Wall clock time and date at job start Tue Mar 31 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46864 * 2 1 4 4 C 1.50696 * 109.47402 * 239.99920 * 2 1 3 5 5 H 1.08001 * 119.99928 * 240.00239 * 4 2 1 6 6 C 1.37873 * 120.00150 * 59.99613 * 4 2 1 7 7 N 1.31511 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47328 * 60.00183 * 8 6 4 10 10 H 1.48503 * 109.47139 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47076 * 300.00188 * 8 6 4 12 12 N 1.46503 * 109.46767 * 119.99825 * 2 1 3 13 13 C 1.34775 * 120.00001 * 274.99928 * 12 2 1 14 14 O 1.21570 * 120.00250 * 0.02562 * 13 12 2 15 15 N 1.34782 * 120.00160 * 180.02562 * 13 12 2 16 16 C 1.38908 * 120.00073 * 174.89919 * 15 13 12 17 17 C 1.39289 * 119.52173 * 185.11747 * 16 15 13 18 18 C 1.36917 * 119.38661 * 179.76702 * 17 16 15 19 19 C 1.40348 * 118.47444 * 0.49510 * 18 17 16 20 20 C 1.47461 * 120.48675 * 179.77047 * 19 18 17 21 21 O 1.21506 * 119.99810 * 359.97207 * 20 19 18 22 22 O 1.34746 * 120.00233 * 179.97438 * 20 19 18 23 23 C 1.39622 * 119.02816 * 359.74745 * 19 18 17 24 24 N 1.31662 * 120.49818 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47056 * 60.00595 * 1 2 3 26 26 H 1.08999 * 109.47361 * 300.00157 * 1 2 3 27 27 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00189 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99861 * 95.00683 * 12 2 1 30 30 H 0.97002 * 119.99659 * 354.90007 * 15 13 12 31 31 H 1.08000 * 120.31079 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.76028 * 180.23926 * 18 17 16 33 33 H 0.96697 * 116.99810 * 179.97438 * 22 20 19 34 34 H 1.07997 * 119.74992 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0077 10 1 1.8270 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8574 1.1612 2.4119 15 7 2.5966 -0.6534 3.4576 16 6 2.8301 0.0614 4.6255 17 6 3.3953 -0.5831 5.7234 18 6 3.6287 0.1253 6.8715 19 6 3.2768 1.4836 6.9029 20 6 3.5038 2.2873 8.1182 21 8 3.9983 1.7742 9.1024 22 8 3.1628 3.5908 8.1374 23 6 2.7092 2.0629 5.7664 24 7 2.5073 1.3457 4.6808 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7095 1.1616 -3.4845 29 1 2.2490 -1.6317 1.1527 30 1 2.7572 -1.6098 3.4339 31 1 3.6503 -1.6311 5.6684 32 1 4.0695 -0.3513 7.7347 33 1 3.3304 4.0764 8.9567 34 1 2.4337 3.1070 5.7778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:13 Heat of formation + Delta-G solvation = -69.067233 kcal Electronic energy + Delta-G solvation = -20672.638027 eV Core-core repulsion = 17185.339789 eV Total energy + Delta-G solvation = -3487.298238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03039 -40.04561 -38.81122 -36.27516 -35.34649 -34.37005 -32.73039 -32.39144 -30.64907 -28.65665 -25.31075 -24.90812 -24.04009 -22.13054 -21.12343 -19.94417 -18.70241 -18.16978 -18.00596 -17.39281 -16.15226 -15.84930 -15.66708 -15.27542 -15.01427 -14.68738 -14.09204 -13.87713 -13.63997 -13.33388 -13.15342 -12.84100 -12.43075 -11.85904 -11.76021 -11.15557 -11.06298 -10.96245 -10.88083 -10.58883 -10.34305 -10.25953 -10.09909 -9.92894 -9.09238 -8.94071 -8.59192 -8.43306 -7.92436 -6.15365 -4.25095 0.45563 1.16407 2.39032 2.72747 2.87427 3.23473 3.29234 3.30245 3.56161 4.01434 4.22071 4.33300 4.63254 4.69323 4.70206 5.00335 5.09927 5.17289 5.44435 5.67806 5.90138 6.11075 6.25582 6.60153 6.72856 6.92530 6.95334 7.13304 7.40418 7.55519 7.65851 7.71200 7.87002 8.05626 8.12037 8.66438 8.79842 9.18040 9.43049 10.90633 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044598 B = 0.003118 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.682728 B = 8979.156170 C = 9276.830365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.718 5.718 13 C 0.678 3.322 14 O -0.529 6.529 15 N -0.668 5.668 16 C 0.430 3.570 17 C -0.232 4.232 18 C 0.020 3.980 19 C -0.243 4.243 20 C 0.541 3.459 21 O -0.526 6.526 22 O -0.512 6.512 23 C 0.206 3.794 24 N -0.479 5.479 25 H 0.091 0.909 26 H 0.016 0.984 27 H 0.026 0.974 28 H 0.266 0.734 29 H 0.385 0.615 30 H 0.412 0.588 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.414 0.586 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -2.279 17.694 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.180 3.820 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.371 5.371 13 C 0.377 3.623 14 O -0.400 6.400 15 N -0.314 5.314 16 C 0.195 3.805 17 C -0.256 4.256 18 C -0.005 4.005 19 C -0.249 4.249 20 C 0.386 3.614 21 O -0.416 6.416 22 O -0.323 6.323 23 C 0.044 3.956 24 N -0.194 5.194 25 H 0.110 0.890 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.218 0.782 30 H 0.249 0.751 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.272 0.728 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.622 -1.053 16.495 16.921 hybrid contribution 0.981 -1.549 0.382 1.873 sum 4.603 -2.602 16.878 17.687 Atomic orbital electron populations 1.22111 0.98464 0.99111 1.01043 1.18703 0.90883 0.93782 0.78650 0.93168 1.21155 1.32715 1.13361 0.90233 0.92108 1.24876 0.94781 0.94957 0.99031 1.69891 1.35644 1.22305 1.24094 0.86485 0.79151 0.79542 0.81762 1.20168 1.21090 1.20178 1.45941 1.68733 1.13364 1.09030 1.16323 0.79733 0.85958 0.80291 1.91021 1.52733 1.13273 1.82952 1.43192 1.67069 1.11738 1.09444 1.18631 0.87656 0.88939 0.85275 1.21129 1.08710 1.02236 0.93539 1.21072 0.90822 0.91394 0.97253 1.19884 1.14765 0.95219 0.94990 1.20547 0.73670 0.80031 0.87157 1.90875 1.42227 1.72394 1.36117 1.84577 1.78740 1.23562 1.45455 1.23247 0.87248 0.99812 0.85280 1.68050 1.19919 1.04942 1.26466 0.89036 0.96508 0.95507 0.92425 0.78248 0.75134 0.83781 0.83435 0.72794 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.28 7.02 2.56 -69.08 -0.18 6.84 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.55 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.72 -14.36 5.07 -59.81 -0.30 -14.67 16 13 C 0.68 13.41 8.49 -86.91 -0.74 12.68 16 14 O -0.53 -12.82 14.24 5.30 0.08 -12.74 16 15 N -0.67 -9.58 5.38 -15.83 -0.09 -9.67 16 16 C 0.43 6.16 7.41 -154.94 -1.15 5.01 16 17 C -0.23 -2.39 9.86 -39.67 -0.39 -2.79 16 18 C 0.02 0.21 9.65 -39.27 -0.38 -0.17 16 19 C -0.24 -2.83 5.89 -104.83 -0.62 -3.45 16 20 C 0.54 5.96 8.27 34.49 0.29 6.24 16 21 O -0.53 -6.93 17.20 -19.27 -0.33 -7.26 16 22 O -0.51 -4.19 12.70 -40.62 -0.52 -4.71 16 23 C 0.21 2.74 10.79 -17.11 -0.18 2.55 16 24 N -0.48 -8.03 7.85 -12.06 -0.09 -8.13 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 6.39 8.56 -40.82 -0.35 6.04 16 30 H 0.41 4.04 8.71 -40.82 -0.36 3.69 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.15 1.26 7.73 -52.49 -0.41 0.86 16 33 H 0.41 1.45 9.11 45.56 0.42 1.86 16 34 H 0.17 1.97 7.61 -52.49 -0.40 1.58 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -34.79 306.58 -7.04 -41.83 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -2.61 Total: 8.27 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -3.40 Total: 11.11 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.14 Total: -56.38 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.77 Total: -24.71 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.79 -7.04 -41.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.234 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds