Wall clock time and date at job start Tue Mar 31 2020 00:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99749 * 2 1 4 4 N 1.46504 * 109.47474 * 124.99852 * 3 2 1 5 5 C 1.36542 * 127.13871 * 89.97441 * 4 3 2 6 6 S 1.76196 * 126.48428 * 359.96808 * 5 4 3 7 7 C 1.81003 * 99.99843 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46900 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46866 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99834 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00496 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47325 * 59.99531 * 13 11 9 15 15 H 1.48496 * 109.47425 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47183 * 299.99726 * 13 11 9 17 17 N 1.31288 * 107.02905 * 180.23463 * 5 4 3 18 18 N 1.28526 * 109.85436 * 359.61701 * 17 5 4 19 19 C 1.30294 * 110.08355 * 0.39455 * 18 17 5 20 20 C 1.50693 * 126.34410 * 179.76147 * 19 18 17 21 21 C 1.53002 * 117.49983 * 8.62533 * 20 19 18 22 22 C 1.53002 * 117.50100 * 300.00165 * 20 19 18 23 23 H 1.08005 * 120.00466 * 359.97438 * 1 2 3 24 24 H 1.08001 * 119.99534 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00284 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.47065 * 5.00222 * 3 2 1 27 27 H 1.09000 * 109.47811 * 245.00116 * 3 2 1 28 28 H 1.09000 * 109.47363 * 60.00062 * 7 6 5 29 29 H 1.09001 * 109.47208 * 299.99509 * 7 6 5 30 30 H 1.08993 * 109.46955 * 300.00056 * 8 7 6 31 31 H 1.09000 * 109.47050 * 59.99885 * 8 7 6 32 32 H 0.96992 * 120.00032 * 180.02562 * 12 11 9 33 33 H 1.09002 * 115.54924 * 154.32784 * 20 19 18 34 34 H 1.09000 * 117.49710 * 0.02562 * 21 20 19 35 35 H 1.09000 * 117.50351 * 145.01822 * 21 20 19 36 36 H 1.09000 * 117.50103 * 214.97615 * 22 20 19 37 37 H 1.09003 * 117.49326 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3321 1.1315 5 6 4.2892 0.9010 1.1439 6 16 5.1726 0.1981 -0.2089 7 6 6.7725 -0.1021 0.5825 8 6 7.7327 -0.7294 -0.4303 9 6 9.0650 -0.9787 0.2284 10 1 9.2123 -0.7156 1.2655 11 6 10.0962 -1.5417 -0.4931 12 7 9.9170 -1.8616 -1.7562 13 14 11.7474 -1.8514 0.3235 14 1 11.5663 -2.7758 1.4714 15 1 12.6793 -2.4601 -0.6593 16 1 12.3091 -0.5649 0.8079 17 7 4.7503 1.1040 2.3563 18 7 3.8366 1.6353 3.0876 19 6 2.7448 1.7940 2.3944 20 6 1.4480 2.3784 2.8921 21 6 1.4486 3.0178 4.2821 22 6 0.7566 1.6715 4.0597 23 1 -0.5401 0.9353 0.0004 24 1 -0.5399 -0.9354 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3584 2.1317 0.0896 27 1 2.6212 1.4028 -0.9313 28 1 6.6396 -0.7806 1.4251 29 1 7.1849 0.8422 0.9379 30 1 7.3201 -1.6736 -0.7854 31 1 7.8657 -0.0512 -1.2731 32 1 10.6423 -2.2580 -2.2637 33 1 0.8130 2.8304 2.1301 34 1 2.3872 3.0162 4.8363 35 1 0.8141 3.8908 4.4348 36 1 -0.3333 1.6588 4.0661 37 1 1.2396 0.7835 4.4675 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078585921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:14 Heat of formation + Delta-G solvation = 93.844714 kcal Electronic energy + Delta-G solvation = -18609.716875 eV Core-core repulsion = 15708.068995 eV Total energy + Delta-G solvation = -2901.647880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.00046 -38.11998 -37.25333 -35.83745 -33.79636 -33.01061 -31.55371 -27.96200 -27.39205 -25.17193 -24.16024 -23.25457 -22.93973 -21.49251 -20.82092 -18.79994 -18.70187 -17.72524 -17.34086 -16.64492 -16.53277 -15.88351 -15.71942 -15.59760 -15.17236 -14.68840 -14.13285 -13.82420 -13.73349 -13.08680 -12.99354 -12.79691 -12.54738 -12.51960 -12.42298 -12.35838 -12.14639 -12.00852 -11.75861 -11.52969 -11.42298 -11.32066 -11.13532 -10.63555 -10.58712 -10.54759 -8.72301 -8.25332 -6.37585 0.00991 0.49502 0.99153 1.12145 1.41344 1.43910 1.52272 1.60105 1.80406 2.40252 2.91125 3.08409 3.21511 3.50471 3.73151 3.77550 3.90566 4.04020 4.13693 4.15449 4.22354 4.31926 4.46522 4.66743 4.77737 4.78766 4.84134 4.93248 4.96099 5.13995 5.28226 5.33002 5.42342 5.52450 5.59519 5.70580 5.76998 6.09424 6.74000 7.31389 7.52028 8.86169 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026868 B = 0.003634 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.900970 B = 7703.551100 C = 8521.625682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.209 4.209 3 C 0.129 3.871 4 N -0.454 5.454 5 C 0.152 3.848 6 S 0.001 5.999 7 C -0.067 4.067 8 C 0.045 3.955 9 C -0.545 4.545 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.968 3.032 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.267 1.267 17 N -0.334 5.334 18 N -0.330 5.330 19 C 0.221 3.779 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.144 4.144 23 H 0.129 0.871 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.009 0.991 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.402 8.651 4.592 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.228 4.228 3 C 0.009 3.991 4 N -0.146 5.146 5 C -0.224 4.224 6 S 0.230 5.770 7 C -0.216 4.216 8 C 0.006 3.994 9 C -0.584 4.584 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.566 5.566 13 Si 0.792 3.208 14 H -0.193 1.193 15 H -0.203 1.203 16 H -0.192 1.192 17 N -0.177 5.177 18 N -0.169 5.169 19 C -0.049 4.049 20 C -0.115 4.115 21 C -0.185 4.185 22 C -0.182 4.182 23 H 0.147 0.853 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.155 0.845 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.706 8.398 4.465 26.473 hybrid contribution 1.050 -0.334 0.281 1.137 sum -23.656 8.064 4.746 25.440 Atomic orbital electron populations 1.24202 0.94231 1.04302 0.93857 1.22919 0.97236 0.96895 1.05742 1.21393 0.91753 0.99322 0.86642 1.46628 1.09402 1.46395 1.12217 1.26992 0.88167 1.06219 1.01022 1.85238 1.09491 1.74500 1.07769 1.23537 0.92263 1.04094 1.01751 1.18729 0.92521 0.94944 0.93171 1.21436 0.97061 1.41964 0.97985 0.92105 1.25910 1.02974 0.94768 0.95413 1.70065 1.34346 1.42915 1.09294 0.85454 0.78217 0.78868 0.78262 1.19274 1.20340 1.19228 1.74649 1.24418 1.18506 1.00136 1.73776 0.98504 1.17908 1.26720 1.24772 0.98253 1.00326 0.81557 1.20429 0.90224 1.06496 0.94386 1.23101 1.03042 0.97922 0.94470 1.23118 1.01265 0.96028 0.97801 0.85284 0.86655 0.88769 0.84454 0.87737 0.90604 0.90503 0.97272 0.97211 0.92362 0.82437 0.89943 0.84584 0.84283 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 14.32 67.78 0.97 -0.29 16 2 C -0.21 -3.50 9.85 25.65 0.25 -3.24 16 3 C 0.13 2.30 6.32 85.63 0.54 2.84 16 4 N -0.45 -12.62 2.80 -517.16 -1.45 -14.07 16 5 C 0.15 5.57 8.07 179.55 1.45 7.02 16 6 S 0.00 0.02 21.81 -56.49 -1.23 -1.21 16 7 C -0.07 -3.08 5.17 71.98 0.37 -2.71 16 8 C 0.05 2.44 4.98 29.85 0.15 2.59 16 9 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 10 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 11 C 0.01 0.49 5.46 84.65 0.46 0.95 16 12 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 13 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 N -0.33 -14.05 11.60 -56.85 -0.66 -14.71 16 18 N -0.33 -12.36 11.79 -49.53 -0.58 -12.94 16 19 C 0.22 6.20 7.59 137.63 1.04 7.24 16 20 C -0.09 -1.55 5.99 -11.54 -0.07 -1.62 16 21 C -0.15 -2.17 10.15 30.60 0.31 -1.86 16 22 C -0.14 -1.96 10.23 30.60 0.31 -1.65 16 23 H 0.13 0.55 7.84 -2.91 -0.02 0.52 16 24 H 0.12 0.97 8.06 -2.91 -0.02 0.94 16 25 H 0.09 2.06 8.06 -2.91 -0.02 2.04 16 26 H 0.14 1.34 7.09 -2.38 -0.02 1.32 16 27 H 0.10 1.91 7.86 -2.39 -0.02 1.89 16 28 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 29 H 0.08 3.58 8.14 -2.39 -0.02 3.57 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.16 1.37 7.54 -2.39 -0.02 1.35 16 34 H 0.08 1.72 7.92 -2.39 -0.02 1.70 16 35 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.53 336.79 5.47 -69.07 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.05 Total: 4.82 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 6.03 Total: -22.07 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -2.40 Total: -97.32 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.23 Total: -1.21 kcal Total: -74.53 5.47 -69.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078585921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.911 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds