Wall clock time and date at job start Tue Mar 31 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38761 * 119.89476 * 2 1 4 4 N 1.31784 * 120.13589 * 179.97438 * 3 2 1 5 5 C 1.33099 * 119.91374 * 0.02562 * 4 3 2 6 6 C 1.47981 * 120.10602 * 180.02562 * 5 4 3 7 7 O 1.21569 * 120.00097 * 174.39447 * 6 5 4 8 8 N 1.34773 * 119.99634 * 354.11284 * 6 5 4 9 9 C 1.36779 * 119.99858 * 175.06213 * 8 6 5 10 10 H 1.07995 * 120.00162 * 143.97611 * 9 8 6 11 11 C 1.39118 * 119.99727 * 323.97941 * 9 8 6 12 12 N 1.31315 * 120.00242 * 339.34326 * 11 9 8 13 13 Si 1.86800 * 119.99752 * 159.35208 * 11 9 8 14 14 H 1.48495 * 109.47449 * 64.99760 * 13 11 9 15 15 H 1.48499 * 109.47318 * 184.99880 * 13 11 9 16 16 H 1.48504 * 109.47072 * 304.99769 * 13 11 9 17 17 C 1.46497 * 120.00340 * 355.06929 * 8 6 5 18 18 C 1.52994 * 109.47645 * 86.61798 * 17 8 6 19 19 C 1.50697 * 109.47136 * 179.97438 * 18 17 8 20 20 O 1.20816 * 120.00293 * 0.02562 * 19 18 17 21 21 O 1.34238 * 119.99648 * 180.02562 * 19 18 17 22 22 C 1.39501 * 119.79102 * 0.27213 * 5 4 3 23 23 N 1.32087 * 119.86678 * 359.43900 * 22 5 4 24 24 H 1.08995 * 109.47157 * 90.00019 * 1 2 3 25 25 H 1.09002 * 109.46806 * 210.00035 * 1 2 3 26 26 H 1.08997 * 109.46867 * 329.99982 * 1 2 3 27 27 H 1.08004 * 119.93031 * 0.02562 * 3 2 1 28 28 H 0.97006 * 120.00199 * 185.04521 * 12 11 9 29 29 H 1.09004 * 109.46963 * 206.62462 * 17 8 6 30 30 H 1.09004 * 109.46704 * 326.61798 * 17 8 6 31 31 H 1.08999 * 109.47294 * 300.00778 * 18 17 8 32 32 H 1.09004 * 109.47070 * 60.00224 * 18 17 8 33 33 H 0.96695 * 116.99608 * 180.02562 * 21 19 18 34 34 H 1.08000 * 120.06880 * 179.70435 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2030 0.0000 4 7 3.5164 1.2085 0.0005 5 6 4.1850 0.0577 0.0005 6 6 5.6648 0.0589 0.0017 7 8 6.2735 -0.9884 0.1045 8 7 6.3377 1.2206 -0.1170 9 6 7.7016 1.2344 -0.0148 10 1 8.2822 1.9088 -0.6266 11 6 8.3409 0.3796 0.8774 12 7 7.6755 -0.1334 1.8866 13 14 10.1460 -0.0382 0.6399 14 1 10.9651 1.1880 0.8147 15 1 10.5552 -1.0539 1.6430 16 1 10.3528 -0.5810 -0.7268 17 6 5.6084 2.4686 -0.3554 18 6 5.1725 3.0682 0.9829 19 6 4.4228 4.3523 0.7376 20 8 4.2541 4.7471 -0.3917 21 8 3.9426 5.0575 1.7740 22 6 3.4864 -1.1498 -0.0058 23 7 2.1655 -1.1455 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6557 2.1367 0.0004 28 1 8.1375 -0.6700 2.5496 29 1 6.2560 3.1741 -0.8760 30 1 4.7287 2.2643 -0.9658 31 1 4.5250 2.3627 1.5035 32 1 6.0522 3.2725 1.5933 33 1 3.4682 5.8743 1.5669 34 1 4.0244 -2.0862 -0.0106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600616244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:19 Heat of formation + Delta-G solvation = -72.146875 kcal Electronic energy + Delta-G solvation = -22195.000796 eV Core-core repulsion = 18707.569015 eV Total energy + Delta-G solvation = -3487.431781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26169 -41.11662 -39.92151 -37.14551 -36.50825 -35.56113 -34.14776 -33.58402 -31.74147 -29.44435 -27.10270 -25.69043 -25.48264 -24.05326 -22.27997 -21.46395 -19.37933 -19.08264 -18.32470 -17.97153 -17.25379 -17.01114 -16.76917 -16.63286 -16.18038 -15.85540 -15.55503 -15.13028 -14.54922 -14.37209 -13.97784 -13.65127 -13.52567 -13.38769 -13.15265 -13.06746 -12.74034 -12.69533 -12.54180 -12.41995 -12.23283 -12.11973 -11.55655 -11.49792 -10.98805 -10.58202 -10.09666 -9.83810 -9.26614 -8.29724 -5.98874 -0.45862 0.07941 1.31763 1.41050 1.50073 1.54251 2.03349 2.29498 2.35723 2.79744 2.96698 3.17117 3.25222 3.32400 3.52563 3.95307 4.12854 4.15196 4.21756 4.28717 4.53436 4.65232 4.79507 4.82205 4.89702 5.00054 5.06949 5.26006 5.41410 5.50043 5.69266 6.05772 6.20856 6.70926 6.87337 7.07852 7.13636 7.51919 8.20051 8.78169 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.007560 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.708410 B = 3702.940972 C = 5228.368029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.082 3.918 3 C 0.047 3.953 4 N -0.422 5.422 5 C 0.030 3.970 6 C 0.492 3.508 7 O -0.573 6.573 8 N -0.433 5.433 9 C -0.365 4.365 10 H 0.095 0.905 11 C 0.020 3.980 12 N -0.846 5.846 13 Si 0.980 3.020 14 H -0.255 1.255 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.129 3.871 18 C -0.102 4.102 19 C 0.506 3.494 20 O -0.540 6.540 21 O -0.513 6.513 22 C 0.087 3.913 23 N -0.455 5.455 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.206 0.794 28 H 0.266 0.734 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.426 0.574 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 7.571 -0.618 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.061 4.061 3 C -0.116 4.116 4 N -0.141 5.141 5 C -0.108 4.108 6 C 0.281 3.719 7 O -0.454 6.454 8 N -0.151 5.151 9 C -0.492 4.492 10 H 0.112 0.888 11 C -0.189 4.189 12 N -0.480 5.480 13 Si 0.804 3.196 14 H -0.180 1.180 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.006 3.994 18 C -0.141 4.141 19 C 0.349 3.651 20 O -0.431 6.431 21 O -0.327 6.327 22 C -0.072 4.072 23 N -0.171 5.171 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.223 0.777 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.288 0.712 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.935 6.616 -0.653 14.543 hybrid contribution 0.888 0.007 0.055 0.890 sum -12.046 6.623 -0.597 13.760 Atomic orbital electron populations 1.20845 0.84103 1.05355 1.04864 1.23277 1.00562 0.88995 0.93277 1.24422 0.90124 1.00801 0.96291 1.68980 1.09598 1.27356 1.08118 1.22334 0.96044 0.91356 1.01054 1.17663 0.84745 0.84511 0.85010 1.90564 1.68637 1.32284 1.53956 1.43412 1.05954 1.04531 1.61239 1.19574 0.81219 1.25600 1.22781 0.88782 1.26064 1.03400 0.95967 0.93455 1.69910 1.38624 1.29854 1.09641 0.85213 0.78176 0.78464 0.77728 1.17971 1.21250 1.20349 1.21543 0.96705 0.85912 0.95270 1.21444 0.99880 0.91595 1.01152 1.23107 0.75235 0.84716 0.82039 1.90660 1.56905 1.70314 1.25186 1.84543 1.68476 1.40278 1.39372 1.23467 0.90393 0.98835 0.94456 1.68433 1.07463 1.30482 1.10703 0.88229 0.90196 0.87183 0.77727 0.92491 0.91903 0.88490 0.88525 0.89265 0.71208 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.19 71.24 0.73 -0.65 16 2 C 0.08 2.12 6.79 42.64 0.29 2.41 16 3 C 0.05 1.26 10.88 84.83 0.92 2.18 16 4 N -0.42 -15.20 4.26 -184.36 -0.78 -15.98 16 5 C 0.03 1.31 6.53 41.84 0.27 1.58 16 6 C 0.49 26.18 6.83 86.83 0.59 26.77 16 7 O -0.57 -34.75 13.71 -3.93 -0.05 -34.81 16 8 N -0.43 -22.21 2.56 -638.70 -1.63 -23.85 16 9 C -0.36 -19.88 9.29 84.13 0.78 -19.09 16 10 H 0.09 4.84 7.91 -2.91 -0.02 4.82 16 11 C 0.02 1.10 4.32 84.98 0.37 1.47 16 12 N -0.85 -49.82 11.29 21.69 0.24 -49.57 16 13 Si 0.98 44.28 29.60 68.60 2.03 46.31 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 C 0.13 5.41 4.21 86.38 0.36 5.78 16 18 C -0.10 -3.75 5.46 29.85 0.16 -3.59 16 19 C 0.51 15.30 8.33 71.24 0.59 15.89 16 20 O -0.54 -18.21 16.74 21.99 0.37 -17.84 16 21 O -0.51 -11.62 13.42 -51.50 -0.69 -12.31 16 22 C 0.09 3.49 10.77 84.96 0.92 4.40 16 23 N -0.46 -15.23 10.41 -182.15 -1.90 -17.13 16 24 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.11 0.95 8.08 -2.39 -0.02 0.93 16 27 H 0.21 3.60 8.06 -2.91 -0.02 3.57 16 28 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 29 H 0.06 2.59 7.97 -2.38 -0.02 2.57 16 30 H 0.10 3.95 5.51 -2.38 -0.01 3.94 16 31 H 0.10 3.76 6.42 -2.39 -0.02 3.74 16 32 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 33 H 0.43 5.03 9.10 -74.06 -0.67 4.36 16 34 H 0.16 6.73 7.66 -2.91 -0.02 6.71 16 Total: -1.00 -75.37 300.36 4.05 -71.32 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.48 Total: 16.71 kcal Atomic # 6 Polarization: 31.17 SS G_CDS: 5.99 Total: 37.15 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -4.07 Total: -106.53 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -0.38 Total: -64.96 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -75.37 4.05 -71.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600616244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.830 kcal (2) G-P(sol) polarization free energy of solvation -75.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds