Wall clock time and date at job start Tue Mar 31 2020 00:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31888 * 118.94480 * 2 1 4 4 C 1.32119 * 120.97930 * 180.02562 * 3 2 1 5 5 C 1.40045 * 118.91046 * 0.02562 * 4 3 2 6 6 C 1.47717 * 120.94437 * 179.72529 * 5 4 3 7 7 O 1.21585 * 119.99735 * 177.27156 * 6 5 4 8 8 N 1.34776 * 120.00043 * 357.27363 * 6 5 4 9 9 C 1.36877 * 119.99776 * 242.73682 * 8 6 5 10 10 H 1.08001 * 119.99869 * 195.08946 * 9 8 6 11 11 C 1.39050 * 119.99977 * 15.08978 * 9 8 6 12 12 N 1.31364 * 120.00277 * 16.37042 * 11 9 8 13 13 Si 1.86801 * 119.99964 * 196.37004 * 11 9 8 14 14 H 1.48501 * 109.47152 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47122 * 119.99723 * 13 11 9 16 16 H 1.48499 * 109.47148 * 240.00213 * 13 11 9 17 17 C 1.46497 * 119.99998 * 62.73502 * 8 6 5 18 18 C 1.50694 * 109.47040 * 90.00502 * 17 8 6 19 19 O 1.20825 * 120.00499 * 359.97438 * 18 17 8 20 20 O 1.34231 * 120.00364 * 180.02562 * 18 17 8 21 21 C 1.39993 * 118.10690 * 359.97438 * 5 4 3 22 22 C 1.50699 * 120.54287 * 180.02562 * 21 5 4 23 23 N 1.31859 * 118.94633 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47563 * 90.00177 * 1 2 3 25 25 H 1.09007 * 109.46901 * 209.99965 * 1 2 3 26 26 H 1.08997 * 109.47193 * 329.99588 * 1 2 3 27 27 H 1.08001 * 120.54677 * 179.97438 * 4 3 2 28 28 H 0.96992 * 120.00310 * 184.96103 * 12 11 9 29 29 H 1.08998 * 109.46991 * 209.99885 * 17 8 6 30 30 H 1.08995 * 109.47250 * 329.99837 * 17 8 6 31 31 H 0.96694 * 117.00777 * 179.97438 * 20 18 17 32 32 H 1.09006 * 109.47085 * 83.54256 * 22 21 5 33 33 H 1.08995 * 109.47494 * 203.54781 * 22 21 5 34 34 H 1.08999 * 109.47420 * 323.55389 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1453 1.1541 0.0000 4 6 3.4656 1.2010 -0.0005 5 6 4.1858 -0.0001 -0.0016 6 6 5.6629 -0.0001 -0.0083 7 8 6.2710 -1.0518 0.0410 8 7 6.3365 1.1657 -0.0689 9 6 7.1441 1.4344 -1.1409 10 1 7.8643 2.2375 -1.0865 11 6 7.0374 0.6736 -2.2998 12 7 5.9757 -0.0738 -2.4995 13 14 8.4037 0.7142 -3.5730 14 1 9.4814 1.6267 -3.1136 15 1 8.9556 -0.6529 -3.7505 16 1 7.8606 1.2007 -4.8666 17 6 6.2043 2.1452 1.0124 18 6 7.2559 1.8826 2.0594 19 8 8.0355 0.9705 1.9172 20 8 7.3259 2.6612 3.1505 21 6 3.4658 -1.2007 -0.0015 22 6 4.1851 -2.5250 -0.0021 23 7 2.1452 -1.1539 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 3.9812 2.1501 -0.0009 28 1 5.9328 -0.6591 -3.2717 29 1 6.3349 3.1499 0.6104 30 1 5.2149 2.0593 1.4615 31 1 8.0167 2.4538 3.7944 32 1 4.4605 -2.7893 1.0189 33 1 3.5306 -3.2938 -0.4125 34 1 5.0847 -2.4496 -0.6129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607976460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:11 Heat of formation + Delta-G solvation = -74.415500 kcal Electronic energy + Delta-G solvation = -22377.895403 eV Core-core repulsion = 18890.365246 eV Total energy + Delta-G solvation = -3487.530156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22590 -41.15946 -39.92170 -37.08257 -36.50229 -35.19738 -34.41119 -33.69147 -30.03284 -29.72776 -29.26805 -26.53525 -24.76435 -23.49283 -22.85010 -21.52442 -19.31556 -19.05905 -18.41530 -17.95479 -17.23605 -16.88589 -16.67870 -16.62712 -16.33187 -15.85645 -15.59772 -14.63940 -14.36157 -14.10013 -13.92641 -13.62859 -13.45381 -13.33390 -13.17243 -13.07484 -12.98561 -12.87574 -12.70804 -12.48600 -12.39338 -12.07184 -11.72500 -11.46134 -11.08821 -10.36955 -10.25897 -10.22196 -9.56899 -8.30401 -5.72187 -0.39334 0.06408 1.35611 1.37881 1.45467 1.53290 1.85336 2.09768 2.45133 2.75196 2.95048 3.05488 3.11354 3.25737 3.56879 3.97516 4.04763 4.20451 4.32070 4.48326 4.56890 4.64868 4.69309 4.72374 4.78317 4.93085 5.06029 5.28722 5.42087 5.53485 5.72636 5.89228 6.03145 6.86023 7.07340 7.12465 7.20592 7.46731 7.82720 8.82215 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.008078 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.154561 B = 3465.217167 C = 4522.523958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.306 3.694 3 N -0.533 5.533 4 C 0.187 3.813 5 C -0.227 4.227 6 C 0.628 3.372 7 O -0.534 6.534 8 N -0.544 5.544 9 C -0.293 4.293 10 H 0.096 0.904 11 C -0.022 4.022 12 N -0.905 5.905 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.299 1.299 16 H -0.279 1.279 17 C 0.131 3.869 18 C 0.448 3.552 19 O -0.543 6.543 20 O -0.509 6.509 21 C 0.209 3.791 22 C -0.099 4.099 23 N -0.536 5.536 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.188 0.812 28 H 0.263 0.737 29 H 0.145 0.855 30 H 0.119 0.881 31 H 0.420 0.580 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 5.180 7.320 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 N -0.248 5.248 4 C 0.020 3.980 5 C -0.235 4.235 6 C 0.420 3.580 7 O -0.410 6.410 8 N -0.272 5.272 9 C -0.420 4.420 10 H 0.114 0.886 11 C -0.221 4.221 12 N -0.548 5.548 13 Si 0.802 3.198 14 H -0.185 1.185 15 H -0.226 1.226 16 H -0.205 1.205 17 C 0.004 3.996 18 C 0.289 3.711 19 O -0.432 6.432 20 O -0.322 6.322 21 C 0.063 3.937 22 C -0.156 4.156 23 N -0.253 5.253 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.204 0.796 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.137 0.863 31 H 0.281 0.719 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.572 4.375 6.855 11.815 hybrid contribution 2.526 -0.518 -0.531 2.633 sum -6.046 3.857 6.324 9.561 Atomic orbital electron populations 1.20700 0.82417 1.05413 1.04939 1.24286 1.00103 0.83150 0.88451 1.68330 1.09462 1.30259 1.16775 1.23741 0.89364 0.98254 0.86595 1.22002 0.97085 0.96499 1.07940 1.17275 0.85524 0.83337 0.71868 1.90447 1.71434 1.35030 1.44090 1.42388 1.49462 1.15690 1.19639 1.19568 1.15549 1.18103 0.88778 0.88628 1.25725 0.98444 0.98562 0.99396 1.69422 1.26052 1.28168 1.31155 0.85117 0.79202 0.77186 0.78279 1.18503 1.22619 1.20493 1.20936 0.96026 0.96498 0.86110 1.25314 0.85175 0.78522 0.82086 1.90752 1.42635 1.32359 1.77467 1.84503 1.58182 1.57362 1.32141 1.22029 0.89330 0.96138 0.86195 1.20896 1.00063 0.90923 1.03708 1.68195 1.08675 1.30979 1.17412 0.88468 0.88452 0.87889 0.79556 0.92687 0.83772 0.86311 0.71949 0.89642 0.89817 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.31 71.24 0.73 -0.90 16 2 C 0.31 10.12 7.64 138.70 1.06 11.18 16 3 N -0.53 -18.53 10.31 -186.73 -1.93 -20.45 16 4 C 0.19 7.02 9.81 85.09 0.83 7.85 16 5 C -0.23 -9.90 5.66 -19.91 -0.11 -10.02 16 6 C 0.63 31.30 4.01 86.75 0.35 31.65 16 7 O -0.53 -30.37 13.61 -3.98 -0.05 -30.42 16 8 N -0.54 -25.31 1.72 -643.05 -1.10 -26.41 16 9 C -0.29 -14.97 9.65 84.10 0.81 -14.16 16 10 H 0.10 4.61 7.89 -2.91 -0.02 4.58 16 11 C -0.02 -1.19 5.10 84.96 0.43 -0.76 16 12 N -0.91 -50.80 10.91 21.68 0.24 -50.57 16 13 Si 0.98 44.12 29.59 68.60 2.03 46.15 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 C 0.13 4.44 5.11 85.63 0.44 4.88 16 18 C 0.45 15.81 8.40 71.23 0.60 16.40 16 19 O -0.54 -25.11 17.19 21.97 0.38 -24.73 16 20 O -0.51 -12.56 13.42 -51.42 -0.69 -13.25 16 21 C 0.21 8.77 6.87 42.94 0.29 9.06 16 22 C -0.10 -3.96 9.04 71.24 0.64 -3.32 16 23 N -0.54 -20.05 10.25 -174.98 -1.79 -21.85 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.19 6.15 6.06 -2.91 -0.02 6.13 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.14 3.95 8.04 -2.39 -0.02 3.93 16 30 H 0.12 3.39 6.08 -2.39 -0.01 3.37 16 31 H 0.42 6.91 9.10 -74.06 -0.67 6.24 16 32 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.08 3.95 5.85 -2.39 -0.01 3.93 16 Total: -1.00 -75.26 301.96 3.65 -71.61 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.49 Total: 18.05 kcal Atomic # 6 Polarization: 45.79 SS G_CDS: 6.08 Total: 51.88 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -4.59 Total: -119.28 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -0.37 Total: -68.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.26 3.65 -71.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607976460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.807 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds