Wall clock time and date at job start Tue Mar 31 2020 00:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46971 * 2 1 4 4 C 1.50698 * 109.46919 * 119.99979 * 2 1 3 5 5 H 1.07999 * 120.00221 * 119.99968 * 4 2 1 6 6 C 1.37876 * 120.00019 * 300.00291 * 4 2 1 7 7 N 1.31512 * 120.00295 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47097 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47219 * 119.99758 * 8 6 4 11 11 H 1.48506 * 109.46963 * 239.99860 * 8 6 4 12 12 N 1.46498 * 109.47045 * 239.99859 * 2 1 3 13 13 C 1.34774 * 120.00080 * 85.00315 * 12 2 1 14 14 O 1.21575 * 119.99925 * 359.97438 * 13 12 2 15 15 N 1.34782 * 120.00460 * 179.97438 * 13 12 2 16 16 C 1.38899 * 120.00227 * 185.09370 * 15 13 12 17 17 C 1.39297 * 119.52660 * 174.90945 * 16 15 13 18 18 C 1.36913 * 119.38849 * 180.02562 * 17 16 15 19 19 C 1.40343 * 118.47852 * 359.97438 * 18 17 16 20 20 C 1.47463 * 120.48516 * 180.02562 * 19 18 17 21 21 O 1.21508 * 120.00157 * 359.97022 * 20 19 18 22 22 O 1.34744 * 119.99889 * 179.97438 * 20 19 18 23 23 C 1.39619 * 119.02594 * 359.97438 * 19 18 17 24 24 N 1.31659 * 120.50201 * 0.02763 * 23 19 18 25 25 H 1.08995 * 109.46939 * 299.99875 * 1 2 3 26 26 H 1.09000 * 109.46776 * 59.99991 * 1 2 3 27 27 H 1.08993 * 109.46960 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00293 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00081 * 264.99745 * 12 2 1 30 30 H 0.97001 * 119.99563 * 5.10424 * 15 13 12 31 31 H 1.07998 * 120.30177 * 0.02562 * 17 16 15 32 32 H 1.08000 * 120.75226 * 179.97438 * 18 17 16 33 33 H 0.96702 * 116.99729 * 179.97438 * 22 20 19 34 34 H 1.08001 * 119.74550 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1474 -2.2864 3.6039 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8576 1.1612 -2.4118 15 7 2.5969 -0.6535 -3.4575 16 6 2.8303 0.0612 -4.6254 17 6 3.3950 -0.5834 -5.7235 18 6 3.6243 0.1239 -6.8731 19 6 3.2782 1.4837 -6.9025 20 6 3.5054 2.2874 -8.1178 21 8 3.9960 1.7732 -9.1033 22 8 3.1689 3.5920 -8.1353 23 6 2.7147 2.0640 -5.7645 24 7 2.5114 1.3466 -4.6794 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 2.2491 -1.6318 -1.1526 30 1 2.7574 -1.6099 -3.4338 31 1 3.6497 -1.6315 -5.6685 32 1 4.0615 -0.3537 -7.7375 33 1 3.3371 4.0778 -8.9544 34 1 2.4444 3.1096 -5.7741 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060128.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:14 Heat of formation + Delta-G solvation = -95.584891 kcal Electronic energy + Delta-G solvation = -20673.952387 eV Core-core repulsion = 17185.504257 eV Total energy + Delta-G solvation = -3488.448130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08876 -41.11693 -40.06368 -37.10252 -36.95237 -35.88147 -34.34007 -33.61098 -31.87469 -30.35609 -27.33002 -25.99921 -25.04688 -23.43883 -22.38393 -21.55719 -20.05909 -19.26157 -19.11383 -18.28567 -17.88717 -16.99198 -16.82876 -16.74233 -16.45725 -15.85639 -15.44450 -15.14072 -14.88764 -14.64994 -14.36657 -14.07434 -13.75476 -13.70940 -12.97387 -12.91288 -12.72729 -12.58951 -12.27312 -12.10430 -11.90687 -11.85947 -11.41168 -11.08224 -11.04431 -10.60627 -10.15815 -9.85439 -9.34687 -8.16310 -6.33584 -0.51613 0.27780 1.45186 1.45638 1.46580 1.53056 1.60385 2.09867 2.22869 2.42518 2.87467 3.11533 3.15936 3.57915 3.77713 3.83170 3.94754 4.33600 4.59317 4.73720 4.80807 4.94817 5.04576 5.10874 5.15265 5.37781 5.56787 5.59812 5.61480 5.67838 5.81704 6.05954 6.11542 6.74215 6.84055 7.00176 7.29588 7.36392 7.70847 8.90472 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044588 B = 0.003118 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.817341 B = 8979.068818 C = 9276.276879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.002 1.002 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.712 5.712 13 C 0.680 3.320 14 O -0.581 6.581 15 N -0.651 5.651 16 C 0.399 3.601 17 C -0.202 4.202 18 C 0.021 3.979 19 C -0.237 4.237 20 C 0.549 3.451 21 O -0.546 6.546 22 O -0.507 6.507 23 C 0.191 3.809 24 N -0.532 5.532 25 H 0.067 0.933 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.405 0.595 30 H 0.435 0.565 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.435 0.565 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 -4.564 -18.995 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.366 5.366 13 C 0.380 3.620 14 O -0.456 6.456 15 N -0.301 5.301 16 C 0.166 3.834 17 C -0.226 4.226 18 C -0.005 4.005 19 C -0.242 4.242 20 C 0.394 3.606 21 O -0.439 6.439 22 O -0.321 6.321 23 C 0.031 3.969 24 N -0.247 5.247 25 H 0.085 0.915 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.240 0.760 30 H 0.276 0.724 31 H 0.206 0.794 32 H 0.191 0.809 33 H 0.297 0.703 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.948 -3.383 -17.882 18.860 hybrid contribution 0.589 -0.725 -0.148 0.946 sum 5.538 -4.108 -18.030 19.304 Atomic orbital electron populations 1.21921 0.98412 0.99506 0.99487 1.18248 0.90866 0.91672 0.80637 0.98361 1.21563 1.32549 1.13615 0.90540 0.90540 1.25805 0.94905 0.95587 1.02351 1.70065 1.37036 1.23945 1.24573 0.85270 0.78040 0.78496 0.78335 1.18170 1.21179 1.20512 1.45480 1.68943 1.14079 1.08137 1.16420 0.79158 0.85339 0.81116 1.90990 1.54822 1.15713 1.84045 1.42680 1.66643 1.12674 1.08056 1.18959 0.89540 0.88810 0.86124 1.21452 1.05769 1.03916 0.91418 1.21439 0.90167 0.90811 0.98049 1.20074 1.13478 0.96105 0.94561 1.20375 0.73104 0.80656 0.86453 1.90874 1.43376 1.73047 1.36576 1.84543 1.78115 1.22360 1.47032 1.23289 0.88176 1.00107 0.85320 1.67854 1.21502 1.06841 1.28497 0.91471 0.97131 0.93913 0.92555 0.75994 0.72420 0.79443 0.80869 0.70295 0.80651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.29 14.80 2.56 44.25 0.11 14.92 16 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 4 C -0.54 -28.12 8.73 25.60 0.22 -27.90 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 8 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 9 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 12 N -0.71 -28.46 5.07 -461.42 -2.34 -30.80 16 13 C 0.68 27.21 8.49 179.05 1.52 28.73 16 14 O -0.58 -29.40 14.24 -3.95 -0.06 -29.45 16 15 N -0.65 -17.89 5.38 -322.27 -1.73 -19.62 16 16 C 0.40 10.95 7.41 133.10 0.99 11.94 16 17 C -0.20 -3.51 9.86 22.21 0.22 -3.29 16 18 C 0.02 0.36 9.65 22.47 0.22 0.58 16 19 C -0.24 -5.14 5.89 -20.00 -0.12 -5.26 16 20 C 0.55 11.08 8.27 70.25 0.58 11.67 16 21 O -0.55 -13.21 17.20 19.81 0.34 -12.87 16 22 O -0.51 -7.45 12.70 -56.54 -0.72 -8.16 16 23 C 0.19 5.09 10.79 85.05 0.92 6.01 16 24 N -0.53 -18.07 7.84 -192.06 -1.51 -19.57 16 25 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.40 12.84 8.56 -92.71 -0.79 12.05 16 30 H 0.44 7.40 8.71 -92.71 -0.81 6.59 16 31 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.17 2.24 7.73 -2.91 -0.02 2.22 16 33 H 0.43 2.14 9.11 -74.06 -0.67 1.47 16 34 H 0.18 4.19 7.61 -2.91 -0.02 4.17 16 Total: -1.00 -78.46 306.58 0.94 -77.52 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -1.09 Total: 19.26 kcal Atomic # 6 Polarization: 26.68 SS G_CDS: 5.78 Total: 32.46 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -5.34 Total: -122.02 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.43 Total: -50.48 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -78.46 0.94 -77.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060128.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.064 kcal (2) G-P(sol) polarization free energy of solvation -78.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds