771 1.02560 1.21292 0.90563 0.90285 1.12615 1.16471 0.85007 0.81995 0.77917 1.90690 1.15744 1.84239 1.53856 1.50247 1.09440 1.07531 1.68027 1.23635 1.00780 0.75740 1.01085 1.20518 0.89096 0.91057 0.97714 1.20919 0.96451 1.21878 1.16810 0.91736 1.25022 0.98250 0.95620 0.94548 1.69936 1.17991 1.39452 1.24592 0.86532 0.79980 0.81272 0.79903 1.20489 1.21093 1.19686 1.24075 0.76025 1.01342 1.01242 0.89407 0.88674 0.85937 0.72771 0.80038 0.91490 0.90149 0.91388 0.92467 0.89893 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.99 59.84 0.66 1.51 16 2 N -0.24 -3.65 3.75 -64.20 -0.24 -3.90 16 3 N -0.22 -3.33 11.97 33.32 0.40 -2.93 16 4 C -0.02 -0.35 7.13 -82.93 -0.59 -0.94 16 5 C 0.58 8.42 8.34 34.56 0.29 8.71 16 6 O -0.50 -8.45 17.70 -19.26 -0.34 -8.79 16 7 O -0.50 -5.53 13.44 -40.54 -0.54 -6.07 16 8 C -0.12 -2.08 9.83 -39.00 -0.38 -2.46 16 9 C -0.02 -0.38 6.90 -82.47 -0.57 -0.95 16 10 C 0.60 11.21 8.03 -12.62 -0.10 11.11 16 11 O -0.56 -11.13 15.26 5.26 0.08 -11.05 16 12 N -0.62 -11.94 3.61 -179.76 -0.65 -12.59 16 13 C 0.11 2.09 8.39 -2.98 -0.02 2.07 16 14 C 0.04 0.78 3.62 -90.84 -0.33 0.46 16 15 C -0.52 -12.74 8.77 -34.44 -0.30 -13.04 16 16 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 17 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -23.50 13.27 55.43 0.74 -22.76 16 19 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C 0.09 1.90 6.65 -2.97 -0.02 1.88 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.12 1.48 5.93 -51.93 -0.31 1.17 16 27 H 0.41 2.29 9.11 45.56 0.42 2.71 16 28 H 0.18 3.08 5.26 -52.49 -0.28 2.81 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 31 H 0.07 1.65 8.13 -51.93 -0.42 1.23 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 33 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 34 H 0.07 1.45 6.46 -51.93 -0.34 1.11 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -30.50 305.57 -5.03 -35.53 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -2.58 Total: 3.32 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -1.47 Total: 10.00 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.25 Total: -42.18 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.81 Total: -25.91 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.50 -5.03 -35.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594564243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.238 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds