Wall clock time and date at job start Tue Mar 31 2020 01:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46903 * 2 1 4 4 N 1.46897 * 109.47059 * 240.00576 * 2 1 3 5 5 C 1.46903 * 111.00483 * 89.62026 * 4 2 1 6 6 C 1.52999 * 109.46972 * 184.92275 * 5 4 2 7 7 C 1.50699 * 115.56404 * 330.43335 * 6 5 4 8 8 H 1.07999 * 120.00170 * 118.71357 * 7 6 5 9 9 C 1.37880 * 119.99872 * 298.70878 * 7 6 5 10 10 N 1.31519 * 119.99554 * 184.64358 * 9 7 6 11 11 Si 1.86794 * 120.00286 * 4.64917 * 9 7 6 12 12 H 1.48502 * 109.47091 * 84.83621 * 11 9 7 13 13 H 1.48496 * 109.47151 * 204.83786 * 11 9 7 14 14 H 1.48504 * 109.46979 * 324.83588 * 11 9 7 15 15 C 1.53010 * 117.49420 * 184.74748 * 6 5 4 16 16 C 1.53001 * 60.02792 * 252.49859 * 15 6 5 17 17 C 1.50695 * 109.47364 * 119.99866 * 2 1 3 18 18 C 1.38264 * 119.98906 * 84.20803 * 17 2 1 19 19 C 1.38225 * 120.02275 * 179.76322 * 18 17 2 20 20 C 1.38228 * 120.01551 * 0.51575 * 19 18 17 21 21 C 1.38335 * 119.98735 * 359.74032 * 20 19 18 22 22 Cl 1.73597 * 120.01443 * 180.02562 * 21 20 19 23 23 C 1.38193 * 119.99931 * 264.48316 * 17 2 1 24 24 H 1.09001 * 109.46645 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46878 * 299.99604 * 1 2 3 26 26 H 1.08999 * 109.46867 * 60.00184 * 1 2 3 27 27 H 1.00903 * 111.00236 * 325.65986 * 4 2 1 28 28 H 1.08994 * 109.46800 * 64.92143 * 5 4 2 29 29 H 1.08998 * 109.46840 * 304.92045 * 5 4 2 30 30 H 0.97001 * 119.99481 * 180.02562 * 10 9 7 31 31 H 1.08998 * 117.49573 * 359.97438 * 15 6 5 32 32 H 1.08998 * 117.49524 * 144.99906 * 15 6 5 33 33 H 1.09003 * 117.49929 * 107.50482 * 16 15 6 34 34 H 1.09004 * 117.49922 * 252.51856 * 16 15 6 35 35 H 1.07993 * 119.99114 * 0.02562 * 18 17 2 36 36 H 1.08004 * 119.98914 * 180.25006 * 19 18 17 37 37 H 1.07999 * 120.01284 * 179.72201 * 20 19 18 38 38 H 1.08006 * 120.00158 * 359.97438 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.1866 0.2457 -2.3176 6 6 2.5783 -0.5280 -3.5782 7 6 3.3574 -1.7970 -3.3465 8 1 2.9515 -2.7457 -3.6652 9 6 4.5886 -1.7469 -2.7278 10 7 5.3090 -2.8406 -2.6074 11 14 5.2332 -0.1257 -2.0604 12 1 4.6930 0.0975 -0.6952 13 1 6.7165 -0.1679 -2.0050 14 1 4.8024 0.9823 -2.9504 15 6 2.9083 0.2847 -4.8319 16 6 1.5998 -0.5044 -4.7550 17 6 2.0324 -0.7103 1.2304 18 6 2.1489 -2.0881 1.2339 19 6 2.6142 -2.7400 2.3604 20 6 2.9534 -2.0157 3.4879 21 6 2.8320 -0.6377 3.4868 22 17 3.2584 0.2727 4.9021 23 6 2.3712 0.0148 2.3570 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.4069 -1.4526 -1.4537 28 1 2.9689 0.9647 -2.0749 29 1 1.2491 0.7736 -2.4920 30 1 6.1749 -2.8053 -2.1717 31 1 2.8459 1.3705 -4.7586 32 1 3.6891 -0.0983 -5.4888 33 1 0.6768 0.0623 -4.6312 34 1 1.5198 -1.4067 -5.3612 35 1 1.8802 -2.6547 0.3547 36 1 2.7088 -3.8158 2.3612 37 1 3.3127 -2.5254 4.3696 38 1 2.2764 1.0907 2.3554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:23 Heat of formation + Delta-G solvation = 29.319481 kcal Electronic energy + Delta-G solvation = -19715.196014 eV Core-core repulsion = 16776.413652 eV Total energy + Delta-G solvation = -2938.782362 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.55893 -39.04161 -37.58509 -36.60380 -34.08092 -32.50405 -31.55864 -29.94488 -27.71133 -26.08484 -24.41762 -23.48503 -23.09279 -21.44355 -20.75191 -18.44496 -17.82531 -16.97560 -16.56784 -16.44822 -15.88166 -15.28352 -15.24908 -15.04570 -14.65846 -14.51745 -14.44205 -13.93631 -13.72487 -13.56928 -12.99601 -12.80778 -12.65702 -12.44949 -12.28810 -12.18754 -12.04028 -11.99728 -11.90010 -11.63733 -11.30255 -10.82402 -10.52335 -10.17613 -9.82950 -9.54911 -8.97691 -8.12320 -6.12752 0.27171 0.35224 1.13528 1.46160 1.53552 1.56057 2.54582 2.70644 3.11835 3.40081 3.45812 3.79575 3.93439 4.16256 4.20193 4.25478 4.31812 4.40341 4.44773 4.52014 4.55636 4.66614 4.71418 4.84160 4.92068 4.94887 4.99058 5.06129 5.12899 5.22874 5.29018 5.32055 5.48834 5.56101 5.64445 5.84340 5.90941 6.39099 6.46760 6.74914 6.90472 7.57319 9.02555 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.005627 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.386928 B = 4975.225021 C = 5428.183119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 H 0.079 0.921 4 N -0.670 5.670 5 C 0.098 3.902 6 C -0.026 4.026 7 C -0.453 4.453 8 H 0.030 0.970 9 C 0.051 3.949 10 N -0.952 5.952 11 Si 0.942 3.058 12 H -0.263 1.263 13 H -0.328 1.328 14 H -0.250 1.250 15 C -0.198 4.198 16 C -0.165 4.165 17 C -0.059 4.059 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.045 4.045 22 Cl -0.073 7.073 23 C -0.121 4.121 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.348 0.652 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.257 0.743 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 7.169 11.209 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 H 0.097 0.903 4 N -0.302 5.302 5 C -0.030 4.030 6 C -0.027 4.027 7 C -0.490 4.490 8 H 0.048 0.952 9 C -0.146 4.146 10 N -0.593 5.593 11 Si 0.771 3.229 12 H -0.188 1.188 13 H -0.257 1.257 14 H -0.174 1.174 15 C -0.236 4.236 16 C -0.202 4.202 17 C -0.060 4.060 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.071 4.071 22 Cl -0.044 7.044 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.095 7.222 11.576 16.397 hybrid contribution 0.128 0.424 -0.006 0.443 sum -8.967 7.646 11.570 16.515 Atomic orbital electron populations 1.22347 0.94042 1.02788 1.02914 1.20512 0.94196 0.96570 0.88128 0.90262 1.60278 1.54725 1.11495 1.03688 1.21555 0.98235 0.93176 0.90072 1.19484 0.99955 0.96076 0.87195 1.20096 1.01331 0.90923 1.36689 0.95211 1.25310 0.96483 0.98061 0.94763 1.70045 1.12942 1.30230 1.46074 0.85981 0.73767 0.82444 0.80700 1.18760 1.25740 1.17441 1.23048 0.99133 0.97340 1.04069 1.22891 0.93025 1.01368 1.02952 1.19947 0.97724 0.93962 0.94349 1.21224 0.97995 0.94520 0.98056 1.21376 0.98284 1.01203 0.92346 1.21222 1.01066 0.91791 0.99951 1.20936 1.04331 0.92651 0.89217 1.98342 1.91970 1.74631 1.39444 1.20995 1.00578 1.00777 0.91669 0.92072 0.90957 0.91556 0.83198 0.93567 0.93798 0.93466 0.89087 0.91347 0.87848 0.90828 0.85876 0.83654 0.83390 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.15 71.98 0.66 -2.98 16 2 C 0.12 3.38 2.81 44.17 0.12 3.50 16 3 H 0.08 2.28 7.69 -2.38 -0.02 2.26 16 4 N -0.67 -24.21 3.98 -495.46 -1.97 -26.19 16 5 C 0.10 3.62 4.45 86.30 0.38 4.00 16 6 C -0.03 -1.11 1.21 -52.90 -0.06 -1.17 16 7 C -0.45 -24.38 8.47 25.60 0.22 -24.17 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C 0.05 2.92 5.41 84.65 0.46 3.38 16 10 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 11 Si 0.94 46.62 24.17 68.60 1.66 48.28 16 12 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.33 -17.06 7.11 99.48 0.71 -16.35 16 14 H -0.25 -11.41 6.21 99.48 0.62 -10.79 16 15 C -0.20 -7.75 9.24 30.60 0.28 -7.47 16 16 C -0.17 -5.99 9.88 30.62 0.30 -5.69 16 17 C -0.06 -1.79 4.98 -19.87 -0.10 -1.89 16 18 C -0.10 -3.15 9.32 22.27 0.21 -2.94 16 19 C -0.11 -3.18 10.05 22.26 0.22 -2.95 16 20 C -0.12 -3.15 9.83 22.29 0.22 -2.93 16 21 C -0.04 -1.21 6.32 22.32 0.14 -1.07 16 22 Cl -0.07 -1.72 28.96 -2.72 -0.08 -1.80 16 23 C -0.12 -3.41 9.46 22.29 0.21 -3.19 16 24 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.38 7.72 -2.39 -0.02 1.37 16 27 H 0.35 12.50 7.73 -89.69 -0.69 11.81 16 28 H 0.05 1.80 5.30 -2.39 -0.01 1.79 16 29 H 0.04 1.35 7.43 -2.39 -0.02 1.33 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.10 3.05 8.04 -2.39 -0.02 3.03 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.12 4.14 7.27 -2.91 -0.02 4.11 16 36 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -63.38 324.49 3.44 -59.93 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.27 Total: 24.32 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 3.27 Total: -45.57 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.67 Total: -85.16 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.66 Total: 48.28 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -63.38 3.44 -59.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.253 kcal (2) G-P(sol) polarization free energy of solvation -63.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds