Wall clock time and date at job start Tue Mar 31 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 120.00252 * 2 1 4 4 C 1.52994 * 109.47551 * 124.99543 * 3 2 1 5 5 H 1.08995 * 109.47120 * 305.00021 * 4 3 2 6 6 C 1.52998 * 109.47457 * 184.99415 * 4 3 2 7 7 C 1.53001 * 109.47440 * 174.99849 * 6 4 3 8 8 N 1.46507 * 109.47097 * 64.99737 * 4 3 2 9 9 C 1.34771 * 120.00266 * 204.99883 * 8 4 3 10 10 O 1.21761 * 119.99607 * 0.02562 * 9 8 4 11 11 C 1.46230 * 120.00105 * 179.72330 * 9 8 4 12 12 S 1.75670 * 125.22892 * 0.30460 * 11 9 8 13 13 C 1.75471 * 92.09025 * 179.97438 * 12 11 9 14 14 C 1.32760 * 111.36900 * 0.02562 * 13 12 11 15 15 C 1.39550 * 125.22886 * 179.97438 * 11 9 8 16 16 C 1.40541 * 123.71404 * 359.97438 * 15 11 9 17 17 H 1.07999 * 119.99678 * 23.44068 * 16 15 11 18 18 C 1.40309 * 119.99877 * 203.43502 * 16 15 11 19 19 N 1.30641 * 119.99871 * 9.79631 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 189.79590 * 18 16 15 21 21 H 1.48502 * 109.47271 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47120 * 120.00153 * 20 18 16 23 23 H 1.48500 * 109.46814 * 239.99951 * 20 18 16 24 24 H 1.08001 * 120.00313 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99479 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99479 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47315 * 4.99058 * 3 2 1 28 28 H 1.09008 * 109.46724 * 244.99686 * 3 2 1 29 29 H 1.08996 * 109.47688 * 295.00755 * 6 4 3 30 30 H 1.09004 * 109.46788 * 55.00010 * 6 4 3 31 31 H 1.08996 * 109.47047 * 300.00677 * 7 6 4 32 32 H 1.08995 * 109.46796 * 60.00372 * 7 6 4 33 33 H 1.09002 * 109.47008 * 180.02562 * 7 6 4 34 34 H 0.97000 * 119.99914 * 25.00071 * 8 4 3 35 35 H 1.08009 * 124.31339 * 179.97438 * 13 12 11 36 36 H 1.08004 * 122.79042 * 179.97438 * 14 13 12 37 37 H 0.96997 * 119.99476 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7093 2.7045 1.2551 7 6 4.5857 2.7756 2.5072 8 7 4.0546 0.2968 1.0003 9 6 4.6912 -0.2171 2.0713 10 8 4.4185 0.1797 3.1897 11 6 5.7046 -1.2557 1.8908 12 16 6.2038 -1.9268 0.3460 13 6 7.3583 -3.0024 1.1136 14 6 7.3543 -2.8544 2.4329 15 6 6.4283 -1.8615 2.9187 16 6 6.2697 -1.5416 4.2780 17 1 5.3462 -1.1021 4.6250 18 6 7.3110 -1.7934 5.1841 19 7 8.4900 -2.1433 4.7434 20 14 7.0114 -1.6282 7.0205 21 1 5.6028 -1.2222 7.2577 22 1 7.2698 -2.9316 7.6834 23 1 7.9237 -0.5987 7.5801 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5399 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0894 28 1 2.6214 1.4024 -0.9314 29 1 4.3275 2.8534 0.3699 30 1 2.9469 3.4822 1.3007 31 1 3.9674 2.6267 3.3924 32 1 5.3481 1.9979 2.4616 33 1 5.0657 3.7528 2.5597 34 1 4.2716 -0.0195 0.1093 35 1 7.9909 -3.6970 0.5807 36 1 7.9948 -3.4267 3.0876 37 1 9.2099 -2.3170 5.3698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868018607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:29 Heat of formation + Delta-G solvation = -14.102737 kcal Electronic energy + Delta-G solvation = -19581.405563 eV Core-core repulsion = 16642.783979 eV Total energy + Delta-G solvation = -2938.621584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.103 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -38.87336 -36.54739 -35.51090 -33.37719 -33.03882 -31.59266 -28.98783 -28.35260 -26.02503 -23.54801 -22.30915 -20.71352 -19.81954 -19.49567 -18.74015 -17.48693 -16.03872 -15.50673 -15.22474 -14.96279 -14.54028 -14.04462 -13.68958 -13.30902 -13.18443 -12.60161 -12.45929 -12.22223 -11.98269 -11.85112 -11.47164 -11.37843 -11.23996 -11.08180 -10.94801 -10.81062 -10.60648 -10.40401 -10.28148 -10.09472 -9.63804 -9.24949 -9.21138 -8.36549 -8.07398 -7.46775 -7.12669 -7.02915 -4.50693 2.17712 2.38716 2.95189 3.00456 3.10552 3.14235 3.65782 3.81817 3.87239 4.19329 4.47753 4.90646 5.17656 5.25818 5.29219 5.49666 5.61181 5.65079 5.84635 5.94490 6.03308 6.05390 6.20000 6.36782 6.42459 6.61530 6.74619 6.76024 6.85721 6.87732 7.06080 7.19322 7.22016 7.41393 7.52159 7.73075 8.38912 8.50342 8.63441 8.82784 9.66616 9.88287 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016801 B = 0.005999 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.122722 B = 4666.598633 C = 5513.660810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.102 4.102 4 C 0.155 3.845 5 H 0.083 0.917 6 C -0.130 4.130 7 C -0.144 4.144 8 N -0.743 5.743 9 C 0.603 3.397 10 O -0.558 6.558 11 C -0.429 4.429 12 S -0.054 6.054 13 C -0.207 4.207 14 C -0.099 4.099 15 C 0.140 3.860 16 C -0.377 4.377 17 H 0.113 0.887 18 C 0.067 3.933 19 N -0.779 5.779 20 Si 0.923 3.077 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.388 0.612 35 H 0.136 0.864 36 H 0.145 0.855 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 3.109 -5.822 9.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.157 4.157 3 C -0.139 4.139 4 C 0.050 3.950 5 H 0.101 0.899 6 C -0.169 4.169 7 C -0.201 4.201 8 N -0.396 5.396 9 C 0.399 3.601 10 O -0.441 6.441 11 C -0.548 4.548 12 S 0.201 5.799 13 C -0.341 4.341 14 C -0.131 4.131 15 C 0.129 3.871 16 C -0.408 4.408 17 H 0.130 0.870 18 C -0.154 4.154 19 N -0.404 5.404 20 Si 0.746 3.254 21 H -0.176 1.176 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.221 0.779 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.536 3.592 -6.418 9.839 hybrid contribution 0.738 -0.467 1.577 1.802 sum -5.798 3.125 -4.842 8.175 Atomic orbital electron populations 1.23761 0.95894 1.01442 1.03177 1.22992 0.95906 0.98865 0.97973 1.21084 0.98154 0.95750 0.98944 1.20745 0.88502 0.87671 0.98095 0.89850 1.21954 0.99197 0.96535 0.99235 1.21793 1.00615 1.00531 0.97179 1.45889 1.41995 1.42321 1.09423 1.16751 0.79806 0.80091 0.83424 1.90661 1.66563 1.62839 1.24044 1.22641 1.21330 1.17793 0.93034 1.82704 1.41480 1.42609 1.13096 1.24935 1.05455 1.05491 0.98210 1.21739 0.99062 0.98642 0.93701 1.17938 0.87953 0.88309 0.92906 1.20068 1.00924 1.28939 0.90893 0.86972 1.26371 0.94315 0.91712 1.03011 1.69682 1.01827 1.30669 1.38215 0.85993 0.80667 0.78769 0.79979 1.17612 1.19530 1.19555 0.88766 0.88912 0.87078 0.90605 0.90756 0.92469 0.92336 0.92409 0.91113 0.94616 0.77934 0.84597 0.83810 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.38 14.32 29.01 0.42 -1.97 16 2 C -0.14 -1.82 9.25 -36.03 -0.33 -2.16 16 3 C -0.10 -1.27 5.20 -27.89 -0.15 -1.41 16 4 C 0.16 2.48 2.24 -67.93 -0.15 2.33 16 5 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 6 C -0.13 -1.96 5.61 -26.73 -0.15 -2.11 16 7 C -0.14 -2.60 8.51 37.16 0.32 -2.29 16 8 N -0.74 -13.93 4.72 -55.25 -0.26 -14.19 16 9 C 0.60 14.20 6.33 -13.05 -0.08 14.12 16 10 O -0.56 -14.49 11.58 5.13 0.06 -14.43 16 11 C -0.43 -10.68 6.51 -35.88 -0.23 -10.91 16 12 S -0.05 -1.14 22.25 -107.50 -2.39 -3.53 16 13 C -0.21 -4.50 11.07 28.86 0.32 -4.18 16 14 C -0.10 -2.41 9.04 -39.12 -0.35 -2.76 16 15 C 0.14 3.71 5.67 -106.20 -0.60 3.10 16 16 C -0.38 -10.09 8.52 -37.94 -0.32 -10.41 16 17 H 0.11 3.15 6.03 -52.49 -0.32 2.83 16 18 C 0.07 1.64 5.39 -17.28 -0.09 1.54 16 19 N -0.78 -18.84 10.82 55.57 0.60 -18.24 16 20 Si 0.92 18.56 29.57 -169.99 -5.03 13.53 16 21 H -0.25 -5.24 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 24 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 25 H 0.09 0.95 7.84 -52.49 -0.41 0.53 16 26 H 0.11 1.60 8.03 -52.49 -0.42 1.18 16 27 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 32 H 0.07 1.54 5.64 -51.93 -0.29 1.25 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.39 6.77 7.68 -40.82 -0.31 6.45 16 35 H 0.14 2.51 8.06 -52.48 -0.42 2.09 16 36 H 0.14 3.48 6.41 -52.48 -0.34 3.14 16 37 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -27.67 319.76 -8.59 -36.26 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -4.97 Total: 12.89 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.42 Total: -17.10 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.34 Total: -32.43 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.06 Total: -14.43 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.39 Total: -3.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.67 -8.59 -36.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868018607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.153 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds