Wall clock time and date at job start Tue Mar 31 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46971 * 2 1 4 4 C 1.50698 * 109.46919 * 119.99979 * 2 1 3 5 5 H 1.07999 * 120.00221 * 119.99968 * 4 2 1 6 6 C 1.37876 * 120.00019 * 300.00291 * 4 2 1 7 7 N 1.31512 * 120.00295 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47097 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47219 * 119.99758 * 8 6 4 11 11 H 1.48506 * 109.46963 * 239.99860 * 8 6 4 12 12 N 1.46498 * 109.47045 * 239.99859 * 2 1 3 13 13 C 1.34774 * 120.00080 * 85.00315 * 12 2 1 14 14 O 1.21575 * 119.99925 * 359.97438 * 13 12 2 15 15 N 1.34782 * 120.00460 * 179.97438 * 13 12 2 16 16 C 1.38899 * 120.00227 * 185.09370 * 15 13 12 17 17 C 1.39297 * 119.52660 * 174.90945 * 16 15 13 18 18 C 1.36913 * 119.38849 * 180.02562 * 17 16 15 19 19 C 1.40343 * 118.47852 * 359.97438 * 18 17 16 20 20 C 1.47463 * 120.48516 * 180.02562 * 19 18 17 21 21 O 1.21508 * 120.00157 * 359.97022 * 20 19 18 22 22 O 1.34744 * 119.99889 * 179.97438 * 20 19 18 23 23 C 1.39619 * 119.02594 * 359.97438 * 19 18 17 24 24 N 1.31659 * 120.50201 * 0.02763 * 23 19 18 25 25 H 1.08995 * 109.46939 * 299.99875 * 1 2 3 26 26 H 1.09000 * 109.46776 * 59.99991 * 1 2 3 27 27 H 1.08993 * 109.46960 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00081 * 264.99745 * 12 2 1 30 30 H 0.97001 * 119.99563 * 5.10424 * 15 13 12 31 31 H 1.07998 * 120.30177 * 0.02562 * 17 16 15 32 32 H 1.08000 * 120.75226 * 179.97438 * 18 17 16 33 33 H 0.96702 * 116.99729 * 179.97438 * 22 20 19 34 34 H 1.08001 * 119.74550 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1474 -2.2864 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8576 1.1612 -2.4118 15 7 2.5969 -0.6535 -3.4575 16 6 2.8303 0.0612 -4.6254 17 6 3.3950 -0.5834 -5.7235 18 6 3.6243 0.1239 -6.8731 19 6 3.2782 1.4837 -6.9025 20 6 3.5054 2.2874 -8.1178 21 8 3.9960 1.7732 -9.1033 22 8 3.1689 3.5920 -8.1353 23 6 2.7147 2.0640 -5.7645 24 7 2.5114 1.3466 -4.6794 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 2.2491 -1.6318 -1.1526 30 1 2.7574 -1.6099 -3.4338 31 1 3.6497 -1.6315 -5.6685 32 1 4.0615 -0.3537 -7.7375 33 1 3.3371 4.0778 -8.9544 34 1 2.4444 3.1096 -5.7741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:15 Heat of formation + Delta-G solvation = -69.139098 kcal Electronic energy + Delta-G solvation = -20672.805612 eV Core-core repulsion = 17185.504257 eV Total energy + Delta-G solvation = -3487.301354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03057 -40.04569 -38.81138 -36.27498 -35.34816 -34.37050 -32.73084 -32.39232 -30.64942 -28.65798 -25.31410 -24.90886 -24.04015 -22.13149 -21.12455 -19.94534 -18.70254 -18.16998 -18.00671 -17.39315 -16.15606 -15.84944 -15.66901 -15.27717 -15.01621 -14.68598 -14.08748 -13.87808 -13.64065 -13.33130 -13.15234 -12.84106 -12.43877 -11.86457 -11.76425 -11.14431 -11.08799 -10.96247 -10.86877 -10.59187 -10.32046 -10.27019 -10.09938 -9.93023 -9.07758 -8.94115 -8.59893 -8.43352 -7.92470 -6.15852 -4.25318 0.45558 1.16424 2.39014 2.72711 2.87415 3.21571 3.29631 3.31917 3.56116 4.01471 4.21952 4.33115 4.63240 4.69310 4.70196 5.00294 5.09909 5.17060 5.44445 5.67798 5.90137 6.11069 6.25560 6.60101 6.72777 6.92422 6.95260 7.13239 7.40341 7.55751 7.65853 7.71131 7.86915 8.05557 8.11810 8.66592 8.79874 9.18004 9.42938 10.90235 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044588 B = 0.003118 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.817341 B = 8979.068818 C = 9276.276879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.718 5.718 13 C 0.678 3.322 14 O -0.529 6.529 15 N -0.668 5.668 16 C 0.430 3.570 17 C -0.232 4.232 18 C 0.020 3.980 19 C -0.243 4.243 20 C 0.541 3.459 21 O -0.526 6.526 22 O -0.512 6.512 23 C 0.206 3.794 24 N -0.479 5.479 25 H 0.091 0.909 26 H 0.016 0.984 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.385 0.615 30 H 0.412 0.588 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.414 0.586 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -2.292 -17.712 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.371 5.371 13 C 0.377 3.623 14 O -0.400 6.400 15 N -0.314 5.314 16 C 0.195 3.805 17 C -0.256 4.256 18 C -0.005 4.005 19 C -0.249 4.249 20 C 0.386 3.614 21 O -0.416 6.416 22 O -0.323 6.323 23 C 0.044 3.956 24 N -0.194 5.194 25 H 0.110 0.890 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.249 0.751 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.272 0.728 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.649 -1.073 -16.518 16.950 hybrid contribution 0.963 -1.531 -0.375 1.847 sum 4.612 -2.604 -16.893 17.704 Atomic orbital electron populations 1.22108 0.98458 0.99113 1.01046 1.18714 0.90894 0.93798 0.78686 0.93159 1.21228 1.32562 1.13312 0.90200 0.92005 1.24883 0.94800 0.94957 0.99057 1.69910 1.35773 1.22359 1.23874 0.86375 0.78596 0.79479 0.82513 1.19766 1.20847 1.20857 1.45939 1.68729 1.13367 1.09027 1.16325 0.79734 0.85958 0.80292 1.91022 1.52735 1.13269 1.82954 1.43189 1.67064 1.11743 1.09439 1.18633 0.87657 0.88935 0.85279 1.21130 1.08731 1.02258 0.93497 1.21069 0.90801 0.91404 0.97267 1.19882 1.14829 0.95171 0.94976 1.20547 0.73642 0.80046 0.87170 1.90876 1.42306 1.72410 1.36023 1.84577 1.78846 1.23458 1.45451 1.23246 0.87201 0.99846 0.85295 1.68051 1.19905 1.04916 1.26508 0.89036 0.96508 0.95505 0.92544 0.78243 0.75132 0.83782 0.83437 0.72792 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.28 7.00 2.56 -69.08 -0.18 6.82 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.52 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.72 -14.35 5.07 -59.81 -0.30 -14.66 16 13 C 0.68 13.40 8.49 -86.92 -0.74 12.67 16 14 O -0.53 -12.82 14.24 5.30 0.08 -12.74 16 15 N -0.67 -9.58 5.38 -15.83 -0.09 -9.66 16 16 C 0.43 6.15 7.41 -154.94 -1.15 5.01 16 17 C -0.23 -2.39 9.86 -39.67 -0.39 -2.78 16 18 C 0.02 0.21 9.65 -39.27 -0.38 -0.17 16 19 C -0.24 -2.83 5.89 -104.83 -0.62 -3.45 16 20 C 0.54 5.96 8.27 34.49 0.29 6.24 16 21 O -0.53 -6.93 17.20 -19.27 -0.33 -7.26 16 22 O -0.51 -4.19 12.70 -40.61 -0.52 -4.71 16 23 C 0.21 2.74 10.79 -17.11 -0.18 2.55 16 24 N -0.48 -8.03 7.84 -12.06 -0.09 -8.12 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.39 6.39 8.56 -40.82 -0.35 6.04 16 30 H 0.41 4.04 8.71 -40.82 -0.36 3.68 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.15 1.26 7.73 -52.49 -0.41 0.86 16 33 H 0.41 1.45 9.11 45.56 0.42 1.86 16 34 H 0.17 1.97 7.61 -52.49 -0.40 1.57 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -34.81 306.58 -7.04 -41.85 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -2.61 Total: 8.20 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -3.40 Total: 11.11 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.14 Total: -56.33 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.77 Total: -24.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.81 -7.04 -41.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.289 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds