Wall clock time and date at job start Tue Mar 31 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28464 * 125.05997 * 2 1 4 4 C 1.31996 * 110.48958 * 180.24753 * 3 2 1 5 5 C 1.47629 * 126.27764 * 179.77395 * 4 3 2 6 6 O 1.21486 * 119.99863 * 179.97438 * 5 4 3 7 7 O 1.34718 * 119.99944 * 359.95831 * 5 4 3 8 8 C 1.40960 * 107.44687 * 359.73975 * 4 3 2 9 9 C 1.36768 * 125.06190 * 179.79572 * 2 1 3 10 10 C 1.47208 * 126.63618 * 0.02686 * 9 2 1 11 11 O 1.21618 * 120.00222 * 4.48663 * 10 9 2 12 12 N 1.34777 * 119.99988 * 184.48314 * 10 9 2 13 13 C 1.47579 * 134.49634 * 174.61023 * 12 10 9 14 14 C 1.53944 * 86.12130 * 155.35616 * 13 12 10 15 15 C 1.50701 * 113.74126 * 137.94575 * 14 13 12 16 16 H 1.07993 * 120.00088 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99898 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00331 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00148 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46888 * 90.00261 * 19 17 15 21 21 H 1.48500 * 109.47061 * 210.00671 * 19 17 15 22 22 H 1.48501 * 109.46905 * 330.00544 * 19 17 15 23 23 C 1.47587 * 134.49202 * 354.60612 * 12 10 9 24 24 H 1.08992 * 109.47370 * 275.00327 * 1 2 3 25 25 H 1.08998 * 109.46935 * 35.00559 * 1 2 3 26 26 H 1.08999 * 109.46785 * 155.00344 * 1 2 3 27 27 H 0.96700 * 117.00081 * 180.02562 * 7 5 4 28 28 H 1.07996 * 127.27407 * 179.97438 * 8 4 3 29 29 H 1.08999 * 113.77206 * 41.05290 * 13 12 10 30 30 H 1.09007 * 113.76797 * 269.66107 * 13 12 10 31 31 H 1.08995 * 113.74150 * 269.25881 * 14 13 12 32 32 H 0.97001 * 120.00304 * 180.02562 * 18 17 15 33 33 H 1.08999 * 113.76610 * 90.33704 * 23 12 10 34 34 H 1.09002 * 113.76727 * 318.94036 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2029 1.0515 0.0000 4 6 3.4804 0.7195 -0.0053 5 6 4.6252 1.6516 -0.0118 6 8 5.7605 1.2192 -0.0159 7 8 4.4109 2.9816 -0.0134 8 6 3.5512 -0.6883 -0.0030 9 6 2.2506 -1.1195 0.0040 10 6 1.7884 -2.5171 0.0084 11 8 0.6006 -2.7650 -0.0736 12 7 2.6815 -3.5220 0.1033 13 6 2.5785 -4.9882 0.2357 14 6 3.9811 -5.0390 -0.3967 15 6 4.9064 -6.0321 0.2581 16 1 4.5594 -6.6256 1.0909 17 6 6.1955 -6.1837 -0.2068 18 7 6.6179 -5.4613 -1.2214 19 14 7.3422 -7.4152 0.6044 20 1 7.2095 -8.7325 -0.0682 21 1 8.7437 -6.9383 0.4870 22 1 6.9849 -7.5537 2.0391 23 6 4.1553 -3.5980 0.1164 24 1 -0.3634 0.0896 1.0237 25 1 -0.3633 0.8417 -0.5895 26 1 -0.3633 -0.9314 -0.4343 27 1 5.1917 3.5521 -0.0181 28 1 4.4423 -1.2984 -0.0064 29 1 1.8003 -5.4319 -0.3852 30 1 2.5495 -5.3351 1.2687 31 1 3.9698 -5.1194 -1.4836 32 1 7.5248 -5.5682 -1.5487 33 1 4.5895 -3.5364 1.1143 34 1 4.6360 -2.9317 -0.5999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594564243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:44 Heat of formation + Delta-G solvation = -26.693779 kcal Electronic energy + Delta-G solvation = -21309.375604 eV Core-core repulsion = 17823.914817 eV Total energy + Delta-G solvation = -3485.460787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.97334 -41.09357 -40.85054 -38.71546 -37.16962 -34.83004 -34.49996 -32.84632 -30.62449 -28.98380 -27.17009 -27.00032 -25.30097 -24.02877 -22.28254 -21.53313 -20.46661 -18.99656 -18.76269 -18.42013 -17.77346 -17.59708 -17.33939 -16.66285 -16.46932 -16.16382 -16.01664 -15.33780 -14.85766 -14.50348 -14.31102 -13.94983 -13.80747 -13.46082 -13.31709 -13.12975 -12.76215 -12.66249 -12.60224 -12.42248 -12.18012 -12.06261 -11.52096 -11.12019 -10.87429 -10.64957 -10.53535 -10.45972 -9.63829 -8.14108 -6.25122 -0.07833 0.15455 0.97633 1.49462 1.52363 1.60759 1.70697 1.82528 2.01333 2.09917 2.48459 3.06860 3.13712 3.18387 3.91324 4.08648 4.21238 4.26591 4.27676 4.36706 4.44498 4.55099 4.63225 4.68267 4.80048 4.88425 4.92460 5.08786 5.25386 5.45104 5.62143 5.83942 6.22993 6.41343 6.63841 6.83939 6.90353 6.93495 7.45353 8.95498 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.004998 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.899067 B = 5600.490667 C = 7028.815644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.236 5.236 3 N -0.206 5.206 4 C -0.035 4.035 5 C 0.586 3.414 6 O -0.529 6.529 7 O -0.492 6.492 8 C -0.129 4.129 9 C -0.037 4.037 10 C 0.601 3.399 11 O -0.573 6.573 12 N -0.624 5.624 13 C 0.119 3.881 14 C 0.022 3.978 15 C -0.528 4.528 16 H 0.070 0.930 17 C 0.022 3.978 18 N -0.918 5.918 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.263 1.263 23 C 0.109 3.891 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.438 0.562 28 H 0.174 0.826 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.883 12.755 3.191 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.029 5.029 3 N -0.048 5.048 4 C -0.188 4.188 5 C 0.428 3.572 6 O -0.417 6.417 7 O -0.305 6.305 8 C -0.158 4.158 9 C -0.162 4.162 10 C 0.390 3.610 11 O -0.456 6.456 12 N -0.355 5.355 13 C -0.002 4.002 14 C 0.003 3.997 15 C -0.566 4.566 16 H 0.088 0.912 17 C -0.178 4.178 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.188 1.188 23 C -0.012 4.012 24 H 0.127 0.873 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.301 0.699 28 H 0.192 0.808 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.330 13.361 3.028 16.575 hybrid contribution 1.872 -0.851 0.119 2.060 sum -7.458 12.510 3.147 14.901 Atomic orbital electron populations 1.22894 0.69369 1.07672 1.06856 1.46234 1.09541 1.00801 1.46321 1.73643 1.02606 1.13053 1.15512 1.20666 0.90387 0.92306 1.15447 1.18938 0.85443 0.81441 0.71407 1.90957 1.23907 1.79272 1.47565 1.84569 1.44955 1.16304 1.84708 1.22368 0.97241 0.93491 1.02656 1.21016 0.91050 0.90003 1.14139 1.16589 0.84677 0.82500 0.77269 1.90685 1.16030 1.84609 1.54252 1.50139 1.09048 1.07767 1.68589 1.23527 0.99031 0.75998 1.01673 1.20433 0.91003 0.92131 0.96183 1.21261 0.96742 1.21936 1.16645 0.91185 1.25727 0.99794 0.97220 0.95079 1.70050 1.18208 1.41194 1.26142 0.85600 0.77857 0.79105 0.79368 1.20350 1.21498 1.18758 1.23787 0.76703 0.99681 1.01078 0.87316 0.85698 0.87048 0.69867 0.80837 0.90737 0.88734 0.94213 0.92721 0.89520 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.35 10.99 127.77 1.40 2.76 16 2 N -0.24 -6.63 3.75 -357.03 -1.34 -7.97 16 3 N -0.21 -5.93 11.97 -48.49 -0.58 -6.51 16 4 C -0.03 -1.08 7.13 42.27 0.30 -0.78 16 5 C 0.59 16.38 8.34 70.30 0.59 16.96 16 6 O -0.53 -17.64 17.70 19.88 0.35 -17.29 16 7 O -0.49 -9.64 13.44 -56.28 -0.76 -10.39 16 8 C -0.13 -4.32 9.83 22.65 0.22 -4.09 16 9 C -0.04 -1.21 6.90 40.44 0.28 -0.93 16 10 C 0.60 22.07 8.03 86.60 0.69 22.77 16 11 O -0.57 -22.01 15.26 -4.09 -0.06 -22.07 16 12 N -0.62 -23.76 3.61 -840.87 -3.03 -26.79 16 13 C 0.12 4.49 8.39 86.48 0.73 5.22 16 14 C 0.02 0.98 3.62 -10.88 -0.04 0.94 16 15 C -0.53 -25.68 8.77 25.60 0.22 -25.46 16 16 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 17 C 0.02 1.13 5.46 84.65 0.46 1.59 16 18 N -0.92 -49.68 13.27 21.45 0.28 -49.40 16 19 Si 0.95 40.24 29.54 68.60 2.03 42.27 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 C 0.11 4.42 6.65 86.48 0.57 5.00 16 24 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.11 2.49 5.93 -2.39 -0.01 2.47 16 27 H 0.44 3.69 9.11 -74.06 -0.67 3.02 16 28 H 0.17 6.01 5.26 -2.91 -0.02 5.99 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.09 3.31 8.09 -2.38 -0.02 3.29 16 31 H 0.04 2.00 8.13 -2.39 -0.02 1.98 16 32 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 33 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 34 H 0.07 2.77 6.46 -2.39 -0.02 2.75 16 Total: -1.00 -64.24 305.57 2.82 -61.42 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.49 Total: 12.77 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 5.44 Total: 23.96 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -4.67 Total: -90.67 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.47 Total: -49.75 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -64.24 2.82 -61.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594564243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.731 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds