Wall clock time and date at job start Tue Mar 31 2020 00:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29015 * 124.92202 * 2 1 4 4 C 1.31782 * 117.12794 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49784 * 0.02562 * 4 3 2 6 6 C 1.50708 * 126.03625 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47056 * 89.99719 * 6 5 4 8 8 C 1.46905 * 111.00045 * 66.04620 * 7 6 5 9 9 C 1.46898 * 110.99838 * 189.99717 * 7 6 5 10 10 C 1.53005 * 109.46879 * 75.65248 * 9 7 6 11 11 H 1.08996 * 109.46752 * 304.80631 * 10 9 7 12 12 C 1.47193 * 109.47309 * 64.80968 * 10 9 7 13 13 N 6.99579 * 149.71695 * 61.78741 * 2 1 3 14 14 C 1.53000 * 109.47092 * 184.80823 * 10 9 7 15 15 C 1.50705 * 109.47185 * 174.99833 * 14 10 9 16 16 H 1.07992 * 119.99491 * 0.02562 * 15 14 10 17 17 C 1.37879 * 119.99793 * 179.72739 * 15 14 10 18 18 N 1.31510 * 120.00167 * 0.26971 * 17 15 14 19 19 Si 1.86796 * 119.99858 * 180.27777 * 17 15 14 20 20 H 1.48500 * 109.47320 * 89.99312 * 19 17 15 21 21 H 1.48504 * 109.47059 * 209.99866 * 19 17 15 22 22 H 1.48505 * 109.47097 * 329.99476 * 19 17 15 23 23 S 1.70983 * 124.91026 * 180.31817 * 2 1 3 24 24 H 1.09002 * 109.47105 * 89.96980 * 1 2 3 25 25 H 1.09000 * 109.47286 * 209.97556 * 1 2 3 26 26 H 1.09004 * 109.46757 * 329.97528 * 1 2 3 27 27 H 1.08000 * 122.75511 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.46748 * 329.99407 * 6 5 4 29 29 H 1.09000 * 109.46778 * 209.99468 * 6 5 4 30 30 H 1.09002 * 109.46703 * 187.91422 * 8 7 6 31 31 H 1.08997 * 109.46996 * 307.90702 * 8 7 6 32 32 H 1.08995 * 109.47325 * 67.90991 * 8 7 6 33 33 H 1.09000 * 109.47290 * 315.65050 * 9 7 6 34 34 H 1.09004 * 109.47224 * 195.64812 * 9 7 6 35 35 H 1.09001 * 109.47439 * 54.99658 * 14 10 9 36 36 H 1.08994 * 109.47071 * 295.00218 * 14 10 9 37 37 H 0.96994 * 120.00323 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0578 0.0000 4 6 3.5512 0.8791 0.0005 5 6 3.9354 -0.4009 0.0004 6 6 5.3575 -0.8998 0.0015 7 7 5.8183 -1.0623 1.3868 8 6 5.0731 -2.1294 2.0679 9 6 7.2642 -1.3173 1.4341 10 6 8.0208 -0.0128 1.1752 11 1 7.6889 0.4184 0.2309 12 6 7.7527 0.9353 2.2688 13 7 7.5482 1.6677 3.1087 14 6 9.5222 -0.2993 1.1053 15 6 10.2572 0.9615 0.7292 16 1 9.7084 1.8756 0.5576 17 6 11.6307 0.9492 0.6101 18 7 12.2990 -0.1639 0.8196 19 14 12.5425 2.5137 0.1515 20 1 12.9044 3.2557 1.3859 21 1 13.7770 2.1659 -0.5970 22 1 11.6707 3.3634 -0.6991 23 16 2.4856 -1.4021 -0.0078 24 1 -0.3633 0.0005 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.2534 1.6998 0.0002 28 1 5.9953 -0.1802 -0.5116 29 1 5.4060 -1.8598 -0.5125 30 1 5.3330 -2.1355 3.1264 31 1 4.0032 -1.9528 1.9576 32 1 5.3300 -3.0917 1.6251 33 1 7.5294 -2.0487 0.6707 34 1 7.5330 -1.7043 2.4170 35 1 9.7110 -1.0674 0.3554 36 1 9.8713 -0.6471 2.0775 37 1 13.2653 -0.1725 0.7363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076514285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:01 Heat of formation + Delta-G solvation = 44.142365 kcal Electronic energy + Delta-G solvation = -18768.666909 eV Core-core repulsion = 15864.863773 eV Total energy + Delta-G solvation = -2903.803136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.72316 -39.32508 -37.31579 -35.51493 -33.86902 -32.99779 -30.49523 -29.00121 -27.08189 -25.86775 -24.50900 -23.55638 -22.60621 -20.20747 -18.98234 -18.53788 -18.21430 -16.84589 -16.48911 -16.26967 -15.95721 -15.59725 -15.41909 -14.78476 -14.53858 -14.40823 -14.23895 -13.83208 -13.72210 -13.39598 -13.26945 -13.14321 -13.02663 -12.92338 -12.74525 -12.63310 -12.48127 -12.30939 -12.12933 -11.77341 -11.37888 -11.12545 -10.58846 -10.54579 -10.18977 -9.68529 -9.26796 -8.18855 -6.26398 -0.26147 0.39447 0.76526 1.39945 1.42737 1.51336 1.84805 2.10318 2.18165 2.42013 3.00295 3.17062 3.29604 3.37989 3.84522 4.09125 4.14467 4.20382 4.36390 4.40881 4.61562 4.65138 4.68353 4.72759 4.73927 4.87637 4.91172 4.97784 5.01772 5.04867 5.27405 5.48653 5.63528 5.80304 5.99319 6.06254 6.23012 6.80234 6.84801 6.95702 7.42086 8.91970 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.003610 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.136471 B = 7753.801266 C = 8075.413016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 N -0.510 5.510 4 C 0.034 3.966 5 C -0.216 4.216 6 C 0.127 3.873 7 N -0.557 5.557 8 C 0.021 3.979 9 C 0.073 3.927 10 C 0.021 3.979 11 H 0.116 0.884 12 C 0.268 3.732 13 N -0.518 5.518 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.945 3.055 20 H -0.285 1.285 21 H -0.278 1.278 22 H -0.265 1.265 23 S 0.154 5.846 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.002 0.998 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.911 -8.477 -4.967 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.245 4.245 3 N -0.226 5.226 4 C -0.117 4.117 5 C -0.337 4.337 6 C -0.003 4.003 7 N -0.282 5.282 8 C -0.127 4.127 9 C -0.055 4.055 10 C -0.001 4.001 11 H 0.134 0.866 12 C -0.048 4.048 13 N -0.195 5.195 14 C 0.000 4.000 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.771 3.229 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.189 1.189 23 S 0.408 5.592 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.635 -7.563 -3.468 24.115 hybrid contribution 1.892 0.879 -0.648 2.184 sum -20.743 -6.683 -4.116 22.179 Atomic orbital electron populations 1.20621 0.82954 1.05161 1.05082 1.27683 1.03284 0.91097 1.02400 1.66308 1.05392 1.33136 1.17740 1.21746 0.91019 0.96719 1.02205 1.25914 1.00244 0.96176 1.11408 1.20584 0.88361 1.01560 0.89785 1.61907 1.04115 1.46491 1.15645 1.22496 0.98651 0.92213 0.99331 1.22099 0.85488 0.94495 1.03430 1.19217 0.97948 0.91062 0.91874 0.86619 1.29254 0.89454 0.92651 0.93487 1.80859 1.12873 1.12416 1.13381 1.18993 0.87488 0.96525 0.97035 1.21555 0.92359 0.96803 1.46886 0.92925 1.25667 0.98769 0.98725 0.95439 1.70015 1.07941 1.27808 1.50481 0.85751 0.78549 0.80411 0.78222 1.21159 1.20336 1.18892 1.83619 0.96362 1.11230 1.67982 0.88092 0.87962 0.89502 0.81572 0.88068 0.91237 0.91513 0.91368 0.93439 0.90090 0.90155 0.94311 0.98008 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.46 71.24 0.75 -0.16 16 2 C 0.03 0.65 7.39 88.52 0.65 1.30 16 3 N -0.51 -13.49 10.54 -191.44 -2.02 -15.51 16 4 C 0.03 0.89 11.25 83.66 0.94 1.83 16 5 C -0.22 -4.86 5.32 24.64 0.13 -4.73 16 6 C 0.13 2.69 5.33 85.56 0.46 3.15 16 7 N -0.56 -13.65 4.38 -927.03 -4.06 -17.71 16 8 C 0.02 0.43 9.37 127.69 1.20 1.62 16 9 C 0.07 1.96 4.36 86.31 0.38 2.33 16 10 C 0.02 0.73 2.26 -12.60 -0.03 0.70 16 11 H 0.12 3.69 6.66 -2.39 -0.02 3.67 16 12 C 0.27 11.08 13.65 89.47 1.22 12.30 16 13 N -0.52 -23.75 18.52 19.97 0.37 -23.38 16 14 C 0.04 1.72 4.42 29.85 0.13 1.86 16 15 C -0.54 -28.21 8.60 25.60 0.22 -27.99 16 16 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 17 C 0.01 0.71 5.46 84.66 0.46 1.17 16 18 N -0.92 -52.47 13.29 21.45 0.28 -52.19 16 19 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 S 0.15 2.67 21.62 -56.49 -1.22 1.45 16 24 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.10 2.18 6.56 -2.39 -0.02 2.17 16 29 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.34 5.67 -2.39 -0.01 1.32 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.83 8.00 -2.39 -0.02 1.81 16 34 H 0.08 2.19 7.94 -2.38 -0.02 2.17 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.17 330.97 2.96 -64.22 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.07 Total: 4.34 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.51 Total: -6.61 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -5.42 Total: -108.79 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.22 Total: 1.45 kcal Total: -67.17 2.96 -64.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076514285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.359 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds