Wall clock time and date at job start Tue Mar 31 2020 00:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38470 * 120.09599 * 2 1 4 4 O 1.35908 * 119.98630 * 359.97438 * 3 2 1 5 5 C 1.38856 * 120.02960 * 180.02562 * 3 2 1 6 6 C 1.38311 * 120.23100 * 359.97438 * 5 3 2 7 7 C 1.37947 * 120.20484 * 359.72524 * 6 5 3 8 8 C 1.39476 * 120.10551 * 179.97438 * 2 1 3 9 9 C 1.48036 * 120.11069 * 0.02689 * 8 2 1 10 10 C 1.39966 * 119.49467 * 309.99471 * 9 8 2 11 11 C 1.36016 * 121.19176 * 180.02562 * 10 9 8 12 12 C 1.41049 * 120.10572 * 359.97438 * 11 10 9 13 13 C 1.40444 * 120.48812 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00052 * 154.64831 * 13 12 11 15 15 C 1.40310 * 120.00473 * 334.64044 * 13 12 11 16 16 N 1.30635 * 119.99506 * 334.62334 * 15 13 12 17 17 Si 1.86802 * 120.00104 * 154.61739 * 15 13 12 18 18 H 1.48500 * 109.46614 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47019 * 300.00011 * 17 15 13 20 20 H 1.48499 * 109.46822 * 60.00363 * 17 15 13 21 21 C 1.46636 * 119.02029 * 0.25953 * 12 11 10 22 22 C 1.43196 * 120.56908 * 179.72425 * 21 12 11 23 23 N 7.03277 * 91.79450 * 201.90512 * 2 1 3 24 24 C 1.39101 * 118.86763 * 359.46113 * 21 12 11 25 25 H 1.08997 * 109.47588 * 270.01929 * 1 2 3 26 26 H 1.09002 * 109.47344 * 30.02807 * 1 2 3 27 27 H 1.09001 * 109.46703 * 150.02163 * 1 2 3 28 28 H 0.96704 * 113.99479 * 89.99458 * 4 3 2 29 29 H 1.08007 * 119.88532 * 179.97438 * 5 3 2 30 30 H 1.08002 * 119.89864 * 180.02562 * 6 5 3 31 31 H 1.07993 * 120.02397 * 180.29634 * 7 6 5 32 32 H 1.07995 * 119.40772 * 0.02753 * 10 9 8 33 33 H 1.07995 * 119.94921 * 179.97438 * 11 10 9 34 34 H 0.97000 * 120.00088 * 354.17692 * 16 15 13 35 35 H 1.08001 * 120.09658 * 180.27154 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1980 0.0000 4 8 1.5235 2.3760 -0.0005 5 6 3.5899 1.1964 -0.0005 6 6 4.2849 0.0006 -0.0005 7 6 3.6029 -1.1985 0.0057 8 6 2.2066 -1.2066 0.0005 9 6 1.4713 -2.4914 0.0005 10 6 0.4490 -2.7004 0.9335 11 6 -0.2485 -3.8677 0.9646 12 6 0.0514 -4.8957 0.0466 13 6 -0.6633 -6.1044 0.0720 14 1 -0.7428 -6.7036 -0.8231 15 6 -1.2740 -6.5337 1.2600 16 7 -0.8095 -6.1351 2.4141 17 14 -2.7512 -7.6750 1.1915 18 1 -3.2073 -7.9776 2.5719 19 1 -3.8505 -7.0172 0.4404 20 1 -2.3703 -8.9370 0.5076 21 6 1.1245 -4.6862 -0.9305 22 6 1.4605 -5.7098 -1.8738 23 7 1.7272 -6.5218 -2.6224 24 6 1.8069 -3.4741 -0.9290 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.3270 2.7170 0.8828 29 1 4.1292 2.1322 -0.0010 30 1 5.3649 0.0056 -0.0005 31 1 4.1485 -2.1304 0.0105 32 1 0.2097 -1.9207 1.6414 33 1 -1.0331 -4.0076 1.6934 34 1 0.0065 -5.6121 2.4540 35 1 2.5978 -3.2969 -1.6428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244959310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:41 Heat of formation + Delta-G solvation = 4.739402 kcal Electronic energy + Delta-G solvation = -20122.335584 eV Core-core repulsion = 17049.087105 eV Total energy + Delta-G solvation = -3073.248479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.76169 -38.05892 -36.46549 -35.26395 -34.48648 -32.49787 -30.65672 -30.07950 -28.62920 -26.68009 -25.44143 -22.68395 -22.32720 -21.13658 -20.51404 -18.50213 -18.12946 -16.77249 -15.71299 -15.58401 -15.11517 -14.87953 -14.65919 -14.12589 -13.66350 -13.17683 -13.05202 -12.87484 -12.65365 -12.50545 -12.14804 -12.03560 -11.90588 -11.77428 -11.58501 -11.37070 -11.23048 -10.91068 -10.83895 -10.60908 -10.27487 -10.08386 -9.82250 -9.41961 -8.60300 -8.29417 -8.04541 -7.77412 -7.51472 -4.91279 1.45184 1.54698 2.04429 2.50485 2.96742 3.04667 3.17130 3.70143 3.77971 3.80894 4.07850 4.30808 4.39172 5.09695 5.12835 5.19317 5.26170 5.37819 5.52828 5.72707 5.78100 5.85820 5.96720 6.06348 6.09009 6.27025 6.49422 6.54152 6.58967 6.63699 6.72649 6.88167 6.95287 7.03826 7.21113 7.33070 7.40055 7.52526 7.66272 7.79474 7.80368 8.21376 8.32163 8.68711 9.52680 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.004657 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.786994 B = 6010.809694 C = 6761.294136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C 0.099 3.901 4 O -0.500 6.500 5 C -0.166 4.166 6 C -0.109 4.109 7 C -0.131 4.131 8 C 0.023 3.977 9 C -0.215 4.215 10 C -0.032 4.032 11 C -0.219 4.219 12 C 0.131 3.869 13 C -0.466 4.466 14 H 0.086 0.914 15 C 0.037 3.963 16 N -0.756 5.756 17 Si 1.066 2.934 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.191 4.191 22 C 0.298 3.702 23 N -0.505 5.505 24 C 0.010 3.990 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.383 0.617 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.307 0.693 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 10.571 2.563 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C 0.055 3.945 4 O -0.309 6.309 5 C -0.184 4.184 6 C -0.127 4.127 7 C -0.149 4.149 8 C 0.023 3.977 9 C -0.217 4.217 10 C -0.051 4.051 11 C -0.238 4.238 12 C 0.125 3.875 13 C -0.491 4.491 14 H 0.104 0.896 15 C -0.190 4.190 16 N -0.376 5.376 17 Si 0.887 3.113 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.196 1.196 21 C -0.196 4.196 22 C -0.012 4.012 23 N -0.184 5.184 24 C -0.011 4.011 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.033 8.508 1.798 8.757 hybrid contribution 1.192 1.294 -0.123 1.764 sum 2.226 9.802 1.675 10.190 Atomic orbital electron populations 1.20736 0.90889 1.03114 1.01823 1.20318 0.96678 0.91691 1.02754 1.18197 0.89679 0.84554 1.02035 1.84789 1.76749 1.36294 1.33056 1.21241 0.93317 0.98418 1.05470 1.20854 0.99384 0.92032 1.00454 1.21361 0.93752 0.97858 1.01922 1.18705 0.92152 0.92002 0.94891 1.17621 1.05305 0.94180 1.04584 1.20409 0.93229 0.96018 0.95418 1.20770 1.04061 0.94178 1.04770 1.18478 0.87394 0.92516 0.89114 1.20905 1.24333 1.04302 0.99608 0.89553 1.27403 1.02168 0.98369 0.91063 1.70403 1.18406 1.21335 1.27435 0.83600 0.74092 0.75720 0.77850 1.19213 1.19288 1.19550 1.16677 1.05600 0.92825 1.04544 1.25727 0.91518 0.92275 0.91657 1.81043 1.12333 1.11336 1.13661 1.20582 0.95044 0.90580 0.94853 0.91839 0.91944 0.90304 0.76212 0.86343 0.86303 0.85982 0.88402 0.86763 0.87810 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 8.21 36.01 0.30 -1.30 16 2 C -0.11 -1.80 5.87 -104.08 -0.61 -2.41 16 3 C 0.10 1.43 6.67 -39.27 -0.26 1.17 16 4 O -0.50 -6.23 12.54 -19.45 -0.24 -6.47 16 5 C -0.17 -2.22 9.98 -39.33 -0.39 -2.61 16 6 C -0.11 -1.46 10.03 -39.66 -0.40 -1.86 16 7 C -0.13 -2.01 9.48 -39.17 -0.37 -2.38 16 8 C 0.02 0.38 5.44 -104.90 -0.57 -0.19 16 9 C -0.22 -4.07 4.74 -104.81 -0.50 -4.56 16 10 C -0.03 -0.61 7.74 -39.73 -0.31 -0.91 16 11 C -0.22 -4.66 7.88 -39.31 -0.31 -4.97 16 12 C 0.13 3.01 5.46 -104.61 -0.57 2.44 16 13 C -0.47 -10.98 8.48 -37.97 -0.32 -11.30 16 14 H 0.09 2.09 7.45 -52.49 -0.39 1.70 16 15 C 0.04 0.82 4.95 -17.28 -0.09 0.73 16 16 N -0.76 -17.27 12.31 55.57 0.68 -16.59 16 17 Si 1.07 19.06 30.01 -169.99 -5.10 13.96 16 18 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.62 7.11 56.52 0.40 -4.21 16 20 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 21 C -0.19 -4.24 5.93 -104.27 -0.62 -4.86 16 22 C 0.30 6.90 14.30 -22.47 -0.32 6.58 16 23 N -0.50 -12.06 18.54 41.84 0.78 -11.28 16 24 C 0.01 0.21 9.18 -38.84 -0.36 -0.15 16 25 H 0.06 0.84 7.46 -51.93 -0.39 0.45 16 26 H 0.06 0.85 7.53 -51.93 -0.39 0.46 16 27 H 0.08 1.28 6.46 -51.93 -0.34 0.94 16 28 H 0.38 2.95 9.06 45.56 0.41 3.36 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.78 8.03 -52.49 -0.42 1.36 16 32 H 0.10 1.69 6.75 -52.49 -0.35 1.33 16 33 H 0.11 2.47 6.48 -52.49 -0.34 2.13 16 34 H 0.31 7.13 6.68 -40.82 -0.27 6.86 16 35 H 0.10 1.86 8.02 -52.49 -0.42 1.44 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -25.89 309.11 -7.47 -33.36 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -2.54 Total: 8.94 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -5.70 Total: -26.58 kcal Atomic # 7 Polarization: -29.33 SS G_CDS: 1.46 Total: -27.87 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.24 Total: -6.47 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.10 Total: 13.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.89 -7.47 -33.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244959310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.099 kcal (2) G-P(sol) polarization free energy of solvation -25.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds