Wall clock time and date at job start Tue Mar 31 2020 00:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46864 * 2 1 4 4 C 1.50696 * 109.47402 * 239.99920 * 2 1 3 5 5 H 1.08001 * 119.99928 * 240.00239 * 4 2 1 6 6 C 1.37873 * 120.00150 * 59.99613 * 4 2 1 7 7 N 1.31511 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47328 * 60.00183 * 8 6 4 10 10 H 1.48503 * 109.47139 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47076 * 300.00188 * 8 6 4 12 12 N 1.46503 * 109.46767 * 119.99825 * 2 1 3 13 13 C 1.34775 * 120.00001 * 274.99928 * 12 2 1 14 14 O 1.21570 * 120.00250 * 0.02562 * 13 12 2 15 15 N 1.34782 * 120.00160 * 180.02562 * 13 12 2 16 16 C 1.38908 * 120.00073 * 174.89919 * 15 13 12 17 17 C 1.39289 * 119.52173 * 185.11747 * 16 15 13 18 18 C 1.36917 * 119.38661 * 179.76702 * 17 16 15 19 19 C 1.40348 * 118.47444 * 0.49510 * 18 17 16 20 20 C 1.47461 * 120.48675 * 179.77047 * 19 18 17 21 21 O 1.21506 * 119.99810 * 359.97207 * 20 19 18 22 22 O 1.34746 * 120.00233 * 179.97438 * 20 19 18 23 23 C 1.39622 * 119.02816 * 359.74745 * 19 18 17 24 24 N 1.31662 * 120.49818 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47056 * 60.00595 * 1 2 3 26 26 H 1.08999 * 109.47361 * 300.00157 * 1 2 3 27 27 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 28 28 H 0.97006 * 120.00189 * 179.97438 * 7 6 4 29 29 H 0.97000 * 119.99861 * 95.00683 * 12 2 1 30 30 H 0.97002 * 119.99659 * 354.90007 * 15 13 12 31 31 H 1.08000 * 120.31079 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.76028 * 180.23926 * 18 17 16 33 33 H 0.96697 * 116.99810 * 179.97438 * 22 20 19 34 34 H 1.07997 * 119.74992 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0077 10 1 1.8270 -0.4200 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8574 1.1612 2.4119 15 7 2.5966 -0.6534 3.4576 16 6 2.8301 0.0614 4.6255 17 6 3.3953 -0.5831 5.7234 18 6 3.6287 0.1253 6.8715 19 6 3.2768 1.4836 6.9029 20 6 3.5038 2.2873 8.1182 21 8 3.9983 1.7742 9.1024 22 8 3.1628 3.5908 8.1374 23 6 2.7092 2.0629 5.7664 24 7 2.5073 1.3457 4.6808 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7095 1.1616 -3.4845 29 1 2.2490 -1.6317 1.1527 30 1 2.7572 -1.6098 3.4339 31 1 3.6503 -1.6311 5.6684 32 1 4.0695 -0.3513 7.7347 33 1 3.3304 4.0764 8.9567 34 1 2.4337 3.1070 5.7778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:12 Heat of formation + Delta-G solvation = -95.504142 kcal Electronic energy + Delta-G solvation = -20673.784418 eV Core-core repulsion = 17185.339789 eV Total energy + Delta-G solvation = -3488.444628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08908 -41.11738 -40.06422 -37.10274 -36.95175 -35.88173 -34.34000 -33.61125 -31.87494 -30.35590 -27.32661 -25.99918 -25.04724 -23.43806 -22.38362 -21.55746 -20.05942 -19.26095 -19.11408 -18.28559 -17.88081 -16.99175 -16.82949 -16.74172 -16.45840 -15.86075 -15.44601 -15.14124 -14.88786 -14.65100 -14.36037 -14.07449 -13.74907 -13.70440 -12.98423 -12.88761 -12.72656 -12.58943 -12.25901 -12.14112 -11.90794 -11.85970 -11.41072 -11.10364 -11.04724 -10.58774 -10.15868 -9.85544 -9.34745 -8.15933 -6.33524 -0.51650 0.27721 1.45138 1.45687 1.49072 1.52865 1.58350 2.09833 2.22849 2.42796 2.87378 3.11590 3.16037 3.57913 3.77668 3.83127 3.94728 4.33574 4.59256 4.73691 4.80772 4.94791 5.04539 5.10849 5.15222 5.37727 5.56766 5.59386 5.61456 5.67806 5.81705 6.06010 6.11534 6.73791 6.84037 7.00166 7.29561 7.36431 7.70825 8.90429 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044598 B = 0.003118 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.682728 B = 8979.156170 C = 9276.830365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.712 5.712 13 C 0.680 3.320 14 O -0.581 6.581 15 N -0.651 5.651 16 C 0.399 3.601 17 C -0.202 4.202 18 C 0.021 3.979 19 C -0.237 4.237 20 C 0.549 3.451 21 O -0.546 6.546 22 O -0.507 6.507 23 C 0.191 3.809 24 N -0.532 5.532 25 H 0.067 0.933 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.435 0.565 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.435 0.565 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -4.557 18.963 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.187 1.187 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.366 5.366 13 C 0.380 3.620 14 O -0.456 6.456 15 N -0.301 5.301 16 C 0.166 3.834 17 C -0.226 4.226 18 C -0.005 4.005 19 C -0.242 4.242 20 C 0.394 3.606 21 O -0.439 6.439 22 O -0.321 6.321 23 C 0.031 3.969 24 N -0.247 5.247 25 H 0.085 0.915 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.276 0.724 31 H 0.206 0.794 32 H 0.191 0.809 33 H 0.297 0.703 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.913 -3.370 17.846 18.814 hybrid contribution 0.611 -0.743 0.162 0.975 sum 5.525 -4.112 18.008 19.280 Atomic orbital electron populations 1.21923 0.98415 0.99495 0.99492 1.18237 0.90858 0.91653 0.80609 0.98381 1.21510 1.32722 1.13716 0.90578 0.90537 1.25802 0.94869 0.95579 1.02340 1.70054 1.36941 1.23907 1.24705 0.85373 0.78599 0.78715 0.77484 1.18723 1.21378 1.19606 1.45482 1.68948 1.14080 1.08139 1.16419 0.79158 0.85339 0.81116 1.90988 1.54821 1.15717 1.84044 1.42682 1.66648 1.12671 1.08060 1.18958 0.89540 0.88816 0.86121 1.21452 1.05749 1.03896 0.91457 1.21442 0.90194 0.90799 0.98030 1.20077 1.13419 0.96148 0.94576 1.20375 0.73134 0.80639 0.86439 1.90873 1.43296 1.73032 1.36669 1.84543 1.78007 1.22465 1.47036 1.23291 0.88224 1.00075 0.85303 1.67853 1.21520 1.06865 1.28454 0.91460 0.97129 0.93929 0.92534 0.75994 0.72420 0.79441 0.80866 0.70296 0.80649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.29 14.85 2.56 44.24 0.11 14.97 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.12 16 4 C -0.55 -28.29 8.73 25.60 0.22 -28.07 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 8 Si 0.97 41.21 29.54 68.60 2.03 43.23 16 9 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 10 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 N -0.71 -28.49 5.07 -461.42 -2.34 -30.83 16 13 C 0.68 27.23 8.49 179.05 1.52 28.75 16 14 O -0.58 -29.42 14.24 -3.94 -0.06 -29.47 16 15 N -0.65 -17.90 5.38 -322.27 -1.73 -19.64 16 16 C 0.40 10.96 7.41 133.09 0.99 11.95 16 17 C -0.20 -3.51 9.86 22.21 0.22 -3.29 16 18 C 0.02 0.36 9.65 22.47 0.22 0.58 16 19 C -0.24 -5.15 5.89 -20.00 -0.12 -5.26 16 20 C 0.55 11.09 8.27 70.25 0.58 11.67 16 21 O -0.55 -13.21 17.20 19.82 0.34 -12.87 16 22 O -0.51 -7.45 12.70 -56.57 -0.72 -8.17 16 23 C 0.19 5.10 10.79 85.05 0.92 6.01 16 24 N -0.53 -18.08 7.85 -192.06 -1.51 -19.58 16 25 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 29 H 0.40 12.85 8.56 -92.71 -0.79 12.05 16 30 H 0.44 7.40 8.71 -92.71 -0.81 6.60 16 31 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.17 2.24 7.73 -2.91 -0.02 2.22 16 33 H 0.43 2.14 9.11 -74.06 -0.67 1.47 16 34 H 0.18 4.19 7.61 -2.91 -0.02 4.17 16 Total: -1.00 -78.46 306.58 0.94 -77.52 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -1.09 Total: 19.49 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 5.77 Total: 32.40 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -5.34 Total: -122.14 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.43 Total: -50.51 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -78.46 0.94 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.983 kcal (2) G-P(sol) polarization free energy of solvation -78.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds