Wall clock time and date at job start Tue Mar 31 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38761 * 119.89476 * 2 1 4 4 N 1.31784 * 120.13589 * 179.97438 * 3 2 1 5 5 C 1.33099 * 119.91374 * 0.02562 * 4 3 2 6 6 C 1.47981 * 120.10602 * 180.02562 * 5 4 3 7 7 O 1.21569 * 120.00097 * 174.39447 * 6 5 4 8 8 N 1.34773 * 119.99634 * 354.11284 * 6 5 4 9 9 C 1.36779 * 119.99858 * 175.06213 * 8 6 5 10 10 H 1.07995 * 120.00162 * 143.97611 * 9 8 6 11 11 C 1.39118 * 119.99727 * 323.97941 * 9 8 6 12 12 N 1.31315 * 120.00242 * 339.34326 * 11 9 8 13 13 Si 1.86800 * 119.99752 * 159.35208 * 11 9 8 14 14 H 1.48495 * 109.47449 * 64.99760 * 13 11 9 15 15 H 1.48499 * 109.47318 * 184.99880 * 13 11 9 16 16 H 1.48504 * 109.47072 * 304.99769 * 13 11 9 17 17 C 1.46497 * 120.00340 * 355.06929 * 8 6 5 18 18 C 1.52994 * 109.47645 * 86.61798 * 17 8 6 19 19 C 1.50697 * 109.47136 * 179.97438 * 18 17 8 20 20 O 1.20816 * 120.00293 * 0.02562 * 19 18 17 21 21 O 1.34238 * 119.99648 * 180.02562 * 19 18 17 22 22 C 1.39501 * 119.79102 * 0.27213 * 5 4 3 23 23 N 1.32087 * 119.86678 * 359.43900 * 22 5 4 24 24 H 1.08995 * 109.47157 * 90.00019 * 1 2 3 25 25 H 1.09002 * 109.46806 * 210.00035 * 1 2 3 26 26 H 1.08997 * 109.46867 * 329.99982 * 1 2 3 27 27 H 1.08004 * 119.93031 * 0.02562 * 3 2 1 28 28 H 0.97006 * 120.00199 * 185.04521 * 12 11 9 29 29 H 1.09004 * 109.46963 * 206.62462 * 17 8 6 30 30 H 1.09004 * 109.46704 * 326.61798 * 17 8 6 31 31 H 1.08999 * 109.47294 * 300.00778 * 18 17 8 32 32 H 1.09004 * 109.47070 * 60.00224 * 18 17 8 33 33 H 0.96695 * 116.99608 * 180.02562 * 21 19 18 34 34 H 1.08000 * 120.06880 * 179.70435 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2030 0.0000 4 7 3.5164 1.2085 0.0005 5 6 4.1850 0.0577 0.0005 6 6 5.6648 0.0589 0.0017 7 8 6.2735 -0.9884 0.1045 8 7 6.3377 1.2206 -0.1170 9 6 7.7016 1.2344 -0.0148 10 1 8.2822 1.9088 -0.6266 11 6 8.3409 0.3796 0.8774 12 7 7.6755 -0.1334 1.8866 13 14 10.1460 -0.0382 0.6399 14 1 10.9651 1.1880 0.8147 15 1 10.5552 -1.0539 1.6430 16 1 10.3528 -0.5810 -0.7268 17 6 5.6084 2.4686 -0.3554 18 6 5.1725 3.0682 0.9829 19 6 4.4228 4.3523 0.7376 20 8 4.2541 4.7471 -0.3917 21 8 3.9426 5.0575 1.7740 22 6 3.4864 -1.1498 -0.0058 23 7 2.1655 -1.1455 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6557 2.1367 0.0004 28 1 8.1375 -0.6700 2.5496 29 1 6.2560 3.1741 -0.8760 30 1 4.7287 2.2643 -0.9658 31 1 4.5250 2.3627 1.5035 32 1 6.0522 3.2725 1.5933 33 1 3.4682 5.8743 1.5669 34 1 4.0244 -2.0862 -0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600616244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:19 Heat of formation + Delta-G solvation = -48.547677 kcal Electronic energy + Delta-G solvation = -22193.977458 eV Core-core repulsion = 18707.569015 eV Total energy + Delta-G solvation = -3486.408443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80095 -39.82130 -38.14259 -35.87328 -34.76743 -34.05338 -32.48358 -32.10754 -30.07081 -28.12932 -25.33152 -24.13870 -24.07747 -22.61457 -20.80488 -19.82829 -17.81239 -17.68950 -16.74379 -16.46107 -15.86640 -15.44299 -15.35070 -14.98758 -14.74082 -14.24456 -13.91634 -13.51608 -13.03104 -12.86799 -12.75174 -12.46372 -12.33004 -11.95070 -11.58676 -11.36644 -11.29677 -11.10240 -10.94326 -10.78796 -10.70111 -10.35209 -10.15121 -9.98380 -9.08165 -8.84909 -8.69641 -8.16940 -7.31753 -6.33064 -3.95699 0.96254 1.47878 2.62393 3.23331 3.31664 3.33024 3.42032 3.75117 4.12864 4.34523 4.53195 4.70508 4.73493 4.90830 5.17624 5.19402 5.46151 5.54701 5.57050 5.73530 5.77090 5.81956 5.89384 6.04343 6.10572 6.31958 6.59132 6.64446 6.78366 6.99418 7.40640 7.61057 7.97709 8.15362 8.25276 8.79514 8.98109 9.42171 10.10589 10.73623 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.007560 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.708410 B = 3702.940972 C = 5228.368029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.057 3.943 3 C 0.042 3.958 4 N -0.420 5.420 5 C 0.062 3.938 6 C 0.497 3.503 7 O -0.527 6.527 8 N -0.418 5.418 9 C -0.336 4.336 10 H 0.091 0.909 11 C 0.063 3.937 12 N -0.804 5.804 13 Si 0.921 3.079 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 C 0.124 3.876 18 C -0.110 4.110 19 C 0.488 3.512 20 O -0.524 6.524 21 O -0.524 6.524 22 C 0.093 3.907 23 N -0.444 5.444 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.271 0.729 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 5.726 -0.467 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 C -0.119 4.119 4 N -0.138 5.138 5 C -0.079 4.079 6 C 0.284 3.716 7 O -0.405 6.405 8 N -0.136 5.136 9 C -0.464 4.464 10 H 0.108 0.892 11 C -0.150 4.150 12 N -0.437 5.437 13 Si 0.748 3.252 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.001 4.001 18 C -0.149 4.149 19 C 0.331 3.669 20 O -0.412 6.412 21 O -0.335 6.335 22 C -0.069 4.069 23 N -0.160 5.160 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.177 0.823 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.257 0.743 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.060 4.731 -0.509 11.128 hybrid contribution 0.399 0.493 0.041 0.635 sum -9.661 5.224 -0.468 10.993 Atomic orbital electron populations 1.20598 0.88377 1.03374 1.02912 1.22288 0.98041 0.90051 0.97992 1.23626 0.91446 0.98678 0.98194 1.69110 1.07707 1.28478 1.08526 1.23001 0.98002 0.89809 0.97068 1.17048 0.82887 0.84963 0.86680 1.90625 1.66846 1.30709 1.52363 1.43266 1.06019 1.03371 1.60988 1.19308 0.79980 1.24789 1.22277 0.89175 1.25254 0.99592 0.96273 0.93861 1.69802 1.37217 1.28184 1.08546 0.86113 0.82288 0.78189 0.78641 1.20268 1.20954 1.19634 1.21538 0.97085 0.87365 0.94065 1.21752 1.00078 0.90172 1.02873 1.23918 0.75604 0.85405 0.81987 1.90653 1.56163 1.69963 1.24446 1.84632 1.68712 1.39110 1.41036 1.23653 0.89347 0.99732 0.94161 1.68306 1.08813 1.28983 1.09863 0.90512 0.90576 0.90680 0.82257 0.91900 0.91719 0.88895 0.87612 0.87995 0.74340 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.19 36.01 0.37 -0.59 16 2 C 0.06 0.85 6.79 -82.27 -0.56 0.29 16 3 C 0.04 0.64 10.88 -17.38 -0.19 0.45 16 4 N -0.42 -7.83 4.26 -9.63 -0.04 -7.87 16 5 C 0.06 1.31 6.53 -82.86 -0.54 0.77 16 6 C 0.50 12.61 6.83 -12.27 -0.08 12.53 16 7 O -0.53 -15.08 13.71 5.31 0.07 -15.00 16 8 N -0.42 -10.31 2.56 -115.85 -0.30 -10.61 16 9 C -0.34 -8.81 9.29 -15.02 -0.14 -8.95 16 10 H 0.09 2.24 7.91 -52.49 -0.42 1.82 16 11 C 0.06 1.68 4.32 -17.45 -0.08 1.61 16 12 N -0.80 -22.54 11.29 55.50 0.63 -21.91 16 13 Si 0.92 20.84 29.60 -169.99 -5.03 15.81 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.12 2.56 4.21 -4.05 -0.02 2.55 16 18 C -0.11 -2.04 5.46 -27.89 -0.15 -2.20 16 19 C 0.49 7.93 8.33 36.00 0.30 8.23 16 20 O -0.52 -9.47 16.74 -18.74 -0.31 -9.78 16 21 O -0.52 -6.83 13.42 -39.28 -0.53 -7.36 16 22 C 0.09 1.82 10.77 -16.97 -0.18 1.64 16 23 N -0.44 -7.80 10.41 -8.92 -0.09 -7.89 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.06 1.31 7.97 -51.93 -0.41 0.90 16 30 H 0.09 1.90 5.51 -51.93 -0.29 1.62 16 31 H 0.11 2.07 6.42 -51.93 -0.33 1.74 16 32 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 33 H 0.40 3.21 9.10 45.56 0.41 3.63 16 34 H 0.18 3.40 7.66 -52.49 -0.40 3.00 16 LS Contribution 300.36 15.07 4.53 4.53 Total: -1.00 -32.74 300.36 -5.03 -37.77 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.68 Total: 5.98 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -1.27 Total: 16.34 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.20 Total: -48.28 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.77 Total: -32.14 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.74 -5.03 -37.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600616244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.776 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds