Wall clock time and date at job start Tue Mar 31 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29015 * 124.92202 * 2 1 4 4 C 1.31782 * 117.12794 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49784 * 0.02562 * 4 3 2 6 6 C 1.50708 * 126.03625 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47056 * 89.99719 * 6 5 4 8 8 C 1.46905 * 111.00045 * 66.04620 * 7 6 5 9 9 C 1.46898 * 110.99838 * 189.99717 * 7 6 5 10 10 C 1.53005 * 109.46879 * 75.65248 * 9 7 6 11 11 H 1.08996 * 109.46752 * 304.80631 * 10 9 7 12 12 C 1.47193 * 109.47309 * 64.80968 * 10 9 7 13 13 N 6.99579 * 149.71695 * 61.78741 * 2 1 3 14 14 C 1.53000 * 109.47092 * 184.80823 * 10 9 7 15 15 C 1.50705 * 109.47185 * 174.99833 * 14 10 9 16 16 H 1.07992 * 119.99491 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99793 * 179.72739 * 15 14 10 18 18 N 1.31510 * 120.00167 * 0.26971 * 17 15 14 19 19 Si 1.86796 * 119.99858 * 180.27777 * 17 15 14 20 20 H 1.48500 * 109.47320 * 89.99312 * 19 17 15 21 21 H 1.48504 * 109.47059 * 209.99866 * 19 17 15 22 22 H 1.48505 * 109.47097 * 329.99476 * 19 17 15 23 23 S 1.70983 * 124.91026 * 180.31817 * 2 1 3 24 24 H 1.09002 * 109.47105 * 89.96980 * 1 2 3 25 25 H 1.09000 * 109.47286 * 209.97556 * 1 2 3 26 26 H 1.09004 * 109.46757 * 329.97528 * 1 2 3 27 27 H 1.08000 * 122.75511 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46748 * 329.99407 * 6 5 4 29 29 H 1.09000 * 109.46778 * 209.99468 * 6 5 4 30 30 H 1.09002 * 109.46703 * 187.91422 * 8 7 6 31 31 H 1.08997 * 109.46996 * 307.90702 * 8 7 6 32 32 H 1.08995 * 109.47325 * 67.90991 * 8 7 6 33 33 H 1.09000 * 109.47290 * 315.65050 * 9 7 6 34 34 H 1.09004 * 109.47224 * 195.64812 * 9 7 6 35 35 H 1.09001 * 109.47439 * 54.99658 * 14 10 9 36 36 H 1.08994 * 109.47071 * 295.00218 * 14 10 9 37 37 H 0.96994 * 120.00323 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0578 0.0000 4 6 3.5512 0.8791 0.0005 5 6 3.9354 -0.4009 0.0004 6 6 5.3575 -0.8998 0.0015 7 7 5.8183 -1.0623 1.3868 8 6 5.0731 -2.1294 2.0679 9 6 7.2642 -1.3173 1.4341 10 6 8.0208 -0.0128 1.1752 11 1 7.6889 0.4184 0.2309 12 6 7.7527 0.9353 2.2688 13 7 7.5482 1.6677 3.1087 14 6 9.5222 -0.2993 1.1053 15 6 10.2572 0.9615 0.7292 16 1 9.7084 1.8756 0.5576 17 6 11.6307 0.9492 0.6101 18 7 12.2990 -0.1639 0.8196 19 14 12.5425 2.5137 0.1515 20 1 12.9044 3.2557 1.3859 21 1 13.7770 2.1659 -0.5970 22 1 11.6707 3.3634 -0.6991 23 16 2.4856 -1.4021 -0.0078 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.2534 1.6998 0.0002 28 1 5.9953 -0.1802 -0.5116 29 1 5.4060 -1.8598 -0.5125 30 1 5.3330 -2.1355 3.1264 31 1 4.0032 -1.9528 1.9576 32 1 5.3300 -3.0917 1.6251 33 1 7.5294 -2.0487 0.6707 34 1 7.5330 -1.7043 2.4170 35 1 9.7110 -1.0674 0.3554 36 1 9.8713 -0.6471 2.0775 37 1 13.2653 -0.1725 0.7363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076514285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:02 Heat of formation + Delta-G solvation = 63.731968 kcal Electronic energy + Delta-G solvation = -18767.817440 eV Core-core repulsion = 15864.863773 eV Total energy + Delta-G solvation = -2902.953667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -39.83407 -38.13974 -35.81093 -33.70058 -32.66494 -31.62085 -29.66219 -27.48525 -26.06785 -24.56629 -23.54232 -21.78048 -21.53878 -19.33400 -18.14340 -16.85232 -16.53680 -15.64194 -15.30263 -15.03639 -14.71776 -14.56997 -14.32347 -13.69506 -13.39464 -13.02758 -12.91801 -12.76262 -12.48685 -12.39516 -12.04979 -11.97475 -11.73243 -11.53664 -11.23802 -11.21208 -11.04920 -10.72174 -10.53908 -10.21945 -9.73326 -9.56903 -9.35669 -9.23722 -8.85038 -8.47007 -8.30455 -6.10982 -4.14103 0.58107 1.19663 1.61391 2.76023 3.29501 3.36148 3.39438 3.74866 3.85820 3.99941 4.05888 4.40777 4.73692 4.86999 4.88619 5.02415 5.14874 5.22951 5.23637 5.27406 5.33673 5.48988 5.58799 5.65794 5.69963 5.80408 5.88722 5.94821 6.13399 6.31151 6.45859 7.00371 7.03861 7.40100 7.50786 7.65397 7.84382 8.21668 8.59677 8.90753 9.51623 10.99927 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.003610 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.136471 B = 7753.801266 C = 8075.413016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.039 3.961 3 N -0.473 5.473 4 C 0.054 3.946 5 C -0.203 4.203 6 C 0.126 3.874 7 N -0.540 5.540 8 C 0.020 3.980 9 C 0.062 3.938 10 C 0.011 3.989 11 H 0.099 0.901 12 C 0.256 3.744 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 S 0.105 5.895 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.177 0.823 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 -7.378 -4.084 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.238 4.238 3 N -0.188 5.188 4 C -0.097 4.097 5 C -0.324 4.324 6 C -0.004 4.004 7 N -0.265 5.265 8 C -0.129 4.129 9 C -0.066 4.066 10 C -0.011 4.011 11 H 0.117 0.883 12 C -0.061 4.061 13 N -0.155 5.155 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 S 0.358 5.642 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.194 0.806 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.206 -6.457 -2.578 22.317 hybrid contribution 1.530 0.568 -0.924 1.876 sum -19.676 -5.889 -3.503 20.835 Atomic orbital electron populations 1.20420 0.85432 1.04085 1.03708 1.27004 1.01662 0.91083 1.04098 1.66290 1.05115 1.31547 1.15831 1.21738 0.90741 0.96186 1.01010 1.25837 0.99169 0.95983 1.11440 1.20556 0.88556 1.00719 0.90538 1.62029 1.04794 1.45247 1.14388 1.22494 0.98834 0.91947 0.99625 1.22288 0.84920 0.96634 1.02775 1.19228 1.00320 0.89541 0.91996 0.88334 1.28691 0.90504 0.93163 0.93709 1.80863 1.11641 1.11023 1.11998 1.19176 0.84828 0.98084 0.98655 1.21136 0.91893 0.95638 1.47745 0.92475 1.24946 0.97706 0.96183 0.95100 1.69930 1.07702 1.26211 1.49214 0.86598 0.79342 0.83516 0.78670 1.20629 1.21114 1.19707 1.83872 0.98321 1.12903 1.69080 0.89742 0.90259 0.89370 0.80576 0.87738 0.93145 0.91068 0.91639 0.95314 0.92300 0.89930 0.94449 0.95567 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.04 0.43 7.39 -13.46 -0.10 0.33 16 3 N -0.47 -6.36 10.54 -11.86 -0.13 -6.48 16 4 C 0.05 0.71 11.25 -19.18 -0.22 0.50 16 5 C -0.20 -2.42 5.32 -35.92 -0.19 -2.62 16 6 C 0.13 1.47 5.33 -4.97 -0.03 1.44 16 7 N -0.54 -7.12 4.38 -244.36 -1.07 -8.19 16 8 C 0.02 0.22 9.37 60.07 0.56 0.78 16 9 C 0.06 0.88 4.36 -3.82 -0.02 0.87 16 10 C 0.01 0.20 2.26 -93.41 -0.21 -0.01 16 11 H 0.10 1.64 6.66 -51.93 -0.35 1.29 16 12 C 0.26 5.33 13.65 -20.86 -0.28 5.04 16 13 N -0.48 -10.91 18.52 42.04 0.78 -10.13 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 15 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 16 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 S 0.10 1.04 21.62 -107.50 -2.32 -1.29 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.10 1.21 6.56 -51.93 -0.34 0.87 16 29 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.72 5.67 -51.93 -0.29 0.43 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.75 8.00 -51.93 -0.42 0.33 16 34 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -31.42 330.97 -7.81 -39.23 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.14 Total: -3.98 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.62 Total: -5.76 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.32 Total: -49.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.32 Total: -1.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.42 -7.81 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076514285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.958 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds