Wall clock time and date at job start Tue Mar 31 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99749 * 2 1 4 4 N 1.46504 * 109.47474 * 124.99852 * 3 2 1 5 5 C 1.36542 * 127.13871 * 89.97441 * 4 3 2 6 6 S 1.76196 * 126.48428 * 359.96808 * 5 4 3 7 7 C 1.81003 * 99.99843 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46900 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47325 * 59.99531 * 13 11 9 15 15 H 1.48496 * 109.47425 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47183 * 299.99726 * 13 11 9 17 17 N 1.31288 * 107.02905 * 180.23463 * 5 4 3 18 18 N 1.28526 * 109.85436 * 359.61701 * 17 5 4 19 19 C 1.30294 * 110.08355 * 0.39455 * 18 17 5 20 20 C 1.50693 * 126.34410 * 179.76147 * 19 18 17 21 21 C 1.53002 * 117.49983 * 8.62533 * 20 19 18 22 22 C 1.53002 * 117.50100 * 300.00165 * 20 19 18 23 23 H 1.08005 * 120.00466 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99534 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00284 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.47065 * 5.00222 * 3 2 1 27 27 H 1.09000 * 109.47811 * 245.00116 * 3 2 1 28 28 H 1.09000 * 109.47363 * 60.00062 * 7 6 5 29 29 H 1.09001 * 109.47208 * 299.99509 * 7 6 5 30 30 H 1.08993 * 109.46955 * 300.00056 * 8 7 6 31 31 H 1.09000 * 109.47050 * 59.99885 * 8 7 6 32 32 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 33 33 H 1.09002 * 115.54924 * 154.32784 * 20 19 18 34 34 H 1.09000 * 117.49710 * 0.02562 * 21 20 19 35 35 H 1.09000 * 117.50351 * 145.01822 * 21 20 19 36 36 H 1.09000 * 117.50103 * 214.97615 * 22 20 19 37 37 H 1.09003 * 117.49326 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3321 1.1315 5 6 4.2892 0.9010 1.1439 6 16 5.1726 0.1981 -0.2089 7 6 6.7725 -0.1021 0.5825 8 6 7.7327 -0.7294 -0.4303 9 6 9.0650 -0.9787 0.2284 10 1 9.2123 -0.7156 1.2655 11 6 10.0962 -1.5417 -0.4931 12 7 9.9170 -1.8616 -1.7562 13 14 11.7474 -1.8514 0.3235 14 1 11.5663 -2.7758 1.4714 15 1 12.6793 -2.4601 -0.6593 16 1 12.3091 -0.5649 0.8079 17 7 4.7503 1.1040 2.3563 18 7 3.8366 1.6353 3.0876 19 6 2.7448 1.7940 2.3944 20 6 1.4480 2.3784 2.8921 21 6 1.4486 3.0178 4.2821 22 6 0.7566 1.6715 4.0597 23 1 -0.5401 0.9353 0.0004 24 1 -0.5399 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3584 2.1317 0.0896 27 1 2.6212 1.4028 -0.9313 28 1 6.6396 -0.7806 1.4251 29 1 7.1849 0.8422 0.9379 30 1 7.3201 -1.6736 -0.7854 31 1 7.8657 -0.0512 -1.2731 32 1 10.6423 -2.2580 -2.2637 33 1 0.8130 2.8304 2.1301 34 1 2.3872 3.0162 4.8363 35 1 0.8141 3.8908 4.4348 36 1 -0.3333 1.6588 4.0661 37 1 1.2396 0.7835 4.4675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078585921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:15 Heat of formation + Delta-G solvation = 110.948937 kcal Electronic energy + Delta-G solvation = -18608.975180 eV Core-core repulsion = 15708.068995 eV Total energy + Delta-G solvation = -2900.906186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.76728 -37.36778 -36.35645 -33.74421 -32.88521 -30.98178 -30.26462 -27.08882 -25.36398 -24.13076 -22.89981 -22.48766 -21.12063 -20.63586 -19.94825 -17.69129 -16.67380 -16.46889 -16.24350 -15.67394 -15.02706 -14.78140 -14.49793 -14.01971 -13.71757 -13.62345 -13.05854 -12.35366 -12.13820 -11.86592 -11.83843 -11.76409 -11.36259 -11.33404 -11.00818 -10.85845 -10.65428 -10.54304 -10.35270 -10.17618 -9.96370 -9.91241 -9.68866 -9.40446 -9.17787 -8.42916 -7.27100 -6.07676 -4.11627 1.37795 1.65002 1.79817 2.68310 2.83807 2.87320 3.33306 3.36831 3.40897 3.65922 4.10301 4.29500 4.41537 4.43004 4.54481 4.59415 4.73693 4.87665 5.09843 5.28401 5.28613 5.37946 5.47067 5.55594 5.69454 5.87400 5.94743 6.02065 6.07848 6.16317 6.22017 6.23594 6.69485 6.76973 7.48134 7.54591 7.88339 8.24807 8.80885 8.92821 9.52648 11.03321 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026868 B = 0.003634 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.900970 B = 7703.551100 C = 8521.625682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.175 4.175 3 C 0.136 3.864 4 N -0.462 5.462 5 C 0.172 3.828 6 S -0.036 6.036 7 C -0.072 4.072 8 C 0.036 3.964 9 C -0.518 4.518 10 H 0.061 0.939 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.292 5.292 18 N -0.285 5.285 19 C 0.203 3.797 20 C -0.082 4.082 21 C -0.150 4.150 22 C -0.157 4.157 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.555 7.521 4.244 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.194 4.194 3 C 0.014 3.986 4 N -0.156 5.156 5 C -0.201 4.201 6 S 0.194 5.806 7 C -0.221 4.221 8 C -0.003 4.003 9 C -0.559 4.559 10 H 0.079 0.921 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 N -0.135 5.135 18 N -0.125 5.125 19 C -0.066 4.066 20 C -0.103 4.103 21 C -0.188 4.188 22 C -0.196 4.196 23 H 0.118 0.882 24 H 0.125 0.875 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.838 7.267 4.122 23.382 hybrid contribution 0.392 -0.017 0.371 0.540 sum -21.446 7.250 4.493 23.080 Atomic orbital electron populations 1.23903 0.95337 1.02461 0.98354 1.23128 0.96338 0.98278 1.01623 1.20984 0.91859 0.97423 0.88348 1.46342 1.10303 1.47821 1.11106 1.27187 0.86325 1.04956 1.01674 1.85623 1.12384 1.73933 1.08648 1.23992 0.90026 1.05157 1.02911 1.18978 0.92114 0.96127 0.93104 1.21027 0.95557 1.41594 0.97685 0.92088 1.24999 0.99033 0.95297 0.94859 1.69953 1.32986 1.42337 1.07909 0.86539 0.83054 0.78682 0.79089 1.20051 1.21211 1.20041 1.74770 1.22543 1.17278 0.98941 1.73869 0.97197 1.15780 1.25629 1.23837 0.97673 1.03029 0.82088 1.19986 0.91899 1.05473 0.92912 1.23027 1.03550 0.96333 0.95866 1.23053 0.99561 0.97237 0.99710 0.88234 0.87549 0.86115 0.88331 0.87389 0.89673 0.89674 0.95420 0.95419 0.92698 0.86283 0.87157 0.87929 0.87949 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 14.32 29.02 0.42 -0.71 16 2 C -0.17 -1.63 9.85 -36.03 -0.35 -1.98 16 3 C 0.14 1.36 6.32 -5.19 -0.03 1.33 16 4 N -0.46 -6.62 2.80 -114.81 -0.32 -6.94 16 5 C 0.17 3.09 8.07 -88.33 -0.71 2.38 16 6 S -0.04 -0.65 21.81 -107.50 -2.34 -2.99 16 7 C -0.07 -1.57 5.17 37.16 0.19 -1.38 16 8 C 0.04 0.92 4.98 -27.88 -0.14 0.79 16 9 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 10 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 13 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 N -0.29 -5.91 11.60 30.68 0.36 -5.55 16 18 N -0.29 -5.22 11.79 32.99 0.39 -4.83 16 19 C 0.20 2.95 7.59 -154.00 -1.17 1.78 16 20 C -0.08 -0.81 5.99 -91.77 -0.55 -1.36 16 21 C -0.15 -1.31 10.15 -26.73 -0.27 -1.58 16 22 C -0.16 -1.32 10.23 -26.73 -0.27 -1.60 16 23 H 0.10 0.51 7.84 -52.48 -0.41 0.10 16 24 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 25 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.10 0.71 7.09 -51.93 -0.37 0.34 16 27 H 0.11 1.06 7.86 -51.93 -0.41 0.66 16 28 H 0.08 1.88 8.14 -51.92 -0.42 1.46 16 29 H 0.08 1.88 8.14 -51.92 -0.42 1.45 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.12 0.86 7.54 -51.93 -0.39 0.47 16 34 H 0.11 1.18 7.92 -51.93 -0.41 0.76 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -32.47 336.79 -9.77 -42.24 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.34 Total: -2.34 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -3.31 Total: -15.58 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 1.16 Total: -42.97 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.34 Total: -2.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.47 -9.77 -42.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078585921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.190 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds