Wall clock time and date at job start Tue Mar 31 2020 00:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46855 * 2 1 4 4 C 1.33303 * 119.99585 * 274.41319 * 3 2 1 5 5 H 1.07997 * 119.99527 * 186.08938 * 4 3 2 6 6 C 1.46785 * 120.00309 * 5.81267 * 4 3 2 7 7 N 1.29317 * 119.99598 * 13.15899 * 6 4 3 8 8 Si 1.86798 * 120.00234 * 193.15226 * 6 4 3 9 9 H 1.48505 * 109.46786 * 60.00224 * 8 6 4 10 10 H 1.48497 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47327 * 300.00482 * 8 6 4 12 12 C 1.34772 * 120.00213 * 94.41823 * 3 2 1 13 13 O 1.21525 * 120.00472 * 175.33605 * 12 3 2 14 14 C 1.47257 * 119.99787 * 355.34155 * 12 3 2 15 15 C 1.39842 * 120.22084 * 60.03910 * 14 12 3 16 16 C 1.37693 * 119.91641 * 179.97438 * 15 14 12 17 17 C 1.38661 * 120.37002 * 359.97438 * 16 15 14 18 18 N 1.48018 * 119.77839 * 180.02562 * 17 16 15 19 19 O 1.31700 * 119.99990 * 359.97438 * 18 17 16 20 20 O 1.31699 * 120.00033 * 179.97438 * 18 17 16 21 21 C 1.37945 * 120.44872 * 359.97438 * 17 16 15 22 22 C 1.38967 * 120.06559 * 359.79339 * 21 17 16 23 23 N 1.38795 * 120.18104 * 180.25233 * 22 21 17 24 24 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47429 * 300.00038 * 1 2 3 26 26 H 1.09003 * 109.46747 * 60.00472 * 1 2 3 27 27 H 1.08998 * 109.47179 * 239.99224 * 2 1 3 28 28 H 1.09003 * 109.46521 * 120.00031 * 2 1 3 29 29 H 0.97004 * 119.99656 * 179.97438 * 7 6 4 30 30 H 1.07996 * 120.04262 * 0.02562 * 15 14 12 31 31 H 1.07999 * 119.81773 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.96842 * 180.02562 * 21 17 16 33 33 H 0.97005 * 120.00192 * 185.39809 * 23 22 21 34 34 H 0.97003 * 120.00631 * 5.40113 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1567 2.0392 -1.1511 5 1 2.6082 3.0202 -1.1613 6 6 1.7009 1.4278 -2.4053 7 7 0.9440 0.3798 -2.3760 8 14 2.2143 2.1638 -4.0437 9 1 3.6952 2.1446 -4.1526 10 1 1.6257 1.3673 -5.1502 11 1 1.7297 3.5647 -4.1306 12 6 2.3277 1.9866 1.1637 13 8 2.8123 3.1011 1.1589 14 6 2.0786 1.2976 2.4410 15 6 2.7001 0.0750 2.7142 16 6 2.4631 -0.5636 3.9108 17 6 1.6110 -0.0010 4.8490 18 7 1.3661 -0.6985 6.1313 19 8 1.9563 -1.8498 6.3779 20 8 0.5580 -0.1679 7.0257 21 6 0.9908 1.2049 4.5958 22 6 1.2206 1.8676 3.3961 23 7 0.6020 3.0836 3.1410 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 0.6425 -0.0240 -3.2049 30 1 3.3657 -0.3674 1.9878 31 1 2.9442 -1.5075 4.1203 32 1 0.3290 1.6362 5.3321 33 1 0.7014 3.5058 2.2734 34 1 0.0701 3.5113 3.8304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630960147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:31 Heat of formation + Delta-G solvation = 26.099078 kcal Electronic energy + Delta-G solvation = -21847.322871 eV Core-core repulsion = 18364.151354 eV Total energy + Delta-G solvation = -3483.171517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72785 -40.35260 -39.09048 -37.15584 -35.86036 -35.47671 -34.15995 -32.81392 -31.31134 -30.18044 -28.44671 -26.42649 -24.54640 -23.62918 -23.48982 -21.30014 -19.83738 -19.33269 -19.01887 -18.35247 -17.94354 -17.10066 -16.98958 -16.86246 -16.13176 -15.72233 -15.29743 -15.10911 -15.05572 -14.67470 -14.42815 -13.88641 -13.64398 -13.25381 -12.96524 -12.79242 -12.60588 -12.47169 -12.28976 -12.18627 -12.11600 -12.07716 -11.88069 -11.78622 -10.89190 -10.58208 -10.29451 -9.94158 -8.86435 -8.47693 -5.72185 -1.87034 -0.04327 0.03741 0.20317 1.33386 1.44806 1.50562 1.85778 2.20548 2.34941 2.67937 2.91253 2.99952 3.42260 3.69233 3.71097 3.89835 3.95559 4.30467 4.42666 4.55132 4.64803 4.76344 4.83130 4.89419 5.02902 5.10946 5.14880 5.29457 5.48326 5.64078 5.80465 5.96157 6.18933 6.42321 6.71759 7.10405 7.40163 8.07182 8.39289 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004777 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.016377 B = 5860.126232 C = 6204.790266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.104 3.896 3 N -0.393 5.393 4 C -0.381 4.381 5 H 0.083 0.917 6 C 0.019 3.981 7 N -0.823 5.823 8 Si 0.991 3.009 9 H -0.272 1.272 10 H -0.264 1.264 11 H -0.275 1.275 12 C 0.423 3.577 13 O -0.641 6.641 14 C -0.115 4.115 15 C -0.057 4.057 16 C -0.099 4.099 17 C 0.030 3.970 18 N -0.009 5.009 19 O -0.186 6.186 20 O -0.199 6.199 21 C -0.133 4.133 22 C 0.246 3.754 23 N -0.845 5.845 24 H 0.059 0.941 25 H 0.017 0.983 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.288 0.712 30 H 0.162 0.838 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.407 0.593 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.965 -2.995 4.586 5.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.018 4.018 3 N -0.104 5.104 4 C -0.510 4.510 5 H 0.101 0.899 6 C -0.194 4.194 7 N -0.456 5.456 8 Si 0.814 3.186 9 H -0.197 1.197 10 H -0.188 1.188 11 H -0.200 1.200 12 C 0.215 3.785 13 O -0.534 6.534 14 C -0.124 4.124 15 C -0.077 4.077 16 C -0.120 4.120 17 C -0.057 4.057 18 N 0.466 4.534 19 O -0.378 6.378 20 O -0.388 6.388 21 C -0.158 4.158 22 C 0.134 3.866 23 N -0.383 5.383 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.237 0.763 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.803 -2.358 3.853 4.863 hybrid contribution -0.122 0.554 -0.442 0.719 sum -1.925 -1.803 3.411 4.312 Atomic orbital electron populations 1.22034 0.95612 1.01005 1.00455 1.22001 0.95758 0.82063 1.01944 1.42911 1.50532 1.12161 1.04808 1.20534 1.42661 1.03632 0.84206 0.89948 1.27467 0.93967 0.95910 1.02049 1.69217 1.26024 1.19632 1.30694 0.85031 0.78950 0.78498 0.76086 1.19728 1.18799 1.19986 1.17690 0.90193 0.87098 0.83487 1.90568 1.53217 1.22588 1.86981 1.20125 0.99551 0.97089 0.95620 1.21201 0.98090 0.92292 0.96126 1.20854 0.97498 1.02201 0.91468 1.20126 1.06387 0.95809 0.83409 1.50629 0.98123 1.01280 1.03400 1.96240 1.50296 1.05190 1.86122 1.96240 1.32233 1.69015 1.41345 1.20271 1.03707 0.94070 0.97764 1.17306 0.90561 0.87457 0.91239 1.42337 1.55795 1.20491 1.19680 0.92177 0.96413 0.90878 0.88982 0.91046 0.89909 0.82080 0.80897 0.81276 0.76307 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.50 71.98 0.68 -4.36 16 2 C 0.10 4.12 5.21 86.38 0.45 4.57 16 3 N -0.39 -18.10 2.54 -634.59 -1.61 -19.71 16 4 C -0.38 -19.26 9.72 86.71 0.84 -18.41 16 5 H 0.08 4.58 7.23 -2.91 -0.02 4.56 16 6 C 0.02 0.83 5.39 87.30 0.47 1.30 16 7 N -0.82 -35.32 7.47 23.26 0.17 -35.15 16 8 Si 0.99 36.54 29.66 68.60 2.03 38.57 16 9 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 10 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 12 C 0.42 19.12 6.15 86.61 0.53 19.66 16 13 O -0.64 -33.83 15.89 -3.79 -0.06 -33.89 16 14 C -0.11 -4.08 4.97 -19.97 -0.10 -4.18 16 15 C -0.06 -1.67 7.59 22.53 0.17 -1.50 16 16 C -0.10 -2.58 9.55 22.24 0.21 -2.36 16 17 C 0.03 0.86 6.88 36.41 0.25 1.11 16 18 N -0.01 -0.28 4.98 -46.39 -0.23 -0.51 16 19 O -0.19 -5.94 19.13 3.51 0.07 -5.87 16 20 O -0.20 -6.45 19.12 3.52 0.07 -6.38 16 21 C -0.13 -3.64 9.41 22.38 0.21 -3.43 16 22 C 0.25 7.66 6.77 38.76 0.26 7.92 16 23 N -0.85 -23.96 8.94 -50.91 -0.46 -24.42 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 3.15 5.88 -2.39 -0.01 3.13 16 27 H 0.09 3.87 5.98 -2.39 -0.01 3.86 16 28 H 0.07 2.40 4.27 -2.39 -0.01 2.39 16 29 H 0.29 11.38 8.26 -92.71 -0.77 10.62 16 30 H 0.16 4.28 7.33 -2.91 -0.02 4.25 16 31 H 0.17 3.70 7.56 -2.91 -0.02 3.68 16 32 H 0.17 3.90 7.55 -2.91 -0.02 3.88 16 33 H 0.41 13.68 7.19 -92.70 -0.67 13.01 16 34 H 0.42 8.48 8.84 -92.71 -0.82 7.66 16 Total: -1.00 -58.52 296.56 3.68 -54.84 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.30 Total: 32.22 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 3.99 Total: 0.30 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.12 Total: -79.79 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: 0.07 Total: -46.14 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Total: -58.52 3.68 -54.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630960147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.938 kcal (2) G-P(sol) polarization free energy of solvation -58.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds