Wall clock time and date at job start Tue Mar 31 2020 00:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31888 * 118.94480 * 2 1 4 4 C 1.32119 * 120.97930 * 180.02562 * 3 2 1 5 5 C 1.40045 * 118.91046 * 0.02562 * 4 3 2 6 6 C 1.47717 * 120.94437 * 179.72529 * 5 4 3 7 7 O 1.21585 * 119.99735 * 177.27156 * 6 5 4 8 8 N 1.34776 * 120.00043 * 357.27363 * 6 5 4 9 9 C 1.36877 * 119.99776 * 242.73682 * 8 6 5 10 10 H 1.08001 * 119.99869 * 195.08946 * 9 8 6 11 11 C 1.39050 * 119.99977 * 15.08978 * 9 8 6 12 12 N 1.31364 * 120.00277 * 16.37042 * 11 9 8 13 13 Si 1.86801 * 119.99964 * 196.37004 * 11 9 8 14 14 H 1.48501 * 109.47152 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47122 * 119.99723 * 13 11 9 16 16 H 1.48499 * 109.47148 * 240.00213 * 13 11 9 17 17 C 1.46497 * 119.99998 * 62.73502 * 8 6 5 18 18 C 1.50694 * 109.47040 * 90.00502 * 17 8 6 19 19 O 1.20825 * 120.00499 * 359.97438 * 18 17 8 20 20 O 1.34231 * 120.00364 * 180.02562 * 18 17 8 21 21 C 1.39993 * 118.10690 * 359.97438 * 5 4 3 22 22 C 1.50699 * 120.54287 * 180.02562 * 21 5 4 23 23 N 1.31859 * 118.94633 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47563 * 90.00177 * 1 2 3 25 25 H 1.09007 * 109.46901 * 209.99965 * 1 2 3 26 26 H 1.08997 * 109.47193 * 329.99588 * 1 2 3 27 27 H 1.08001 * 120.54677 * 179.97438 * 4 3 2 28 28 H 0.96992 * 120.00310 * 184.96103 * 12 11 9 29 29 H 1.08998 * 109.46991 * 209.99885 * 17 8 6 30 30 H 1.08995 * 109.47250 * 329.99837 * 17 8 6 31 31 H 0.96694 * 117.00777 * 179.97438 * 20 18 17 32 32 H 1.09006 * 109.47085 * 83.54256 * 22 21 5 33 33 H 1.08995 * 109.47494 * 203.54781 * 22 21 5 34 34 H 1.08999 * 109.47420 * 323.55389 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4656 1.2010 -0.0005 5 6 4.1858 -0.0001 -0.0016 6 6 5.6629 -0.0001 -0.0083 7 8 6.2710 -1.0518 0.0410 8 7 6.3365 1.1657 -0.0689 9 6 7.1441 1.4344 -1.1409 10 1 7.8643 2.2375 -1.0865 11 6 7.0374 0.6736 -2.2998 12 7 5.9757 -0.0738 -2.4995 13 14 8.4037 0.7142 -3.5730 14 1 9.4814 1.6267 -3.1136 15 1 8.9556 -0.6529 -3.7505 16 1 7.8606 1.2007 -4.8666 17 6 6.2043 2.1452 1.0124 18 6 7.2559 1.8826 2.0594 19 8 8.0355 0.9705 1.9172 20 8 7.3259 2.6612 3.1505 21 6 3.4658 -1.2007 -0.0015 22 6 4.1851 -2.5250 -0.0021 23 7 2.1452 -1.1539 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 3.9812 2.1501 -0.0009 28 1 5.9328 -0.6591 -3.2717 29 1 6.3349 3.1499 0.6104 30 1 5.2149 2.0593 1.4615 31 1 8.0167 2.4538 3.7944 32 1 4.4605 -2.7893 1.0189 33 1 3.5306 -3.2938 -0.4125 34 1 5.0847 -2.4496 -0.6129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607976460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:12 Heat of formation + Delta-G solvation = -50.204931 kcal Electronic energy + Delta-G solvation = -22376.845554 eV Core-core repulsion = 18890.365246 eV Total energy + Delta-G solvation = -3486.480307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69098 -39.68417 -38.22892 -35.64117 -34.81670 -33.62366 -32.89563 -31.91180 -28.71719 -28.19723 -27.64421 -24.74655 -23.26892 -21.94683 -21.41072 -19.83298 -17.64319 -17.61201 -16.86325 -16.37476 -15.57495 -15.41087 -15.22612 -15.01891 -14.77108 -14.06327 -13.83351 -13.21199 -12.96856 -12.68554 -12.50774 -12.14050 -12.04496 -11.88794 -11.80986 -11.52401 -11.40120 -11.12672 -11.00979 -10.94665 -10.65113 -10.27023 -10.12165 -9.95140 -9.28093 -8.76009 -8.64911 -8.53506 -7.72631 -6.36301 -3.77367 1.14409 1.61227 2.79756 3.20721 3.29712 3.32163 3.36914 3.72167 4.13627 4.30847 4.44145 4.53464 4.68511 5.09177 5.14783 5.44993 5.55147 5.58353 5.67992 5.70607 5.72100 5.80813 6.00036 6.09563 6.21876 6.24157 6.41323 6.78564 6.95319 7.03807 7.37277 7.49542 7.84740 8.44606 8.56593 8.75694 9.01894 9.25724 9.68370 10.77747 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.008078 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.154561 B = 3465.217167 C = 4522.523958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.307 3.693 3 N -0.533 5.533 4 C 0.177 3.823 5 C -0.198 4.198 6 C 0.627 3.373 7 O -0.490 6.490 8 N -0.526 5.526 9 C -0.291 4.291 10 H 0.089 0.911 11 C 0.029 3.971 12 N -0.879 5.879 13 Si 0.923 3.077 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.285 1.285 17 C 0.138 3.862 18 C 0.437 3.563 19 O -0.488 6.488 20 O -0.531 6.531 21 C 0.220 3.780 22 C -0.108 4.108 23 N -0.530 5.530 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.170 0.830 28 H 0.272 0.728 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.397 0.603 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 3.503 6.521 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.040 3.960 3 N -0.248 5.248 4 C 0.011 3.989 5 C -0.207 4.207 6 C 0.416 3.584 7 O -0.362 6.362 8 N -0.254 5.254 9 C -0.416 4.416 10 H 0.107 0.893 11 C -0.173 4.173 12 N -0.520 5.520 13 Si 0.750 3.250 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.212 1.212 17 C 0.010 3.990 18 C 0.275 3.725 19 O -0.372 6.372 20 O -0.342 6.342 21 C 0.074 3.926 22 C -0.165 4.165 23 N -0.246 5.246 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.187 0.813 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.255 0.745 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.947 2.630 6.006 9.552 hybrid contribution 2.118 -0.065 -0.442 2.164 sum -4.829 2.565 5.564 7.801 Atomic orbital electron populations 1.20477 0.86341 1.03504 1.03421 1.23171 0.97847 0.83862 0.91168 1.68160 1.10196 1.30021 1.16418 1.23472 0.88893 0.98390 0.88139 1.22150 0.98412 0.95124 1.04982 1.16819 0.84409 0.83573 0.73555 1.90473 1.70285 1.33490 1.41982 1.42271 1.49293 1.14910 1.18922 1.19290 1.15479 1.18443 0.88424 0.89276 1.24995 0.96809 0.98142 0.97388 1.69295 1.24704 1.27047 1.30941 0.85936 0.81046 0.78180 0.79794 1.19658 1.20787 1.21163 1.20560 0.94836 0.96314 0.87305 1.25447 0.86197 0.79408 0.81437 1.90752 1.40466 1.29911 1.76057 1.84583 1.57544 1.59085 1.33017 1.21827 0.88418 0.95976 0.86422 1.21050 1.01186 0.90467 1.03759 1.68071 1.09690 1.30147 1.16725 0.90077 0.90113 0.90014 0.81287 0.91685 0.86946 0.88938 0.74529 0.90499 0.91758 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.31 36.00 0.37 -0.62 16 2 C 0.31 5.45 7.64 -157.06 -1.20 4.25 16 3 N -0.53 -9.90 10.31 -10.37 -0.11 -10.01 16 4 C 0.18 3.46 9.81 -16.75 -0.16 3.29 16 5 C -0.20 -4.33 5.66 -104.69 -0.59 -4.93 16 6 C 0.63 15.36 4.01 -12.39 -0.05 15.31 16 7 O -0.49 -13.36 13.61 5.29 0.07 -13.29 16 8 N -0.53 -12.30 1.72 -117.22 -0.20 -12.50 16 9 C -0.29 -7.41 9.65 -15.00 -0.14 -7.55 16 10 H 0.09 2.17 7.89 -52.49 -0.41 1.76 16 11 C 0.03 0.77 5.10 -17.45 -0.09 0.68 16 12 N -0.88 -24.01 10.91 55.50 0.61 -23.41 16 13 Si 0.92 21.14 29.59 -169.99 -5.03 16.11 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 17 C 0.14 2.48 5.11 -5.20 -0.03 2.45 16 18 C 0.44 8.02 8.40 36.00 0.30 8.32 16 19 O -0.49 -11.24 17.19 -18.75 -0.32 -11.56 16 20 O -0.53 -7.30 13.42 -39.26 -0.53 -7.83 16 21 C 0.22 4.62 6.87 -81.80 -0.56 4.06 16 22 C -0.11 -2.11 9.04 36.01 0.33 -1.79 16 23 N -0.53 -10.31 10.25 -6.66 -0.07 -10.38 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.17 2.97 6.06 -52.49 -0.32 2.65 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.11 1.70 8.04 -51.93 -0.42 1.29 16 30 H 0.09 1.43 6.08 -51.93 -0.32 1.11 16 31 H 0.40 3.84 9.10 45.56 0.41 4.25 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.12 2.64 5.85 -51.93 -0.30 2.34 16 LS Contribution 301.96 15.07 4.55 4.55 Total: -1.00 -33.86 301.96 -5.46 -39.32 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.60 Total: 5.50 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: -1.83 Total: 23.49 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.23 Total: -56.29 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.78 Total: -32.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.86 -5.46 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607976460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.885 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds