Wall clock time and date at job start Tue Mar 31 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46855 * 2 1 4 4 C 1.33303 * 119.99585 * 274.41319 * 3 2 1 5 5 H 1.07997 * 119.99527 * 186.08938 * 4 3 2 6 6 C 1.46785 * 120.00309 * 5.81267 * 4 3 2 7 7 N 1.29317 * 119.99598 * 13.15899 * 6 4 3 8 8 Si 1.86798 * 120.00234 * 193.15226 * 6 4 3 9 9 H 1.48505 * 109.46786 * 60.00224 * 8 6 4 10 10 H 1.48497 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47327 * 300.00482 * 8 6 4 12 12 C 1.34772 * 120.00213 * 94.41823 * 3 2 1 13 13 O 1.21525 * 120.00472 * 175.33605 * 12 3 2 14 14 C 1.47257 * 119.99787 * 355.34155 * 12 3 2 15 15 C 1.39842 * 120.22084 * 60.03910 * 14 12 3 16 16 C 1.37693 * 119.91641 * 179.97438 * 15 14 12 17 17 C 1.38661 * 120.37002 * 359.97438 * 16 15 14 18 18 N 1.48018 * 119.77839 * 180.02562 * 17 16 15 19 19 O 1.31700 * 119.99990 * 359.97438 * 18 17 16 20 20 O 1.31699 * 120.00033 * 179.97438 * 18 17 16 21 21 C 1.37945 * 120.44872 * 359.97438 * 17 16 15 22 22 C 1.38967 * 120.06559 * 359.79339 * 21 17 16 23 23 N 1.38795 * 120.18104 * 180.25233 * 22 21 17 24 24 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47429 * 300.00038 * 1 2 3 26 26 H 1.09003 * 109.46747 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47179 * 239.99224 * 2 1 3 28 28 H 1.09003 * 109.46521 * 120.00031 * 2 1 3 29 29 H 0.97004 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.04262 * 0.02562 * 15 14 12 31 31 H 1.07999 * 119.81773 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.96842 * 180.02562 * 21 17 16 33 33 H 0.97005 * 120.00192 * 185.39809 * 23 22 21 34 34 H 0.97003 * 120.00631 * 5.40113 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1567 2.0392 -1.1511 5 1 2.6082 3.0202 -1.1613 6 6 1.7009 1.4278 -2.4053 7 7 0.9440 0.3798 -2.3760 8 14 2.2143 2.1638 -4.0437 9 1 3.6952 2.1446 -4.1526 10 1 1.6257 1.3673 -5.1502 11 1 1.7297 3.5647 -4.1306 12 6 2.3277 1.9866 1.1637 13 8 2.8123 3.1011 1.1589 14 6 2.0786 1.2976 2.4410 15 6 2.7001 0.0750 2.7142 16 6 2.4631 -0.5636 3.9108 17 6 1.6110 -0.0010 4.8490 18 7 1.3661 -0.6985 6.1313 19 8 1.9563 -1.8498 6.3779 20 8 0.5580 -0.1679 7.0257 21 6 0.9908 1.2049 4.5958 22 6 1.2206 1.8676 3.3961 23 7 0.6020 3.0836 3.1410 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.6425 -0.0240 -3.2049 30 1 3.3657 -0.3674 1.9878 31 1 2.9442 -1.5075 4.1203 32 1 0.3290 1.6362 5.3321 33 1 0.7014 3.5058 2.2734 34 1 0.0701 3.5113 3.8304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630960147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:31 Heat of formation + Delta-G solvation = 41.725510 kcal Electronic energy + Delta-G solvation = -21846.645258 eV Core-core repulsion = 18364.151354 eV Total energy + Delta-G solvation = -3482.493904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.31542 -38.85885 -37.65200 -35.49170 -34.53412 -34.09762 -32.51988 -31.40353 -29.72506 -28.90570 -27.00077 -24.83127 -23.11097 -22.23059 -22.04101 -19.79093 -18.50759 -17.97524 -17.36072 -16.80250 -16.64965 -15.73138 -15.59201 -15.33848 -14.58180 -14.27511 -13.96632 -13.68162 -13.56702 -13.09333 -13.07120 -12.39334 -12.06067 -11.79552 -11.44081 -11.32969 -11.10075 -11.01592 -10.91282 -10.87389 -10.63522 -10.48406 -10.42152 -10.24063 -9.29765 -9.07713 -8.62577 -8.30853 -7.60595 -6.84420 -3.92392 -0.52004 1.27761 1.40352 1.48374 2.86269 2.97809 3.00508 3.35324 3.69842 3.81539 3.91130 4.48350 4.60777 4.71039 4.95095 5.16414 5.17540 5.28680 5.58322 5.84683 5.92793 5.98636 6.07754 6.28610 6.39262 6.44990 6.56810 6.64700 6.77695 7.04192 7.10629 7.41127 7.47277 7.67545 7.86582 8.09813 8.78356 9.04652 9.73831 10.03993 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004777 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.016377 B = 5860.126232 C = 6204.790266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.101 3.899 3 N -0.385 5.385 4 C -0.325 4.325 5 H 0.116 0.884 6 C 0.036 3.964 7 N -0.818 5.818 8 Si 0.937 3.063 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.425 3.575 13 O -0.598 6.598 14 C -0.091 4.091 15 C -0.067 4.067 16 C -0.108 4.108 17 C 0.029 3.971 18 N -0.007 5.007 19 O -0.190 6.190 20 O -0.195 6.195 21 C -0.147 4.147 22 C 0.247 3.753 23 N -0.852 5.852 24 H 0.039 0.961 25 H 0.018 0.982 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.281 0.719 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.415 0.585 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -1.477 3.350 3.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 N -0.096 5.096 4 C -0.454 4.454 5 H 0.134 0.866 6 C -0.177 4.177 7 N -0.452 5.452 8 Si 0.762 3.238 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.192 1.192 12 C 0.217 3.783 13 O -0.487 6.487 14 C -0.100 4.100 15 C -0.088 4.088 16 C -0.130 4.130 17 C -0.059 4.059 18 N 0.466 4.534 19 O -0.380 6.380 20 O -0.384 6.384 21 C -0.172 4.172 22 C 0.137 3.863 23 N -0.390 5.390 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.284 -0.829 2.611 3.025 hybrid contribution -0.247 0.150 -0.355 0.458 sum -1.532 -0.679 2.255 2.809 Atomic orbital electron populations 1.22180 0.96013 1.00215 1.01754 1.21992 0.95505 0.83150 1.01502 1.42902 1.50252 1.11389 1.05101 1.20818 1.38640 1.03672 0.82300 0.86632 1.26973 0.94531 0.95642 1.00554 1.69187 1.26613 1.19581 1.29818 0.85799 0.79769 0.79416 0.78780 1.19154 1.20496 1.19182 1.17198 0.91306 0.87412 0.82392 1.90619 1.51465 1.20671 1.85985 1.20272 0.97407 0.95741 0.96609 1.21083 0.98732 0.93472 0.95494 1.20672 0.98159 1.01568 0.92573 1.19881 1.06474 0.95723 0.83784 1.50476 0.98413 1.01343 1.03185 1.96234 1.50541 1.05135 1.86080 1.96229 1.32122 1.69043 1.41045 1.20120 1.04284 0.94646 0.98159 1.17232 0.90754 0.87045 0.91315 1.42327 1.56087 1.20972 1.19591 0.94181 0.96242 0.88552 0.87632 0.93419 0.90588 0.83439 0.83402 0.83414 0.75248 0.77299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.50 37.16 0.35 -2.42 16 2 C 0.10 2.01 5.21 -4.04 -0.02 1.99 16 3 N -0.39 -8.62 2.54 -114.54 -0.29 -8.92 16 4 C -0.32 -7.81 9.72 -13.46 -0.13 -7.94 16 5 H 0.12 2.97 7.23 -52.49 -0.38 2.59 16 6 C 0.04 0.78 5.39 -15.16 -0.08 0.70 16 7 N -0.82 -17.49 7.47 56.00 0.42 -17.07 16 8 Si 0.94 17.52 29.66 -169.99 -5.04 12.48 16 9 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 10 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 11 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 12 C 0.42 9.39 6.15 -12.60 -0.08 9.31 16 13 O -0.60 -15.12 15.89 5.34 0.08 -15.04 16 14 C -0.09 -1.66 4.97 -104.79 -0.52 -2.19 16 15 C -0.07 -1.06 7.59 -39.18 -0.30 -1.36 16 16 C -0.11 -1.60 9.55 -39.62 -0.38 -1.98 16 17 C 0.03 0.47 6.88 -79.90 -0.55 -0.08 16 18 N -0.01 -0.12 4.98 33.99 0.17 0.05 16 19 O -0.19 -3.37 19.13 -31.57 -0.60 -3.98 16 20 O -0.20 -3.49 19.12 -31.57 -0.60 -4.09 16 21 C -0.15 -2.23 9.41 -39.42 -0.37 -2.60 16 22 C 0.25 4.06 6.77 -83.60 -0.57 3.49 16 23 N -0.85 -12.47 8.94 32.56 0.29 -12.18 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.10 2.07 5.88 -51.93 -0.31 1.76 16 27 H 0.11 2.22 5.98 -51.93 -0.31 1.91 16 28 H 0.05 0.84 4.27 -51.93 -0.22 0.61 16 29 H 0.28 5.64 8.26 -40.82 -0.34 5.30 16 30 H 0.15 2.13 7.33 -52.49 -0.38 1.74 16 31 H 0.15 1.91 7.56 -52.49 -0.40 1.52 16 32 H 0.15 1.98 7.55 -52.49 -0.40 1.58 16 33 H 0.42 6.90 7.19 -40.82 -0.29 6.61 16 34 H 0.40 4.40 8.84 -40.82 -0.36 4.04 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -26.72 296.56 -6.78 -33.49 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -3.03 Total: 13.85 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.64 Total: -3.07 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.59 Total: -38.12 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.12 Total: -23.11 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.04 Total: 12.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.72 -6.78 -33.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630960147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.219 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds